mRNA_M-pyrifera_M_contig95015.21928.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig95015.21928.1
Unique NamemRNA_M-pyrifera_M_contig95015.21928.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig95015.21928.1 vs. uniprot
Match: A0A2E7K6G5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K6G5_9PLAN)

HSP 1 Score: 453 bits (1166), Expect = 2.800e-149
Identity = 234/244 (95.90%), Postives = 239/244 (97.95%), Query Frame = 1
Query:    1 LSIQEAMEALSQMTLPKHFEELARISDHIAESSASDLIRYLELLVRSDDQKKAPPVLNRLRKQYPELAARITPFLAHYQPSEELARAQTVYQNTKAQEEDLQAAINVLFKYAEPTDIVKLAYRKGLPQRMNQRLVRAIAEKGGDESAYPFVEAYYLEFIQGQKADNDLTCVSAFEEIGDQRAIPYLREIVKKSERKEDAAHAIGNIIFDKRIKKKIDYHKLEKLDENIRTLFRDPAYITEKERT 732
            LSIQEAMEALSQMTLPKHFEEL R+SDH+AESSASDLIRYLELLVRSDDQKKAPPVLNRLRKQYPELAARITPFLA YQPSEELARAQ VYQN+KAQEE+LQAAINVLFKYAEPTDIVKL YRKGLPQRMNQRLVRAIAEKGGDESAYPFVEAYYLEFIQGQKADNDLTCVSAFEEIGDQRAIPYLREIVK SERKEDAAHAIGNIIFDKRIKKKIDYHK+EKLDENIRTLFRDPAYITEKERT
Sbjct:  764 LSIQEAMEALSQMTLPKHFEELVRVSDHVAESSASDLIRYLELLVRSDDQKKAPPVLNRLRKQYPELAARITPFLAQYQPSEELARAQNVYQNSKAQEEELQAAINVLFKYAEPTDIVKLTYRKGLPQRMNQRLVRAIAEKGGDESAYPFVEAYYLEFIQGQKADNDLTCVSAFEEIGDQRAIPYLREIVKNSERKEDAAHAIGNIIFDKRIKKKIDYHKMEKLDENIRTLFRDPAYITEKERT 1007          
BLAST of mRNA_M-pyrifera_M_contig95015.21928.1 vs. uniprot
Match: A0A2E2CCZ9_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CCZ9_9PLAN)

HSP 1 Score: 424 bits (1091), Expect = 2.920e-138
Identity = 220/244 (90.16%), Postives = 231/244 (94.67%), Query Frame = 1
Query:    1 LSIQEAMEALSQMTLPKHFEELARISDHIAESSASDLIRYLELLVRSDDQKKAPPVLNRLRKQYPELAARITPFLAHYQPSEELARAQTVYQNTKAQEEDLQAAINVLFKYAEPTDIVKLAYRKGLPQRMNQRLVRAIAEKGGDESAYPFVEAYYLEFIQGQKADNDLTCVSAFEEIGDQRAIPYLREIVKKSERKEDAAHAIGNIIFDKRIKKKIDYHKLEKLDENIRTLFRDPAYITEKERT 732
            LSIQEAMEALSQMTLP+HFEEL R+SDH+AESS S  IRYLELLVRSD QKKAPPVLNRLRK+YPELAARITPFLA YQ +EE+ARAQTVYQNTKAQEE+LQAAINVLFKYAEPTDIVKLA RKGLPQRMNQRLVRAIAEKGGDESAYPFVEAYYLEFIQGQKADNDLTCVSAFEEIGDQRAIPYLREIVK SERKEDAAHAIGNIIFDKR K+KIDY+KL+ LDENI T+FRDP YITEKERT
Sbjct:  761 LSIQEAMEALSQMTLPEHFEELVRVSDHVAESSESAFIRYLELLVRSDHQKKAPPVLNRLRKKYPELAARITPFLAQYQTAEEIARAQTVYQNTKAQEEELQAAINVLFKYAEPTDIVKLASRKGLPQRMNQRLVRAIAEKGGDESAYPFVEAYYLEFIQGQKADNDLTCVSAFEEIGDQRAIPYLREIVKNSERKEDAAHAIGNIIFDKRSKRKIDYNKLQMLDENIHTIFRDPTYITEKERT 1004          
BLAST of mRNA_M-pyrifera_M_contig95015.21928.1 vs. uniprot
Match: A0A3D3R1K5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3R1K5_9PLAN)

