mRNA_M-pyrifera_M_contig95174.21959.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95174.21959.1
Unique NamemRNA_M-pyrifera_M_contig95174.21959.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Match: A0A6J0UGQ2_9SAUR (Dolichyl-phosphate-mannose--protein mannosyltransferase n=3 Tax=Bifurcata TaxID=1329961 RepID=A0A6J0UGQ2_9SAUR)

HSP 1 Score: 75.9 bits (185), Expect = 5.570e-14
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 MLLVPWGLSYEHNLFETPT--TLSDPRFVWVGVVWIVIIALIVWVVCERDLGRRWRVLTAMGITLITFLPASHIFVRVGFTLAERQLFFPSLG 273
            +LL PW L ++ ++   P   ++SD R + VGV+W  +IAL    +C  D  RR  + + +G  +I FLPAS++F RVGF +AER  + PS+G
Sbjct:  183 LLLCPWWLCFDWSMGCVPLIKSVSDWRIIAVGVLWFCLIALTCQALCSEDSQRRRILTSGLGFLIIPFLPASNLFFRVGFVIAERVTYLPSIG 275
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BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Match: A0A3Q0GXC4_ALLSI (Dolichyl-phosphate-mannose--protein mannosyltransferase n=1 Tax=Alligator sinensis TaxID=38654 RepID=A0A3Q0GXC4_ALLSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.590e-13
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    1 MLLVPWGLSYEHNLFETPT--TLSDPRFVWVGVVWIVIIALIVWVVCERDLGRRWRVLT-AMGITLITFLPASHIFVRVGFTLAERQLFFPSLGAIWIFV 291
            +LL PW L ++ ++   P   ++SD R + +  +W  +I LI   VC  D  RR R+LT  +G  +I FLPAS++F RVGF +AER ++ PS+G   +F+
Sbjct:   38 LLLCPWWLCFDWSMGCIPLIKSVSDWRIIALAALWFCLIGLICQAVCSEDSHRR-RILTLGLGFLIIPFLPASNLFFRVGFVVAERVIYLPSIGYCILFI 136
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BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Match: A0A1U7SB79_ALLSI (Dolichyl-phosphate-mannose--protein mannosyltransferase n=11 Tax=Archosauria TaxID=8492 RepID=A0A1U7SB79_ALLSI)

HSP 1 Score: 73.2 bits (178), Expect = 4.680e-13
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    1 MLLVPWGLSYEHNLFETPT--TLSDPRFVWVGVVWIVIIALIVWVVCERDLGRRWRVLT-AMGITLITFLPASHIFVRVGFTLAERQLFFPSLGAIWIFV 291
            +LL PW L ++ ++   P   ++SD R + +  +W  +I LI   VC  D  RR R+LT  +G  +I FLPAS++F RVGF +AER ++ PS+G   +F+
Sbjct:   38 LLLCPWWLCFDWSMGCIPLIKSVSDWRIIALAALWFCLIGLICQAVCSEDSHRR-RILTLGLGFLIIPFLPASNLFFRVGFVVAERVIYLPSIGYCILFI 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Match: A0A8C5EDF4_9TELE (Dolichyl-phosphate-mannose--protein mannosyltransferase n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5EDF4_9TELE)

HSP 1 Score: 73.2 bits (178), Expect = 4.990e-13
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 MLLVPWGLSYEHNLFETPT--TLSDPRFVWVGVVWIVIIALIVWVVCERDLGRRWRVLTAMGITLITFLPASHIFVRVGFTLAERQLFFPSLG 273
            +LL PW L ++ ++   P   + SD R VW+ ++W ++I LI   +C +D+ RR  +   + + L+ FLPAS++F RVGF +AER L+  S G
Sbjct:  310 LLLCPWWLCFDWSMGCVPLIKSASDWRMVWLLLLWCILIGLIGQALCSQDIQRRRTLTLGLVLLLVPFLPASNVFFRVGFVIAERVLYLSSAG 402
[Close]
BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Match: A0A8C5G6S5_9TELE (Dolichyl-phosphate-mannose--protein mannosyltransferase n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5G6S5_9TELE)

HSP 1 Score: 73.2 bits (178), Expect = 4.990e-13
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 MLLVPWGLSYEHNLFETPT--TLSDPRFVWVGVVWIVIIALIVWVVCERDLGRRWRVLTAMGITLITFLPASHIFVRVGFTLAERQLFFPSLG 273
            +LL PW L ++ ++   P   + SD R VW+ ++W ++I LI   +C +D+ RR  +   + + L+ FLPAS++F RVGF +AER L+  S G
Sbjct:  320 LLLCPWWLCFDWSMGCVPLIKSASDWRMVWLLLLWCILIGLIGQALCSQDIQRRRTLTLGLVLLLVPFLPASNVFFRVGFVIAERVLYLSSAG 412
[Close]
BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Match: G1KBZ5_ANOCA (Dolichyl-phosphate-mannose--protein mannosyltransferase n=19 Tax=Bifurcata TaxID=1329961 RepID=G1KBZ5_ANOCA)

