mRNA_M-pyrifera_M_contig95071.21941.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95071.21941.1
Unique NamemRNA_M-pyrifera_M_contig95071.21941.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Match: F1A4S9_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A4S9_DICPU)

HSP 1 Score: 89.7 bits (221), Expect = 7.870e-19
Identity = 35/73 (47.95%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    4 VFRNGDVHHKGERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIYAPDGREIKALSEFENQGCYICCGSHKL 222
             +RNGD +HKGER+ IH TKF T+DQ+ ++ +++V+LPTG+VR+ ++ DG+ +K + +F +  CYICCG   L
Sbjct:  188 AYRNGDKYHKGERVTIHSTKFKTYDQLKEQLSKQVQLPTGSVRKAFSADGKLVKTMDDFVDGDCYICCGGEPL 260          
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Match: A0A151ZD72_9MYCE (Doublecortin domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZD72_9MYCE)

HSP 1 Score: 87.8 bits (216), Expect = 7.580e-18
Identity = 37/73 (50.68%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    4 VFRNGDVHHKGERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIYAPDGREIKALSEFENQGCYICCGSHKL 222
             FRNGD  H GER+ IH TKF T+DQ+ ++ +++VKL TG+VR++Y+ DG+++K L++F + G YICCG   L
Sbjct:  222 AFRNGDKFHGGERVTIHSTKFKTYDQLKEQLSKQVKLVTGSVRKVYSVDGKQVKDLNDFIDGGYYICCGGEVL 294          
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Match: A0A2P6NXM1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXM1_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 8.900e-16
Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 1
Query:    4 VFRNGDVHHKGERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIYAPDGREIKALSEFENQGCYICCGSHKLKKDQRKKAVGLVKKSTN-----------NVSVPKAAGGASARAARTPTKA-----GTPKKQKFGLQTEKGKVIWVYRNGDKHHEGDRFVV 444
            VFRN D HH+G ++++     +TF+Q+L + T  V LPTG VR++Y  DG+ +K L +  +   YI  G  K+  +   +++  ++KS +                  A  A A +A TP K+     G    +KFG Q EK K I+ YRN DKHH G +  V
Sbjct:   22 VFRNADKHHQGVQVLVR--PGITFEQLLQQLTTVVGLPTGAVRKLYTADGKSVKTLDDVLDGHNYIAAGPEKVNLESASESLKELEKSKSVKEEXXXXXXXXXXXXXEAEDAKAASA-TPKKSVVSAYGGKPLEKFGTQGEKAKTIYAYRNADKHHAGVKVAV 181          
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Match: B3RTF1_TRIAD (Doublecortin domain-containing protein n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RTF1_TRIAD)

HSP 1 Score: 77.0 bits (188), Expect = 8.250e-15
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    4 VFRNGDVHHKGERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIY-APDGREI-KALSEFENQGCYICC 207
            ++RNGD HH GE+LV+   KF TFDQ+L  +T  V+L TG V++IY AP+ +++ K L++FEN G Y+CC
Sbjct:   92 LYRNGDKHHTGEKLVMKKEKFRTFDQMLQASTNAVRLTTGPVKKIYKAPELKKVMKNLTDFENNGKYLCC 161          
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Match: DCX_DICDI (Protein doublecortin n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=DCX_DICDI)

HSP 1 Score: 75.5 bits (184), Expect = 2.150e-13
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    7 FRNGDVHHKGERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIY-APDGREIKALSEFENQGCYICCGSHKL 222
            FRNGD +H GER+ +H TKF T+DQ+ ++ +++VKLPTG VR++Y A  G+ +K + E  +   Y+C G   L
Sbjct:  199 FRNGDRYHSGERVTVHSTKFKTYDQLKEQLSKQVKLPTGPVRKLYLASSGKLVKTMEEIIDGEYYVCAGGETL 271          
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Match: D3BKU2_POLPP (Doublecortin domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BKU2_POLPP)