HSP 1 Score: 306 bits (785), Expect = 1.530e-100
Identity = 176/278 (63.31%), Postives = 194/278 (69.78%), Query Frame = 1
Query:   37 MTLPKHFEELARISDHIAESSASDLIRYLELLVRSDDQKKAPPVLNRLRKQYPELAARITPFLAHYQPSEELARAQTVYQNTK--------AQEEDLQAAINVLFKYAEPTDIVKL--------------------------------AYRKGLPQRMNQRLVRAIAEKGGDESAYPFVEAYYLEFIQGQKADNDLTCVSAFEEIGDQRAIPYLREIVKKSERKE-------DAAHAIGNIIFDKRIKKKIDYHKLEKLDENIRTLFRDPAYITEKER 729
            MTLP+HFEELARISDH+AE SA     YLELLVRSDDQKKA P+LNRLRKQYPELAARITPFLA YQ +EELARAQ+VYQN+K        A  E+ Q A NVL KYA   DI K                                  Y+KGL   +NQRLV+ IAEKGGDESAYPFVE YYLEF+QG+KAD   TC+SAF EIGDQRAIPYLREIVK S++ +        AAHAIG IIFDKRIK+KID HKLEKLDENI T+FRDP YITEKER
Sbjct:    1 MTLPEHFEELARISDHVAEYSARSFTGYLELLVRSDDQKKAQPLLNRLRKQYPELAARITPFLAQYQTAEELARAQSVYQNSKVLVYXXXKALYEEPQTAKNVLSKYANGADITKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYKKGLGHGVNQRLVKVIAEKGGDESAYPFVEGYYLEFVQGRKADFHSTCISAFIEIGDQRAIPYLREIVKNSDQNKGAGYAFNSAAHAIGQIIFDKRIKRKIDNHKLEKLDENIHTIFRDPTYITEKER 278          
BLAST of mRNA_M-pyrifera_M_contig95015.21928.1 vs. uniprot
Match: A0A2G2JCC9_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2JCC9_9BACT)

HSP 1 Score: 194 bits (494), Expect = 3.090e-53
Identity = 113/219 (51.60%), Postives = 148/219 (67.58%), Query Frame = 1
Query:    1 LSIQEAMEALSQMTLPKHFEELARISDHIAESSASDLIRYLELLVRSDDQKKAPPVLNRLRKQYPELAARITPFLAHYQP------SEELARAQTVYQNTKAQEEDLQAAINVLFKYAEPTDIVKLAYRKGLPQRMNQRLVRAIAEKGGDESAYPFVEAYYLEFIQGQKADNDLTCVSAFEEIGDQRAIPYLREIVKKSERKEDAAHAIGNIIFDKRIK 639
            L IQ AM ALS MTLP+HFEELA ISD +AE S S +  Y+ +L +S+  K A P+L+ LR +YP+ A+ IT FL    P      S++L  A+  YQN++  + +L  AI VL K+AEPTDI +L YR  LP+ MN+RLV  I  KGGD+S +PF+EAYYLE IQ +K     TCV  F   GD+RAIPYLREI+  +ERK +AA+AIG+I++   IK
Sbjct:  756 LFIQGAMAALSHMTLPEHFEELASISDQVAEISVSGIRDYMTVLYQSNPTK-AVPLLSDLRSKYPKKASNITSFLNRQNPPQEKDTSKDLKLAKIAYQNSEDIKVELATAIKVLSKHAEPTDIAELKYRHKLPEWMNERLVSVIRFKGGDQSVFPFIEAYYLEMIQEKKTLRIWTCVEPFAMTGDKRAIPYLREIITNTERKTEAANAIGDILYPHPIK 973          
BLAST of mRNA_M-pyrifera_M_contig95015.21928.1 vs. uniprot
Match: A0A2E7D436_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D436_9PLAN)

