mRNA_M-pyrifera_M_contig95065.21936.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95065.21936.1
Unique NamemRNA_M-pyrifera_M_contig95065.21936.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig95065.21936.1 vs. uniprot
Match: A0A2E7C7T2_9GAMM (ATPgrasp_ST domain-containing protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2E7C7T2_9GAMM)

HSP 1 Score: 159 bits (401), Expect = 2.060e-45
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = 1 
Query:    1 LKAPQPNDHYENTKLANSSKKAPTGTLADIVRQTLRRAREGHLPVYRQVAEMLVLRLVYGLGPRHYHVARFWRRDLPWSFKTGFWTYKKFRRFV 282
            ++A Q  +H+ENTKLA +SK+  T TLADIVRQTLRR+REGHLP YRQVAEM+VLRLVYGLGPRHYH+AR+WRR LPW+FKTGFWTYKKFRRFV
Sbjct:    9 VEALQLKNHHENTKLATNSKQTSTATLADIVRQTLRRSREGHLPAYRQVAEMIVLRLVYGLGPRHYHIARYWRRGLPWAFKTGFWTYKKFRRFV 102
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BLAST of mRNA_M-pyrifera_M_contig95065.21936.1 vs. uniprot
Match: UPI000F0B0AC7 (hypothetical protein n=1 Tax=Haliea alexandrii TaxID=2448162 RepID=UPI000F0B0AC7)

HSP 1 Score: 113 bits (283), Expect = 3.620e-28
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   76 TLADIVRQTLRRAREGHLPVYRQVAEMLVLRLVYGLGPRHYHVARFWRRDLPWSFKTGFWTYKKFRRFV 282
            TL  +VRQTLRRA EGHL   RQ  EML+LR++YGLGP HYHVAR+WRRDLPW FK+GFWTYKKFR  V
Sbjct:   12 TLGGVVRQTLRRASEGHLAASRQFVEMLILRVLYGLGPGHYHVARYWRRDLPWRFKSGFWTYKKFRHHV 80
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BLAST of mRNA_M-pyrifera_M_contig95065.21936.1 vs. uniprot
Match: A0A3C1KT51_9GAMM (ATPgrasp_ST domain-containing protein n=2 Tax=Haliea TaxID=475794 RepID=A0A3C1KT51_9GAMM)

HSP 1 Score: 85.1 bits (209), Expect = 1.140e-17
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:  154 MLVLRLVYGLGPRHYHVARFWRRDLPWSFKTGFWTYKKFRRFV 282
            ML+LR+ YGLGP HYH+ARFWRRDLPW FK+GFWTYKKFR +V
Sbjct:    1 MLILRVFYGLGPGHYHIARFWRRDLPWRFKSGFWTYKKFRHYV 43
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BLAST of mRNA_M-pyrifera_M_contig95065.21936.1 vs. uniprot
Match: A0A356VL36_9GAMM (ATPgrasp_ST domain-containing protein n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A356VL36_9GAMM)

HSP 1 Score: 82.4 bits (202), Expect = 1.120e-16
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  154 MLVLRLVYGLGPRHYHVARFWRRDLPWSFKTGFWTYKKFRRFV 282
            MLVLRL YGLGPRHYHVAR WRR+L W FKTGFW Y KFRRF+
Sbjct:    1 MLVLRLAYGLGPRHYHVARHWRRELAWEFKTGFWNYPKFRRFL 43
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BLAST of mRNA_M-pyrifera_M_contig95065.21936.1 vs. uniprot
Match: A0A3C0Q732_9GAMM (ATPgrasp_ST domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0Q732_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 7.510e-11
Identity = 31/70 (44.29%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   64 APTGTLADIVRQTLRRAREGHLPVYRQVAEMLVLRLVYGLGPRHYHVARFWRRDLPWSFKTGFWTYKKFR 273
            +P G L    +    RAR+GHLP+YRQ+ EM  L +  G GP +YH A FWRR++PW  KT     +++R
Sbjct:    6 SPLGKLRIYGQLVQHRARQGHLPIYRQLLEMFALWIWRGQGPGYYHAAGFWRREIPWQDKTLHMNMREYR 75
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BLAST of mRNA_M-pyrifera_M_contig95065.21936.1 vs. uniprot
Match: UPI001F29E75D (hypothetical protein n=1 Tax=Permianibacter fluminis TaxID=2738515 RepID=UPI001F29E75D)

HSP 1 Score: 60.5 bits (145), Expect = 1.190e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  112 AREGHLPVYRQVAEMLVLRLVYGLGPRHYHVARFWRRDLPWSFK 243
            A+ G LPV RQ AEMLVL+L+  LGP +YHVARFWRR++P+  K
Sbjct:   15 AQHGGLPVTRQFAEMLVLKLLRDLGPNYYHVARFWRREIPFRNK 58
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BLAST of mRNA_M-pyrifera_M_contig95065.21936.1 vs. uniprot
Match: A0A496WME7_9GAMM (ATPgrasp_ST domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496WME7_9GAMM)