HSP 1 Score: 73.2 bits (178), Expect = 5.000e-13
Identity = 39/94 (41.49%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:    1 MLLVPWGLSYEHNLFETPT--TLSDPRFVWVGVVWIVIIALIVWVVCERDLGRRWRVLT-AMGITLITFLPASHIFVRVGFTLAERQLFFPSLG 273
            +LL PW L ++ ++   P   ++SD R + +GV+W  +IAL+   +C  D  +R R+LT  +G  +I FLPAS++F RVGF +AER  + PS+G
Sbjct:  326 LLLCPWWLCFDWSMGCVPLIKSVSDWRIIALGVLWFCLIALMCQALCSEDSQKR-RILTLGLGFLIIPFLPASNLFFRVGFVVAERVTYLPSIG 418
[Close]
BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Match: A0A151NSG8_ALLMI (Dolichyl-phosphate-mannose--protein mannosyltransferase n=19 Tax=Archelosauria TaxID=1329799 RepID=A0A151NSG8_ALLMI)

HSP 1 Score: 73.2 bits (178), Expect = 5.000e-13
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    1 MLLVPWGLSYEHNLFETPT--TLSDPRFVWVGVVWIVIIALIVWVVCERDLGRRWRVLTAMGITLITFLPASHIFVRVGFTLAERQLFFPSLGAIWIFV 291
            +LL PW L ++ ++   P   ++SD R + +  +W  +I LI   +C  D  RR  ++  +G  +I FLPAS++F RVGF +AER ++ PS+G   +F+
Sbjct:  326 LLLCPWWLCFDWSMGCIPLIKSVSDWRIIALAALWFCLIGLICQALCSEDSHRRRILMLGLGFLIIPFLPASNLFFRVGFVVAERVIYLPSIGYCILFI 424
[Close]
BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Match: A0A8C5EDJ2_9TELE (Dolichyl-phosphate-mannose--protein mannosyltransferase n=4 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5EDJ2_9TELE)

HSP 1 Score: 73.2 bits (178), Expect = 5.000e-13
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 MLLVPWGLSYEHNLFETPT--TLSDPRFVWVGVVWIVIIALIVWVVCERDLGRRWRVLTAMGITLITFLPASHIFVRVGFTLAERQLFFPSLG 273
            +LL PW L ++ ++   P   + SD R VW+ ++W ++I LI   +C +D+ RR  +   + + L+ FLPAS++F RVGF +AER L+  S G
Sbjct:  327 LLLCPWWLCFDWSMGCVPLIKSASDWRMVWLLLLWCILIGLIGQALCSQDIQRRRTLTLGLVLLLVPFLPASNVFFRVGFVIAERVLYLSSAG 419
[Close]
BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Match: UPI000529869D (transmembrane and TPR repeat-containing protein 4 n=1 Tax=Chlamydotis macqueenii TaxID=187382 RepID=UPI000529869D)

HSP 1 Score: 71.6 bits (174), Expect = 1.670e-12
Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 MLLVPWGLSYEHNLFETPT--TLSDPRFVWVGVVWIVIIALIVWVVCERDLGRRWRVLT-AMGITLITFLPASHIFVRVGFTLAERQLFFPSLG 273
            +LL PW L ++ ++   P   ++SD R + +  +W  +I LI   +C  D+ +R R+LT  +G  +I FLPAS++F RVGF +AER ++ PS+G
Sbjct:  326 LLLCPWWLCFDWSMGCIPLIKSVSDWRIIALAALWFCLIGLICQALCSEDIHKR-RILTLGLGFLIIPFLPASNLFFRVGFVIAERVIYLPSIG 418
[Close]
BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Match: A0A8C4W1R7_9SAUR (Dolichyl-phosphate-mannose--protein mannosyltransferase n=1 Tax=Gopherus evgoodei TaxID=1825980 RepID=A0A8C4W1R7_9SAUR)

