mRNA_M-pyrifera_M_contig95257.21975.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95257.21975.1
Unique NamemRNA_M-pyrifera_M_contig95257.21975.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95257.21975.1 vs. uniprot
Match: A0A2P6N761_9EUKA (Cyclin domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N761_9EUKA)

HSP 1 Score: 53.5 bits (127), Expect = 1.200e-5
Identity = 38/127 (29.92%), Postives = 59/127 (46.46%), Query Frame = 1 
Query:   10 REKVYDATFVDPPDIQPGRAANAHASLGLVSSVQSYRPAVELEAELDSRFLERHDWLPPELNVRLSSLRKVKHLLVQTAERIQAELVIPALAFSLLDRLILARRINAATLAPVAAATFLLAFKFLQP 390
            +   YD  F+D PD+  G+            S+  +    +L+++L+ +F  +H W+     V+L  +RKVK  L       + +    ALA+ LLDRLI+   I    L P A    LL+ KF  P
Sbjct:  251 KRSQYDPDFIDDPDLTTGKHKTVLNLPFYRGSIIPFVRPDDLKSDLNDQFRRKHPWI--NAGVKLYKIRKVKKKLYDVIVDTKLDFSFLALAYVLLDRLIMRNVIFRENLKPYAVVCLLLSIKFNDP 375
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95257.21975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2P6N761_9EUKA1.200e-529.92Cyclin domain-containing protein n=1 Tax=Planoprot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95257contigM-pyrifera_M_contig95257:60..458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog67593.Physo134475
Preferred nameCABLES1
KEGG koko:K09528
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000278,GO:0002009,GO:0002165,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007049,GO:0007275,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0022402,GO:0030424,GO:0030426,GO:0030427,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033267,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044719,GO:0044770,GO:0044772,GO:0044843,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050794,GO:0051726,GO:0060429,GO:0060562,GO:0065007,GO:0065008,GO:0070013,GO:0090066,GO:0097458,GO:0120025,GO:0120038,GO:0150034,GO:1903047
EggNOG free text desc.Cyclin, N-terminal domain
EggNOG OGs3Q7HJ@4776,KOG4164@1,KOG4164@2759
COG Functional cat.D
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041,ko03110
Exons1
Model size399
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.9897668-CDS-M-pyrifera_M_contig95257:59..4581622816866.9897668-CDS-M-pyrifera_M_contig95257:59..458Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95257 60..458 -
1692278224.9272919-CDS-M-pyrifera_M_contig95257:59..4581692278224.9272919-CDS-M-pyrifera_M_contig95257:59..458Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95257 60..458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95257.21975.1prot_M-pyrifera_M_contig95257.21975.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95257 60..458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95257.21975.1

>prot_M-pyrifera_M_contig95257.21975.1 ID=prot_M-pyrifera_M_contig95257.21975.1|Name=mRNA_M-pyrifera_M_contig95257.21975.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MANREKVYDATFVDPPDIQPGRAANAHASLGLVSSVQSYRPAVELEAELD
SRFLERHDWLPPELNVRLSSLRKVKHLLVQTAERIQAELVIPALAFSLLD
RLILARRINAATLAPVAAATFLLAFKFLQPGTS
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mRNA from alignment at M-pyrifera_M_contig95257:60..458-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95257.21975.1 ID=mRNA_M-pyrifera_M_contig95257.21975.1|Name=mRNA_M-pyrifera_M_contig95257.21975.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig95257:60..458- (Macrocystis pyrifera P11B4 male)
ATGGCGAATCGAGAGAAAGTGTATGATGCGACATTTGTGGATCCCCCCGA
TATTCAACCAGGTCGAGCAGCAAATGCGCATGCAAGTTTGGGATTGGTGA
GTTCAGTGCAATCCTATCGTCCTGCAGTGGAACTGGAGGCAGAATTGGAT
TCGAGGTTTTTGGAAAGACACGATTGGCTTCCGCCAGAACTCAACGTTCG
CTTGTCTTCGCTGCGAAAAGTAAAACACTTGCTCGTACAAACAGCAGAAC
GTATTCAAGCCGAACTAGTCATTCCAGCACTTGCATTCTCTCTACTCGAT
CGCCTCATCCTTGCAAGAAGAATCAATGCGGCAACACTTGCCCCTGTCGC
GGCTGCAACTTTCCTTCTTGCCTTCAAATTCCTCCAACCAGGCACATCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95257:60..458-

>mRNA_M-pyrifera_M_contig95257.21975.1 ID=mRNA_M-pyrifera_M_contig95257.21975.1|Name=mRNA_M-pyrifera_M_contig95257.21975.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig95257:60..458- (Macrocystis pyrifera P11B4 male)
ATGGCGAATCGAGAGAAAGTGTATGATGCGACATTTGTGGATCCCCCCGA
TATTCAACCAGGTCGAGCAGCAAATGCGCATGCAAGTTTGGGATTGGTGA
GTTCAGTGCAATCCTATCGTCCTGCAGTGGAACTGGAGGCAGAATTGGAT
TCGAGGTTTTTGGAAAGACACGATTGGCTTCCGCCAGAACTCAACGTTCG
CTTGTCTTCGCTGCGAAAAGTAAAACACTTGCTCGTACAAACAGCAGAAC
GTATTCAAGCCGAACTAGTCATTCCAGCACTTGCATTCTCTCTACTCGAT
CGCCTCATCCTTGCAAGAAGAATCAATGCGGCAACACTTGCCCCTGTCGC
GGCTGCAACTTTCCTTCTTGCCTTCAAATTCCTCCAACCAGGCACATCCA
TGGCGAATCGAGAGAAAGTGTATGATGCGACATTTGTGGATCCCCCCGAT
ATTCAACCAGGTCGAGCAGCAAATGCGCATGCAAGTTTGGGATTGGTGAG
TTCAGTGCAATCCTATCGTCCTGCAGTGGAACTGGAGGCAGAATTGGATT
CGAGGTTTTTGGAAAGACACGATTGGCTTCCGCCAGAACTCAACGTTCGC
TTGTCTTCGCTGCGAAAAGTAAAACACTTGCTCGTACAAACAGCAGAACG
TATTCAAGCCGAACTAGTCATTCCAGCACTTGCATTCTCTCTACTCGATC
GCCTCATCCTTGCAAGAAGAATCAATGCGGCAACACTTGCCCCTGTCGCG
GCTGCAACTTTCCTTCTTGCCTTCAAATTCCTCCAACCAGGCACATCC
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