mRNA_M-pyrifera_M_contig95106.21950.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95106.21950.1
Unique NamemRNA_M-pyrifera_M_contig95106.21950.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Match: A0A5A8DM70_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DM70_CAFRO)

HSP 1 Score: 98.6 bits (244), Expect = 9.070e-22
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:  112 VRGGVPHSTLRGHSGSVYCCCWSPEEGGRRLLSGGHDRCVCIWDVATGTILQHLKNLHRSYVLGLTFRFDGSMFATASGDRTVGVWR 372
            +R G     L GH G  Y   ++ E GGRR+++GGHD  + IWD  +GT++Q ++  HRSY+LGL  R DG +FA+ASGDRTVG+WR
Sbjct:  250 LRTGSCMHVLAGHVGPAYSVTFTHEGGGRRIITGGHDTNIIIWDARSGTVIQKMEMTHRSYILGLAARSDGLVFASASGDRTVGLWR 336
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BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Match: A0A482UE17_9ARCH (WD40 repeat domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UE17_9ARCH)

HSP 1 Score: 91.3 bits (225), Expect = 6.270e-19
Identity = 42/122 (34.43%), Postives = 62/122 (50.82%), Query Frame = 1 
Query:    7 REIKGHEGPVLDIRISPDGTKFASSSQDGSVRIWNVRGGVPHSTLRGHSGSVYCCCWSPEEGGRRLLSGGHDRCVCIWDVATGTILQHLKNLHRSYVLGLTFRFDGSMFATASGDRTVGVWR 372
            R   GH GPV D R +  G +  ++S DGS R+W    G     LRGH  ++    +SP+ GGR                  G ++Q ++ +H  ++  L +R DG  F +ASGD+TVG+WR
Sbjct:  244 RSFIGHTGPVYDARFNHVGNRIVTASADGSARVWEFGSGECIRVLRGHGSALRSALFSPDGGGRXXXXXXXXXXXXXXXXXXGLLMQRMERVHAGFIHRLAYRTDGVFFLSASGDKTVGMWR 365
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BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Match: UPI000C76E6B7 (pre-mRNA 3' end processing protein WDR33-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76E6B7)

HSP 1 Score: 82.4 bits (202), Expect = 6.930e-16
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:   13 IKGHEGPVLDIRISPDGTKFASSSQDGSVRIWNVRGGVPHSTLRGHSGSVYCCCWSPEEGGRRLLSGGHD--RCVCIWDVATGTILQHLKNLHRSYVLGLTFRFDGSMFATASGDRTV 360
             + H+ PV  +   P  TKFAS S DG+VRIW+ +  +    LRGH   V CC W P++G   ++SG  D  + + +WD   GT+L  + + H+S V+   F  +G+   TAS D  +
Sbjct:   32 FQAHKEPVRQVAFCPTDTKFASCSDDGTVRIWDFQRCMEERVLRGHGSDVKCCDWHPQKG--IVVSGSKDNQQPLKLWDPRNGTVLTTI-HAHKSTVMDCRFNRNGNWLLTASRDHLL 146
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BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Match: R4XB74_TAPDE (U3 snoRNP-associated protein Utp13 n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XB74_TAPDE)

HSP 1 Score: 82.0 bits (201), Expect = 1.140e-15
Identity = 40/123 (32.52%), Postives = 62/123 (50.41%), Query Frame = 1 
Query:    7 REIKGHEGPVLDIRISPDGTKFASSSQDGSVRIWNVRGGVPHSTLRGHSGSVYCCCWSPEEGGR--RLLSGGHDRCVCIWDVATGTILQHLKNLHRSYVLGLTFRFDGSMFATASGDRTVGVW 369
            R++K HE PV+ I      T  A+   +G+V++W++RGG      +GH G +    +    G R  RL SG  D  + +WD+ +   L  L N H S + GL F  DG+   + S D+ +  W
Sbjct:   94 RQVKAHESPVISIETDSTSTLVATGGAEGTVKVWDIRGGFVTHNFKGHGGVISALRFYGRAGSRTWRLASGADDCKIRVWDLVSSKCLATLDN-HSSVIRGLDFSDDGNTLISGSRDQVLNTW 215
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BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Match: A0A8I6RUI8_CIMLE (Uncharacterized protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RUI8_CIMLE)