HSP 1 Score: 71.6 bits (174), Expect = 1.680e-12
Identity = 38/94 (40.43%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:    1 MLLVPWGLSYEHNLFETPT--TLSDPRFVWVGVVWIVIIALIVWVVCERDLGRRWRVLT-AMGITLITFLPASHIFVRVGFTLAERQLFFPSLG 273
            +LL PW L ++ ++   P   ++SD R + +  +W  +IALI   +C +D  +R R+LT  +G  +I FLPAS++F RVGF +AER ++ PS+G
Sbjct:   84 LLLCPWWLCFDWSMGCIPLIKSVSDWRIIALAALWFCLIALICQALCSQDSHKR-RILTLGLGFLIIPFLPASNLFFRVGFVVAERVIYLPSIG 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95174.21959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J0UGQ2_9SAUR5.570e-1440.86Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A3Q0GXC4_ALLSI3.590e-1340.00Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A1U7SB79_ALLSI4.680e-1340.00Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A8C5EDF4_9TELE4.990e-1338.71Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A8C5G6S5_9TELE4.990e-1338.71Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
G1KBZ5_ANOCA5.000e-1341.49Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A151NSG8_ALLMI5.000e-1336.36Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
A0A8C5EDJ2_9TELE5.000e-1338.71Dolichyl-phosphate-mannose--protein mannosyltransf... [more]
UPI000529869D1.670e-1239.36transmembrane and TPR repeat-containing protein 4 ... [more]
A0A8C4W1R7_9SAUR1.680e-1240.43Dolichyl-phosphate-mannose--protein mannosyltransf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95174contigM-pyrifera_M_contig95174:45..335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.4
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog28377.ENSACAP00000003423
Preferred nameTMTC4
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Domain of unknown function (DUF1736)
EggNOG OGs38CY4@33154,3BAFG@33208,3CV6Z@33213,483KS@7711,48WWG@7742,COG0457@1,KOG1124@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816866.356033-CDS-M-pyrifera_M_contig95174:44..3351622816866.356033-CDS-M-pyrifera_M_contig95174:44..335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95174 45..335 +
1692278224.6060324-CDS-M-pyrifera_M_contig95174:44..3351692278224.6060324-CDS-M-pyrifera_M_contig95174:44..335Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95174 45..335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95174.21959.1prot_M-pyrifera_M_contig95174.21959.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95174 45..335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95174.21959.1

>prot_M-pyrifera_M_contig95174.21959.1 ID=prot_M-pyrifera_M_contig95174.21959.1|Name=mRNA_M-pyrifera_M_contig95174.21959.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MLLVPWGLSYEHNLFETPTTLSDPRFVWVGVVWIVIIALIVWVVCERDLG
RRWRVLTAMGITLITFLPASHIFVRVGFTLAERQLFFPSLGAIWIFV
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mRNA from alignment at M-pyrifera_M_contig95174:45..335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95174.21959.1 ID=mRNA_M-pyrifera_M_contig95174.21959.1|Name=mRNA_M-pyrifera_M_contig95174.21959.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig95174:45..335+ (Macrocystis pyrifera P11B4 male)
ATGTTGTTGGTCCCATGGGGATTGTCCTACGAACACAATCTCTTCGAAAC
ACCAACCACTCTCTCCGATCCTCGTTTTGTATGGGTTGGAGTTGTATGGA
TTGTTATCATTGCCTTGATTGTTTGGGTTGTTTGTGAGCGTGATTTAGGG
CGACGATGGAGAGTATTGACTGCAATGGGTATTACATTGATCACTTTTCT
CCCAGCCTCTCACATTTTTGTTCGTGTTGGATTTACTCTTGCGGAAAGAC
AACTCTTCTTTCCATCCCTCGGTGCAATTTGGATCTTTGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95174:45..335+

>mRNA_M-pyrifera_M_contig95174.21959.1 ID=mRNA_M-pyrifera_M_contig95174.21959.1|Name=mRNA_M-pyrifera_M_contig95174.21959.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig95174:45..335+ (Macrocystis pyrifera P11B4 male)
ATGTTGTTGGTCCCATGGGGATTGTCCTACGAACACAATCTCTTCGAAAC
ACCAACCACTCTCTCCGATCCTCGTTTTGTATGGGTTGGAGTTGTATGGA
TTGTTATCATTGCCTTGATTGTTTGGGTTGTTTGTGAGCGTGATTTAGGG
CGACGATGGAGAGTATTGACTGCAATGGGTATTACATTGATCACTTTTCT
CCCAGCCTCTCACATTTTTGTTCGTGTTGGATTTACTCTTGCGGAAAGAC
AACTCTTCTTTCCATCCCTCGGTGCAATTTGGATCTTTGTCATGTTGTTG
GTCCCATGGGGATTGTCCTACGAACACAATCTCTTCGAAACACCAACCAC
TCTCTCCGATCCTCGTTTTGTATGGGTTGGAGTTGTATGGATTGTTATCA
TTGCCTTGATTGTTTGGGTTGTTTGTGAGCGTGATTTAGGGCGACGATGG
AGAGTATTGACTGCAATGGGTATTACATTGATCACTTTTCTCCCAGCCTC
TCACATTTTTGTTCGTGTTGGATTTACTCTTGCGGAAAGACAACTCTTCT
TTCCATCCCTCGGTGCAATTTGGATCTTTGTC
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