HSP 1 Score: 193 bits (491), Expect = 5.440e-53
Identity = 117/243 (48.15%), Postives = 154/243 (63.37%), Query Frame = 1
Query:    1 LSIQEAMEALSQMTLPK-HFEELARISDHIAESSASDLIRYLELLVRSDDQKKAPPVLNRLRKQYPELAARITPFLAHYQPSEELARAQTVYQNTKAQEEDLQAAINVLFKYAEPTDIVKLAYRKGLPQRMNQRLVRAIAEKGGDESAYPFVEAYYLEFIQGQKADNDLTCVSAFEEIGDQRAIPYLREIVKKSERKEDAAHAIGNIIFDKRIKKKIDYHKLEKLDENIRTLFRDPAYITEKE 726
            L IQ A++AL+ M LP   FE+L  I+D  A   +S  I YL++++R+D Q  A P LNRLRKQ P++AA     LA  +   EL RA   YQ +     +L +AI+VL   A P DI KL YRKGLP  MN+ L   I  +GGDES +PFV+AYYLE I+G+ A N LTCV+AFE IGDQRAIPYLRE+   +ERK DAA A+G+++  K + +K     LE+   ++R +F D     EKE
Sbjct:  597 LLIQGAVDALNHMKLPAADFEKLVGIADQAAVDVSSTTINYLDVVIRTD-QTNAIPFLNRLRKQNPKIAASAMRALAKIRHKAELPRAIAAYQKSDDIRGELPSAISVLTDLATPKDIAKLEYRKGLPNWMNESLTSIIRRRGGDESQFPFVKAYYLEHIRGKGAHNHLTCVAAFERIGDQRAIPYLREVFSTTERKRDAAIALGSLLLPKTVSRKYTESPLER---HVRLVFDDKVSKAEKE 835          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig95015.21928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2E7K6G5_9PLAN2.800e-14995.90Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A2E2CCZ9_9PLAN2.920e-13890.16Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A3D3R1K5_9PLAN1.530e-10063.31Uncharacterized protein n=1 Tax=Gimesia maris TaxI... [more]
A0A2G2JCC9_9BACT3.090e-5351.60Uncharacterized protein n=1 Tax=Blastopirellula sp... [more]
A0A2E7D436_9PLAN5.440e-5348.15Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig95015contigM-pyrifera_M_contig95015:3..734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size732
Cds size714
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816864.613742-UTR-M-pyrifera_M_contig95015:2..201622816864.613742-UTR-M-pyrifera_M_contig95015:2..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95015 3..20 +
1692278223.5734646-UTR-M-pyrifera_M_contig95015:2..201692278223.5734646-UTR-M-pyrifera_M_contig95015:2..20Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig95015 3..20 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816864.6254246-CDS-M-pyrifera_M_contig95015:20..7341622816864.6254246-CDS-M-pyrifera_M_contig95015:20..734Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95015 21..734 +
1692278223.5881667-CDS-M-pyrifera_M_contig95015:20..7341692278223.5881667-CDS-M-pyrifera_M_contig95015:20..734Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig95015 21..734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig95015.21928.1prot_M-pyrifera_M_contig95015.21928.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig95015 21..734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig95015.21928.1

>prot_M-pyrifera_M_contig95015.21928.1 ID=prot_M-pyrifera_M_contig95015.21928.1|Name=mRNA_M-pyrifera_M_contig95015.21928.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=238bp
MEALSQMTLPKHFEELARISDHIAESSASDLIRYLELLVRSDDQKKAPPV
LNRLRKQYPELAARITPFLAHYQPSEELARAQTVYQNTKAQEEDLQAAIN
VLFKYAEPTDIVKLAYRKGLPQRMNQRLVRAIAEKGGDESAYPFVEAYYL
EFIQGQKADNDLTCVSAFEEIGDQRAIPYLREIVKKSERKEDAAHAIGNI
IFDKRIKKKIDYHKLEKLDENIRTLFRDPAYITEKERT
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mRNA from alignment at M-pyrifera_M_contig95015:3..734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig95015.21928.1 ID=mRNA_M-pyrifera_M_contig95015.21928.1|Name=mRNA_M-pyrifera_M_contig95015.21928.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig95015:3..734+ (Macrocystis pyrifera P11B4 male)
TTATCGATCCAGGAAGCCATGGAAGCTTTATCTCAGATGACTCTCCCTAA GCATTTTGAGGAACTCGCTCGCATTTCTGATCATATTGCAGAATCTTCAG CAAGTGATTTGATTCGGTATCTCGAGTTATTAGTTCGGTCAGATGATCAA AAAAAGGCACCACCGGTATTAAATCGCCTGCGCAAACAATATCCTGAACT GGCAGCACGTATTACCCCGTTTCTTGCTCATTATCAGCCGTCTGAGGAAC TCGCTCGTGCTCAAACTGTCTATCAGAATACCAAAGCTCAGGAAGAGGAT CTGCAAGCAGCCATTAATGTTTTATTCAAGTATGCTGAACCGACTGATAT AGTAAAACTTGCTTATAGAAAAGGATTACCCCAACGGATGAACCAACGGC TCGTCAGGGCCATTGCGGAAAAAGGGGGGGATGAATCCGCCTATCCATTT GTTGAAGCTTATTATCTGGAGTTTATCCAAGGACAGAAAGCAGACAATGA CTTGACCTGTGTTTCAGCTTTCGAAGAGATAGGAGATCAACGCGCCATTC CCTACTTGAGAGAGATTGTCAAGAAATCAGAACGAAAAGAAGATGCAGCA CACGCCATTGGTAATATTATCTTTGACAAGCGAATCAAAAAGAAAATTGA TTACCATAAGTTGGAAAAGTTGGATGAGAATATTCGCACACTCTTTCGAG ATCCCGCATACATAACTGAGAAGGAACGCACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig95015:3..734+