HSP 1 Score: 76.6 bits (187), Expect = 8.830e-14
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 1 
Query:   22 HEGPVLDIRISPDGTKFASSSQDGSVRIWNVRGGVPHSTLRGHSGSVYCCCWSPEEGGRRLLSGGHD--RCVCIWDVATGTILQHLKNLHRSYVLGLTFRFDGSMFATASGDRTV 360
            H+  +  I  SP  +KFAS S DG++++W+        TLRGH   V C  W P++G   ++SG  D  + V +WD  TGT L  + + H+S V+ + +  +G+ F TAS D  +
Sbjct:  218 HQEAIRGISFSPTDSKFASCSDDGTIKVWDFYRCQEERTLRGHGADVKCVHWHPQKG--LIISGSKDNQQPVKLWDPKTGTSLATI-HAHKSTVMDVKWNNNGNWFVTASRDHLL 329
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BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Match: A0A0P4VK08_9HEMI (Putative polyadenylation factor i complex subunit pfs2 (Fragment) n=2 Tax=Rhodnius TaxID=13248 RepID=A0A0P4VK08_9HEMI)

HSP 1 Score: 75.5 bits (184), Expect = 2.130e-13
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:   22 HEGPVLDIRISPDGTKFASSSQDGSVRIWNVRGGVPHSTLRGHSGSVYCCCWSPEEGGRRLLSGGHD--RCVCIWDVATGTILQHLKNLHRSYVLGLTFRFDGSMFATASGDRTV 360
            H+  +  I  SP  +KFAS S DG+V+IW+         LRGH   V C  W P++G   ++SG  D  + V +WD  TGT L  + + H+S V+ + +  +G+ F TAS D  +
Sbjct:  168 HQEAIRGISFSPTDSKFASCSDDGTVKIWDFYRCQEERILRGHGADVKCIHWHPQKG--LIISGSKDNQQPVKLWDPKTGTSLATI-HAHKSTVMDIKWNNNGNWFVTASRDHLL 279
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BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Match: A0A069DWU2_9HEMI (Putative polyadenylation factor i complex subunit pfs2 (Fragment) n=2 Tax=Triatominae TaxID=70999 RepID=A0A069DWU2_9HEMI)

HSP 1 Score: 75.5 bits (184), Expect = 2.190e-13
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:   22 HEGPVLDIRISPDGTKFASSSQDGSVRIWNVRGGVPHSTLRGHSGSVYCCCWSPEEGGRRLLSGGHD--RCVCIWDVATGTILQHLKNLHRSYVLGLTFRFDGSMFATASGDRTV 360
            H+  +  I  SP  +KFAS S DG+V+IW+         LRGH   V C  W P++G   ++SG  D  + V +WD  TGT L  + + H+S V+ + +  +G+ F TAS D  +
Sbjct:    9 HQEAIRGISFSPTDSKFASCSDDGTVKIWDFYRCQEERILRGHGADVKCIHWHPQKG--LIISGSKDNQQPVKLWDPKTGTSLATI-HAHKSTVMDIKWNNNGNWFVTASRDHLL 120
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BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Match: A0A023F3M6_TRIIF (Putative polyadenylation factor i complex subunit pfs2 (Fragment) n=2 Tax=Triatoma infestans TaxID=30076 RepID=A0A023F3M6_TRIIF)

HSP 1 Score: 75.5 bits (184), Expect = 2.250e-13
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:   22 HEGPVLDIRISPDGTKFASSSQDGSVRIWNVRGGVPHSTLRGHSGSVYCCCWSPEEGGRRLLSGGHD--RCVCIWDVATGTILQHLKNLHRSYVLGLTFRFDGSMFATASGDRTV 360
            H+  +  I  SP  +KFAS S DG+V+IW+         LRGH   V C  W P++G   ++SG  D  + V +WD  TGT L  + + H+S V+ + +  +G+ F TAS D  +
Sbjct:  213 HQEAIRGISFSPTDSKFASCSDDGTVKIWDFYRCQEERILRGHGADVKCIHWHPQKG--LIISGSKDNQQPVKLWDPKTGTSLATI-HAHKSTVMDIKWNNNGNWFVTASRDHLL 324
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BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Match: A0A7S0T0E9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T0E9_9CHLO)