HSP 1 Score: 70.9 bits (172), Expect = 1.020e-11
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    4 VFRNGDVHH-KGERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIYAPDGREIKALSEFENQGCYICCGSHKLKKD 231
             +RN D +  +G R+VIH TK+ T+DQ+  E +++V L TG V+R+Y+   + IK L +FE+   YICCG+ KL +D
Sbjct:   27 AWRNADKYQVEGVRIVIHSTKYKTYDQLKVELSQKVGLYTGAVQRVYSTQKKLIKGLEDFEDNQNYICCGAEKLSED 103          
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Match: A0A507C5X0_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C5X0_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 3.370e-11
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 QVFRNGDVHHKGERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIYAPDGREIKALSEFENQGCYICCGSHKLK 225
            +VF+NGDV   G R+V+    +  F+Q L   +R V L TG +RRIY  DGR +++LS+F + G Y+  G    K
Sbjct:   13 RVFKNGDVFSPGRRVVVSTRVYRNFEQFLQAASREVNLRTGAIRRIYTLDGRPVRSLSDFNDNGLYVAAGGEPFK 87          
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Match: A0A5J4WWS6_9EUKA (Uncharacterized protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WWS6_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 1.220e-10
Identity = 45/149 (30.20%), Postives = 76/149 (51.01%), Query Frame = 1
Query:    4 VFRNGDVHHKGERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIYAPDGREIKALSEFENQGCYICCGSHKLKKDQRKKAVGLVKKSTNNVSVPKAAGGASARAARTPTKAGTPKK--QKFGLQTEKGKVIWVYRNGDKHHEGDRFVV 444
            VFRNGD++ KG R+ +  +   + +++    T   +L TG+ R++  P G  I +L EFE+    I C    L      +   +++K        +    +     R  + + TPK+  + FG+QTEK KVI+V+RNGD + +G R  +
Sbjct:  139 VFRNGDIYDKGARITLK-SSVTSMEKLYKLVTSECQLVTGSCRKLVTPTGDIINSLQEFEDYSNLIACAGEPL---NLTRLPIILRKKIKKEKPEQEEEQSPIEQQRPSSNSPTPKRPLKMFGVQTEKAKVIFVFRNGDIYDKGTRITL 283          
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Match: F4PLG5_CAVFA (Doublecortin domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PLG5_CAVFA)

HSP 1 Score: 67.0 bits (162), Expect = 1.820e-10
Identity = 54/177 (30.51%), Postives = 81/177 (45.76%), Query Frame = 1
Query:    4 VFRNGDVHHK-GERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIYAPDGREIKALSEFENQGCYICCGSHKLKKDQRKKAVGLV-----------------------------KKSTNNVSVPKAAGGASARAARTPTKAGTPKKQKFGLQTEKGKVIWVYRNGDKHHEGDRFVV 444
            V+RN D + + G R+V+H TKF T+DQ+  E   ++KL TG+V+++Y  D + +K L +  +   YI C + KL  D+   A GLV                                      PK A  +S     T   +G  + + F    EK KVIW +RN D +H+G+R  V
Sbjct:   31 VWRNADRYQEEGVRIVVHPTKFKTYDQLKTELNAKIKLVTGSVQKLYGMDKKLVKGLDDLVDGENYIVCAAEKL--DESIVAKGLVGLFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKAPVSSV----TSPPSGPKRFESF----EKSKVIWAFRNTDDNHKGERITV 197          
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Match: A0A7M7RE12_STRPU (Uncharacterized protein n=5 Tax=Echinacea TaxID=7674 RepID=A0A7M7RE12_STRPU)