>mRNA_M-pyrifera_M_contig95015.21928.1 ID=mRNA_M-pyrifera_M_contig95015.21928.1|Name=mRNA_M-pyrifera_M_contig95015.21928.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1428bp|location=Sequence derived from alignment at M-pyrifera_M_contig95015:3..734+ (Macrocystis pyrifera P11B4 male)
ATGGAAGCTTTATCTCAGATGACTCTCCCTAAGCATTTTGAGGAACTCGC
TCGCATTTCTGATCATATTGCAGAATCTTCAGCAAGTGATTTGATTCGGT
ATCTCGAGTTATTAGTTCGGTCAGATGATCAAAAAAAGGCACCACCGGTA
TTAAATCGCCTGCGCAAACAATATCCTGAACTGGCAGCACGTATTACCCC
GTTTCTTGCTCATTATCAGCCGTCTGAGGAACTCGCTCGTGCTCAAACTG
TCTATCAGAATACCAAAGCTCAGGAAGAGGATCTGCAAGCAGCCATTAAT
GTTTTATTCAAGTATGCTGAACCGACTGATATAGTAAAACTTGCTTATAG
AAAAGGATTACCCCAACGGATGAACCAACGGCTCGTCAGGGCCATTGCGG
AAAAAGGGGGGGATGAATCCGCCTATCCATTTGTTGAAGCTTATTATCTG
GAGTTTATCCAAGGACAGAAAGCAGACAATGACTTGACCTGTGTTTCAGC
TTTCGAAGAGATAGGAGATCAACGCGCCATTCCCTACTTGAGAGAGATTG
TCAAGAAATCAGAACGAAAAGAAGATGCAGCACACGCCATTGGTAATATT
ATCTTTGACAAGCGAATCAAAAAGAAAATTGATTACCATAAGTTGGAAAA
GTTGGATGAGAATATTCGCACACTCTTTCGAGATCCCGCATACATAACTG
AGAAGGAACGCACTATGGAAGCTTTATCTCAGATGACTCTCCCTAAGCAT
TTTGAGGAACTCGCTCGCATTTCTGATCATATTGCAGAATCTTCAGCAAG
TGATTTGATTCGGTATCTCGAGTTATTAGTTCGGTCAGATGATCAAAAAA
AGGCACCACCGGTATTAAATCGCCTGCGCAAACAATATCCTGAACTGGCA
GCACGTATTACCCCGTTTCTTGCTCATTATCAGCCGTCTGAGGAACTCGC
TCGTGCTCAAACTGTCTATCAGAATACCAAAGCTCAGGAAGAGGATCTGC
AAGCAGCCATTAATGTTTTATTCAAGTATGCTGAACCGACTGATATAGTA
AAACTTGCTTATAGAAAAGGATTACCCCAACGGATGAACCAACGGCTCGT
CAGGGCCATTGCGGAAAAAGGGGGGGATGAATCCGCCTATCCATTTGTTG
AAGCTTATTATCTGGAGTTTATCCAAGGACAGAAAGCAGACAATGACTTG
ACCTGTGTTTCAGCTTTCGAAGAGATAGGAGATCAACGCGCCATTCCCTA
CTTGAGAGAGATTGTCAAGAAATCAGAACGAAAAGAAGATGCAGCACACG
CCATTGGTAATATTATCTTTGACAAGCGAATCAAAAAGAAAATTGATTAC
CATAAGTTGGAAAAGTTGGATGAGAATATTCGCACACTCTTTCGAGATCC
CGCATACATAACTGAGAAGGAACGCACT
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