HSP 1 Score: 75.1 bits (183), Expect = 2.940e-13
Identity = 45/125 (36.00%), Postives = 60/125 (48.00%), Query Frame = 1 
Query:   13 IKGHEGPVLDIRISPDGTKFASSSQDGSVRIWNVRGGVPHSTLRGHSGSVYCCCWSPEEGGRRLLSGGHDRCVCIWDVATGTILQHLKNLHRSYVLGLTFRFDG------SMFATASGDRTVGVW 369
             KGH   +  I  S D     S+S DG++ +W+   G     L GH G+V  CC+    GG R+LSGG D+ V +WDV  G        +  + + G T R  G      S FA+ S DRT  VW
Sbjct:  422 FKGHSKAIRAIAASQDMKTAVSASDDGNLMLWDTVTGQDSGILTGHKGAVLACCF--VSGGERVLSGGKDQAVRVWDV--GGXXXXXVLIAETALQGHTGRITGLASIGRSSFASCSADRTARVW 542
[Close]
BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Match: A0A8D9ESA5_9HEMI (Pre-mRNA 3' end processing protein WDR33 n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9ESA5_9HEMI)

HSP 1 Score: 74.7 bits (182), Expect = 4.210e-13
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:    7 REIKGHEGPVLDIRISPDGTKFASSSQDGSVRIWNVRGGVPHSTLRGHSGSVYCCCWSPEEGGRRLLSGGHD--RCVCIWDVATGTILQHLKNLHRSYVLGLTFRFDGSMFATASGDRTVGVW 369
            +  +GH+  V  I  SP  +KFA+ S DG+VR+W+    V    LRGH   V C  W P +    ++SG  D  + V +WD   G  L  L + H+S V+ L +  +G+   TAS D  + V+
Sbjct:  230 KTFQGHKESVRGISFSPSDSKFATCSDDGTVRVWDFYRCVEEKVLRGHGADVKCVDWHPYKS--LIVSGSKDNQQPVKLWDPKAGQALATL-HAHKSTVMDLAWNQNGNWLVTASRDHLLKVF 349
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95106.21950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DM70_CAFRO9.070e-2250.57Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A482UE17_9ARCH6.270e-1934.43WD40 repeat domain-containing protein n=1 Tax=arch... [more]
UPI000C76E6B76.930e-1636.44pre-mRNA 3' end processing protein WDR33-like n=1 ... [more]
R4XB74_TAPDE1.140e-1532.52U3 snoRNP-associated protein Utp13 n=1 Tax=Taphrin... [more]
A0A8I6RUI8_CIMLE8.830e-1435.65Uncharacterized protein n=1 Tax=Cimex lectularius ... [more]
A0A0P4VK08_9HEMI2.130e-1336.52Putative polyadenylation factor i complex subunit ... [more]
A0A069DWU2_9HEMI2.190e-1336.52Putative polyadenylation factor i complex subunit ... [more]
A0A023F3M6_TRIIF2.250e-1336.52Putative polyadenylation factor i complex subunit ... [more]
A0A7S0T0E9_9CHLO2.940e-1336.00Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A8D9ESA5_9HEMI4.210e-1334.96Pre-mRNA 3' end processing protein WDR33 n=2 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95106contigM-pyrifera_M_contig95106:303..680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score82.8
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog5011.R4XB74
Preferred nameutp13
KEGG koko:K14555
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U3 snoRNP-associated protein Utp13
EggNOG OGs38BUJ@33154,3MC38@451866,3NUNT@4751,3QMNJ@4890,KOG0319@1,KOG0319@2759
COG Functional cat.A
Best tax levelTaphrinomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.9420893-CDS-M-pyrifera_M_contig95106:302..6801622816865.9420893-CDS-M-pyrifera_M_contig95106:302..680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95106 303..680 -
1692278224.3910816-CDS-M-pyrifera_M_contig95106:302..6801692278224.3910816-CDS-M-pyrifera_M_contig95106:302..680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95106 303..680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95106.21950.1prot_M-pyrifera_M_contig95106.21950.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95106 303..680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95106.21950.1

