mRNA_M-pyrifera_M_contig9507.21939.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9507.21939.1
Unique NamemRNA_M-pyrifera_M_contig9507.21939.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9507.21939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9507contigM-pyrifera_M_contig9507:8196..8537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.3319597-UTR-M-pyrifera_M_contig9507:8195..82011622816865.3319597-UTR-M-pyrifera_M_contig9507:8195..8201Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9507 8196..8201 +
1692278224.0194135-UTR-M-pyrifera_M_contig9507:8195..82011692278224.0194135-UTR-M-pyrifera_M_contig9507:8195..8201Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9507 8196..8201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.3430371-CDS-M-pyrifera_M_contig9507:8201..85371622816865.3430371-CDS-M-pyrifera_M_contig9507:8201..8537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9507 8202..8537 +
1692278224.0316696-CDS-M-pyrifera_M_contig9507:8201..85371692278224.0316696-CDS-M-pyrifera_M_contig9507:8201..8537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9507 8202..8537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9507.21939.1prot_M-pyrifera_M_contig9507.21939.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9507 8202..8537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9507.21939.1

>prot_M-pyrifera_M_contig9507.21939.1 ID=prot_M-pyrifera_M_contig9507.21939.1|Name=mRNA_M-pyrifera_M_contig9507.21939.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MPTTFIRQGTSMSTSQLKVYPRKKNLTTTIQRKSVLPRRREYAHTVIYDL
KSLPLIFHRYGKRKQKANLRGYSRRITGTKTNARRPHFGNHTLAPYCRSS
SESSVPHVHRRR
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mRNA from alignment at M-pyrifera_M_contig9507:8196..8537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9507.21939.1 ID=mRNA_M-pyrifera_M_contig9507.21939.1|Name=mRNA_M-pyrifera_M_contig9507.21939.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig9507:8196..8537+ (Macrocystis pyrifera P11B4 male)
TGTTGAATGCCGACGACATTCATTCGCCAAGGAACAAGCATGTCCACATC
GCAACTCAAAGTCTACCCGCGAAAAAAAAATCTCACCACTACGATCCAAA
GGAAATCGGTGCTACCAAGGCGCCGAGAGTACGCCCACACGGTTATTTAT
GATCTTAAGTCCTTGCCACTCATTTTTCACAGGTACGGCAAAAGAAAACA
AAAAGCAAACTTGCGAGGCTACAGCAGACGAATAACAGGCACAAAAACTA
ATGCTCGACGTCCTCATTTTGGCAACCATACTCTGGCACCCTACTGCAGA
TCGAGCTCTGAGTCGTCAGTCCCGCACGTGCACCGTAGGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9507:8196..8537+

>mRNA_M-pyrifera_M_contig9507.21939.1 ID=mRNA_M-pyrifera_M_contig9507.21939.1|Name=mRNA_M-pyrifera_M_contig9507.21939.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig9507:8196..8537+ (Macrocystis pyrifera P11B4 male)
ATGCCGACGACATTCATTCGCCAAGGAACAAGCATGTCCACATCGCAACT
CAAAGTCTACCCGCGAAAAAAAAATCTCACCACTACGATCCAAAGGAAAT
CGGTGCTACCAAGGCGCCGAGAGTACGCCCACACGGTTATTTATGATCTT
AAGTCCTTGCCACTCATTTTTCACAGGTACGGCAAAAGAAAACAAAAAGC
AAACTTGCGAGGCTACAGCAGACGAATAACAGGCACAAAAACTAATGCTC
GACGTCCTCATTTTGGCAACCATACTCTGGCACCCTACTGCAGATCGAGC
TCTGAGTCGTCAGTCCCGCACGTGCACCGTAGGCGTATGCCGACGACATT
CATTCGCCAAGGAACAAGCATGTCCACATCGCAACTCAAAGTCTACCCGC
GAAAAAAAAATCTCACCACTACGATCCAAAGGAAATCGGTGCTACCAAGG
CGCCGAGAGTACGCCCACACGGTTATTTATGATCTTAAGTCCTTGCCACT
CATTTTTCACAGGTACGGCAAAAGAAAACAAAAAGCAAACTTGCGAGGCT
ACAGCAGACGAATAACAGGCACAAAAACTAATGCTCGACGTCCTCATTTT
GGCAACCATACTCTGGCACCCTACTGCAGATCGAGCTCTGAGTCGTCAGT
CCCGCACGTGCACCGTAGGCGT
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