HSP 1 Score: 50.4 bits (119), Expect = 4.040e-5
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:  112 AREGHLPVYRQVAEMLVLRLVYGLGPRHYHVARFWRRDLPWSFKTGFWTYKKFRR 276
            A +GHLPV+RQ  EMLV+ L   +GP +Y   RF RRDL +S K  ++  K +++
Sbjct:   16 ALQGHLPVWRQCYEMLVIYLKCQIGPGYYLAGRFGRRDLSFSDKLNYYNAKGYKK 70
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95065.21936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2E7C7T2_9GAMM2.060e-4578.72ATPgrasp_ST domain-containing protein n=1 Tax=Hali... [more]
UPI000F0B0AC73.620e-2873.91hypothetical protein n=1 Tax=Haliea alexandrii Tax... [more]
A0A3C1KT51_9GAMM1.140e-1779.07ATPgrasp_ST domain-containing protein n=2 Tax=Hali... [more]
A0A356VL36_9GAMM1.120e-1681.40ATPgrasp_ST domain-containing protein n=1 Tax=Hali... [more]
A0A3C0Q732_9GAMM7.510e-1144.29ATPgrasp_ST domain-containing protein n=1 Tax=Gamm... [more]
UPI001F29E75D1.190e-863.64hypothetical protein n=1 Tax=Permianibacter flumin... [more]
A0A496WME7_9GAMM4.040e-545.45ATPgrasp_ST domain-containing protein n=1 Tax=Gamm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95065contigM-pyrifera_M_contig95065:451..732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816865.2649853-CDS-M-pyrifera_M_contig95065:450..7321622816865.2649853-CDS-M-pyrifera_M_contig95065:450..732Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95065 451..732 +
1692278223.9973185-CDS-M-pyrifera_M_contig95065:450..7321692278223.9973185-CDS-M-pyrifera_M_contig95065:450..732Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95065 451..732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95065.21936.1prot_M-pyrifera_M_contig95065.21936.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95065 451..732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95065.21936.1

>prot_M-pyrifera_M_contig95065.21936.1 ID=prot_M-pyrifera_M_contig95065.21936.1|Name=mRNA_M-pyrifera_M_contig95065.21936.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
LKAPQPNDHYENTKLANSSKKAPTGTLADIVRQTLRRAREGHLPVYRQVA
EMLVLRLVYGLGPRHYHVARFWRRDLPWSFKTGFWTYKKFRRFV
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mRNA from alignment at M-pyrifera_M_contig95065:451..732+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95065.21936.1 ID=mRNA_M-pyrifera_M_contig95065.21936.1|Name=mRNA_M-pyrifera_M_contig95065.21936.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig95065:451..732+ (Macrocystis pyrifera P11B4 male)
CTCAAGGCACCACAACCTAACGACCACTACGAGAATACCAAATTGGCAAA
TAGTTCAAAGAAAGCACCTACCGGGACTCTCGCTGACATAGTACGCCAGA
CGCTGCGACGAGCGAGGGAGGGCCACCTGCCTGTCTACCGCCAGGTGGCG
GAAATGCTTGTATTGCGTCTCGTTTATGGTTTGGGGCCAAGACACTACCA
CGTTGCGCGATTCTGGCGCCGGGATCTACCGTGGTCATTCAAAACAGGCT
TCTGGACCTACAAGAAATTTCGTCGCTTTGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95065:451..732+

>mRNA_M-pyrifera_M_contig95065.21936.1 ID=mRNA_M-pyrifera_M_contig95065.21936.1|Name=mRNA_M-pyrifera_M_contig95065.21936.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig95065:451..732+ (Macrocystis pyrifera P11B4 male)
CTCAAGGCACCACAACCTAACGACCACTACGAGAATACCAAATTGGCAAA
TAGTTCAAAGAAAGCACCTACCGGGACTCTCGCTGACATAGTACGCCAGA
CGCTGCGACGAGCGAGGGAGGGCCACCTGCCTGTCTACCGCCAGGTGGCG
GAAATGCTTGTATTGCGTCTCGTTTATGGTTTGGGGCCAAGACACTACCA
CGTTGCGCGATTCTGGCGCCGGGATCTACCGTGGTCATTCAAAACAGGCT
TCTGGACCTACAAGAAATTTCGTCGCTTTGTACTCAAGGCACCACAACCT
AACGACCACTACGAGAATACCAAATTGGCAAATAGTTCAAAGAAAGCACC
TACCGGGACTCTCGCTGACATAGTACGCCAGACGCTGCGACGAGCGAGGG
AGGGCCACCTGCCTGTCTACCGCCAGGTGGCGGAAATGCTTGTATTGCGT
CTCGTTTATGGTTTGGGGCCAAGACACTACCACGTTGCGCGATTCTGGCG
CCGGGATCTACCGTGGTCATTCAAAACAGGCTTCTGGACCTACAAGAAAT
TTCGTCGCTTTGTA
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