>prot_M-pyrifera_M_contig95106.21950.1 ID=prot_M-pyrifera_M_contig95106.21950.1|Name=mRNA_M-pyrifera_M_contig95106.21950.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
LRREIKGHEGPVLDIRISPDGTKFASSSQDGSVRIWNVRGGVPHSTLRGH
SGSVYCCCWSPEEGGRRLLSGGHDRCVCIWDVATGTILQHLKNLHRSYVL
GLTFRFDGSMFATASGDRTVGVWRGQ
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mRNA from alignment at M-pyrifera_M_contig95106:303..680-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95106.21950.1 ID=mRNA_M-pyrifera_M_contig95106.21950.1|Name=mRNA_M-pyrifera_M_contig95106.21950.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig95106:303..680- (Macrocystis pyrifera P11B4 male)
CTACGTCGCGAAATCAAAGGACATGAAGGACCTGTGTTGGACATTCGAAT
CAGCCCAGATGGAACCAAGTTTGCTTCTTCCAGCCAAGATGGAAGTGTTC
GAATTTGGAATGTACGTGGTGGAGTCCCTCATTCCACACTTCGTGGCCAC
TCTGGATCTGTATATTGCTGCTGCTGGAGTCCAGAAGAAGGAGGGAGGAG
GCTGTTGAGTGGTGGACATGATCGATGTGTGTGTATTTGGGACGTTGCCA
CTGGGACTATTCTGCAACATCTCAAAAACCTCCATCGCTCCTACGTCCTT
GGTCTCACGTTTCGTTTCGATGGATCCATGTTCGCCACTGCATCTGGAGA
CCGCACAGTTGGAGTGTGGCGTGGTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95106:303..680-

>mRNA_M-pyrifera_M_contig95106.21950.1 ID=mRNA_M-pyrifera_M_contig95106.21950.1|Name=mRNA_M-pyrifera_M_contig95106.21950.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig95106:303..680- (Macrocystis pyrifera P11B4 male)
CTACGTCGCGAAATCAAAGGACATGAAGGACCTGTGTTGGACATTCGAAT
CAGCCCAGATGGAACCAAGTTTGCTTCTTCCAGCCAAGATGGAAGTGTTC
GAATTTGGAATGTACGTGGTGGAGTCCCTCATTCCACACTTCGTGGCCAC
TCTGGATCTGTATATTGCTGCTGCTGGAGTCCAGAAGAAGGAGGGAGGAG
GCTGTTGAGTGGTGGACATGATCGATGTGTGTGTATTTGGGACGTTGCCA
CTGGGACTATTCTGCAACATCTCAAAAACCTCCATCGCTCCTACGTCCTT
GGTCTCACGTTTCGTTTCGATGGATCCATGTTCGCCACTGCATCTGGAGA
CCGCACAGTTGGAGTGTGGCGTGGTCAGCTACGTCGCGAAATCAAAGGAC
ATGAAGGACCTGTGTTGGACATTCGAATCAGCCCAGATGGAACCAAGTTT
GCTTCTTCCAGCCAAGATGGAAGTGTTCGAATTTGGAATGTACGTGGTGG
AGTCCCTCATTCCACACTTCGTGGCCACTCTGGATCTGTATATTGCTGCT
GCTGGAGTCCAGAAGAAGGAGGGAGGAGGCTGTTGAGTGGTGGACATGAT
CGATGTGTGTGTATTTGGGACGTTGCCACTGGGACTATTCTGCAACATCT
CAAAAACCTCCATCGCTCCTACGTCCTTGGTCTCACGTTTCGTTTCGATG
GATCCATGTTCGCCACTGCATCTGGAGACCGCACAGTTGGAGTGTGGCGT
GGTCAG
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