HSP 1 Score: 65.5 bits (158), Expect = 1.470e-9
Identity = 30/74 (40.54%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    7 FRNGDVHHKGERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIYAPDGREIKALSEFENQGCYICCGSHKLKK 228
            FRNGD   KG++++I   ++ +F+ +L E TR +KLP G VR+I+ PDG +++ + E +N   Y+C    +LKK
Sbjct:  117 FRNGDRFFKGKKMLITPHRYTSFEDLLSELTRDMKLPYG-VRQIFTPDGTKVRDIEELKNGESYVCASFERLKK 189          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95071.21941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
F1A4S9_DICPU7.870e-1947.95Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A151ZD72_9MYCE7.580e-1850.68Doublecortin domain-containing protein n=1 Tax=Tie... [more]
A0A2P6NXM1_9EUKA8.900e-1634.36Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
B3RTF1_TRIAD8.250e-1551.43Doublecortin domain-containing protein n=1 Tax=Tri... [more]
DCX_DICDI2.150e-1345.21Protein doublecortin n=1 Tax=Dictyostelium discoid... [more]
D3BKU2_POLPP1.020e-1144.16Doublecortin domain-containing protein n=1 Tax=Pol... [more]
A0A507C5X0_9FUNG3.370e-1141.33Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A5J4WWS6_9EUKA1.220e-1030.20Uncharacterized protein n=1 Tax=Streblomastix stri... [more]
F4PLG5_CAVFA1.820e-1030.51Doublecortin domain-containing protein n=1 Tax=Cav... [more]
A0A7M7RE12_STRPU1.470e-940.54Uncharacterized protein n=5 Tax=Echinacea TaxID=76... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95071contigM-pyrifera_M_contig95071:181..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue2.1e-15
Seed eggNOG ortholog5786.XP_003294672.1
KEGG koko:K08805,ko:K16579,ko:K19538
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005856,GO:0005874,GO:0005879,GO:0005881,GO:0005929,GO:0005930,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0015630,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0032838,GO:0035556,GO:0035869,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0097014,GO:0097546,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120038
EggNOG free text desc.Doublecortin
EggNOG OGs3X9KS@554915,KOG3757@1,KOG3757@2759
EC2.7.11.1
COG Functional cat.Z
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036,ko04812
Exons3
Model size444
Cds size444
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95071.21941.1prot_M-pyrifera_M_contig95071.21941.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95071 181..733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.5649505-CDS-M-pyrifera_M_contig95071:180..2611622816865.5649505-CDS-M-pyrifera_M_contig95071:180..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95071 181..261 +
1692278224.1817904-CDS-M-pyrifera_M_contig95071:180..2611692278224.1817904-CDS-M-pyrifera_M_contig95071:180..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95071 181..261 +
1622816865.5779858-CDS-M-pyrifera_M_contig95071:317..4751622816865.5779858-CDS-M-pyrifera_M_contig95071:317..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95071 318..475 +
1692278224.199413-CDS-M-pyrifera_M_contig95071:317..4751692278224.199413-CDS-M-pyrifera_M_contig95071:317..475Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95071 318..475 +
1622816865.5911984-CDS-M-pyrifera_M_contig95071:528..7331622816865.5911984-CDS-M-pyrifera_M_contig95071:528..733Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95071 529..733 +
1692278224.2105176-CDS-M-pyrifera_M_contig95071:528..7331692278224.2105176-CDS-M-pyrifera_M_contig95071:528..733Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95071 529..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95071.21941.1

>prot_M-pyrifera_M_contig95071.21941.1 ID=prot_M-pyrifera_M_contig95071.21941.1|Name=mRNA_M-pyrifera_M_contig95071.21941.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
QVFRNGDVHHKGERLVIHHTKFLTFDQVLDETTRRVKLPTGTVRRIYAPD
GREIKALSEFENQGCYICCGSHKLKKDQRKKAVGLVKKSTNNVSVPKAAG
GASARAARTPTKAGTPKKQKFGLQTEKGKVIWVYRNGDKHHEGDRFVV
back to top

mRNA from alignment at M-pyrifera_M_contig95071:181..733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95071.21941.1 ID=mRNA_M-pyrifera_M_contig95071.21941.1|Name=mRNA_M-pyrifera_M_contig95071.21941.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=553bp|location=Sequence derived from alignment at M-pyrifera_M_contig95071:181..733+ (Macrocystis pyrifera P11B4 male)
CAGGTCTTCCGCAATGGAGACGTACACCACAAGGGCGAACGCCTCGTGAT CCATCACACCAAGTTCTTGACGTTCGATCAGGTACGATGTTGCAGCGGCT TGCAATGGGAGGGCTACATTGCTGACTTCAATCTTAGGTGCTTGACGAGA CTACTAGGCGAGTGAAGCTCCCCACTGGCACGGTCCGCCGCATCTATGCC CCAGATGGAAGAGAGATCAAAGCGCTCTCTGAATTTGAGAACCAGGGCTG CTACATCTGCTGTGGCTCGCACAAGCTGAAGAAAGACCAGCGTAAGTGAT TTTATCCCCTCCGCACCACACTCCTCGTATTCCAGCAATCTGCAAGAGGA AAGCGGTGGGATTGGTGAAGAAATCAACTAACAATGTATCAGTTCCTAAG GCTGCAGGAGGAGCCTCCGCGAGAGCTGCCCGCACCCCTACCAAGGCAGG CACTCCCAAGAAGCAGAAGTTTGGCCTGCAGACAGAGAAGGGCAAAGTGA TCTGGGTCTATCGCAACGGAGACAAGCACCACGAAGGAGACCGATTCGTC GTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig95071:181..733+

>mRNA_M-pyrifera_M_contig95071.21941.1 ID=mRNA_M-pyrifera_M_contig95071.21941.1|Name=mRNA_M-pyrifera_M_contig95071.21941.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig95071:181..733+ (Macrocystis pyrifera P11B4 male)
CAGGTCTTCCGCAATGGAGACGTACACCACAAGGGCGAACGCCTCGTGAT
CCATCACACCAAGTTCTTGACGTTCGATCAGCAGGTCTTCCGCAATGGAG
ACGTACACCACAAGGGCGAACGCCTCGTGATCCATCACACCAAGTTCTTG
ACGTTCGATCAGGTGCTTGACGAGACTACTAGGCGAGTGAAGCTCCCCAC
TGGCACGGTCCGCCGCATCTATGCCCCAGATGGAAGAGAGATCAAAGCGC
TCTCTGAATTTGAGAACCAGGGCTGCTACATCTGCTGTGGCTCGCACAAG
CTGAAGAAAGACCAGCGTAAGTGCTTGACGAGACTACTAGGCGAGTGAAG
CTCCCCACTGGCACGGTCCGCCGCATCTATGCCCCAGATGGAAGAGAGAT
CAAAGCGCTCTCTGAATTTGAGAACCAGGGCTGCTACATCTGCTGTGGCT
CGCACAAGCTGAAGAAAGACCAGCGTAAGAAAGCGGTGGGATTGGTGAAG
AAATCAACTAACAATGTATCAGTTCCTAAGGCTGCAGGAGGAGCCTCCGC
GAGAGCTGCCCGCACCCCTACCAAGGCAGGCACTCCCAAGAAGCAGAAGT
TTGGCCTGCAGACAGAGAAGGGCAAAGTGATCTGGGTCTATCGCAACGGA
GACAAGCACCACGAAGGAGACCGATTCGTCGTGGAAAGCGGTGGGATTGG
TGAAGAAATCAACTAACAATGTATCAGTTCCTAAGGCTGCAGGAGGAGCC
TCCGCGAGAGCTGCCCGCACCCCTACCAAGGCAGGCACTCCCAAGAAGCA
GAAGTTTGGCCTGCAGACAGAGAAGGGCAAAGTGATCTGGGTCTATCGCA
ACGGAGACAAGCACCACGAAGGAGACCGATTCGTCGTG
back to top