mRNA_M-pyrifera_M_contig94988.21916.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94988.21916.1
Unique NamemRNA_M-pyrifera_M_contig94988.21916.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Match: U6GKK7_EIMAC (Zinc knuckle domain-containing protein, putative n=1 Tax=Eimeria acervulina TaxID=5801 RepID=U6GKK7_EIMAC)

HSP 1 Score: 62.4 bits (150), Expect = 1.170e-8
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   10 DKAKGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQLKLVN 144
            DKAK  L +ARLTG+ S    GAC KC QVGHL FQCRN ++LV+
Sbjct:   16 DKAKELLTLARLTGTLSTHTPGACTKCNQVGHLSFQCRNDIRLVD 60
[Close]
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Match: A0A0G4EMP4_VITBC (CCHC-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EMP4_VITBC)

HSP 1 Score: 62.4 bits (150), Expect = 1.700e-8
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   10 DKAKGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQLKL 138
            +KAKG  A+ARLTG+ S    GAC KCGQ+GHL FQCRN + L
Sbjct:   44 EKAKGLFALARLTGNSSSVTPGACRKCGQLGHLAFQCRNLVAL 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Match: A0A6P5WDE3_9EIME (CAX-interacting protein 4 n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A6P5WDE3_9EIME)

HSP 1 Score: 61.6 bits (148), Expect = 3.970e-8
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   10 DKAKGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQLKLVNGK 150
            DKAK  L +ARLTG+ S    GAC KC QVGHL FQCRN ++L   K
Sbjct:   52 DKAKELLTLARLTGTLSTHTPGACTKCNQVGHLAFQCRNDVRLAESK 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Match: A0A426ZUC3_ENSVE (CCHC-type domain-containing protein n=2 Tax=Musaceae TaxID=4637 RepID=A0A426ZUC3_ENSVE)

HSP 1 Score: 62.0 bits (149), Expect = 1.200e-7
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   19 KGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQL 132
            +G LA+AR+TGSGS+   GAC+KCG+VGHL FQCRN L
Sbjct:   59 QGLLALARITGSGSNEARGACKKCGRVGHLTFQCRNFL 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Match: A0A8J5BUU0_ZINOF (Uncharacterized protein n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5BUU0_ZINOF)

HSP 1 Score: 61.6 bits (148), Expect = 1.400e-7
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   19 KGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQL 132
            +G LA+AR+TGSGS+   GAC+KCG+VGHL FQCRN L
Sbjct:   68 QGLLALARVTGSGSNEARGACKKCGRVGHLTFQCRNFL 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Match: A0A4V4H528_MUSBA (CCHC-type domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4V4H528_MUSBA)

HSP 1 Score: 61.2 bits (147), Expect = 2.090e-7
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   19 KGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQLKLVNGKLV 156
            +G LA+AR+TGSGS+   G+C+KCG+VGHL FQCRN L   +  +V
Sbjct:   66 QGLLALARVTGSGSNEARGSCKKCGRVGHLTFQCRNFLSAKDSAVV 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Match: A0A328DK80_9ASTE (CCHC-type domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DK80_9ASTE)

HSP 1 Score: 60.1 bits (144), Expect = 4.930e-7
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 NPMDKAKGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQLKL 138
            NP +  +G L +AR++GS +D   GAC KCG+VGHL FQCRN L +
Sbjct:   56 NPYNNFRGLLDLARMSGSSADVARGACNKCGRVGHLTFQCRNFLSV 101
[Close]
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Match: A0A813EE02_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EE02_POLGL)

HSP 1 Score: 58.5 bits (140), Expect = 5.220e-7
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   16 AKGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQLKL 138
            AKG   +A+LTG+ S    GAC+KCGQVGHL FQCRN + L
Sbjct:   52 AKGLFRLAQLTGNSSTLAPGACKKCGQVGHLYFQCRNNISL 92
[Close]
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Match: A0A7S3SQ53_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SQ53_9SPIT)

HSP 1 Score: 57.4 bits (137), Expect = 1.060e-6
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   16 AKGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQLKL 138
            AKG   +A+LTG+ S    GAC++CGQVGHL FQCRN +K+
Sbjct:   19 AKGLFRLAQLTGNSSTLAPGACKRCGQVGHLFFQCRNTMKV 59
[Close]
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Match: B6AE83_CRYMR (Zinc knuckle family protein n=1 Tax=Cryptosporidium muris (strain RN66) TaxID=441375 RepID=B6AE83_CRYMR)

HSP 1 Score: 57.0 bits (136), Expect = 1.210e-6
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   19 KGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQLKL 138
            KG   IA+LTGS  D++ GAC  CGQ+GHL +QCRN   L
Sbjct:   55 KGMNTIAKLTGSSFDTIPGACNNCGQIGHLSYQCRNNYTL 94
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94988.21916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U6GKK7_EIMAC1.170e-862.22Zinc knuckle domain-containing protein, putative n... [more]
A0A0G4EMP4_VITBC1.700e-862.79CCHC-type domain-containing protein n=1 Tax=Vitrel... [more]
A0A6P5WDE3_9EIME3.970e-859.57CAX-interacting protein 4 n=1 Tax=Cyclospora cayet... [more]
A0A426ZUC3_ENSVE1.200e-768.42CCHC-type domain-containing protein n=2 Tax=Musace... [more]
A0A8J5BUU0_ZINOF1.400e-768.42Uncharacterized protein n=3 Tax=Zingiber officinal... [more]
A0A4V4H528_MUSBA2.090e-756.52CCHC-type domain-containing protein n=2 Tax=Musa T... [more]
A0A328DK80_9ASTE4.930e-754.35CCHC-type domain-containing protein n=3 Tax=Cuscut... [more]
A0A813EE02_POLGL5.220e-760.98Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S3SQ53_9SPIT1.060e-658.54Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
B6AE83_CRYMR1.210e-657.50Zinc knuckle family protein n=1 Tax=Cryptosporidiu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94988contigM-pyrifera_M_contig94988:2..703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue8.5e-08
Seed eggNOG ortholog4641.GSMUA_Achr8P02570_001
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.zinc finger
EggNOG OGs37S78@33090,3GFGW@35493,3KM0F@4447,KOG2985@1,KOG2985@2759
COG Functional cat.S
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Exons1
Model size702
Cds size696
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816864.0161836-UTR-M-pyrifera_M_contig94988:1..71622816864.0161836-UTR-M-pyrifera_M_contig94988:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94988 2..7 +
1692278223.2177594-UTR-M-pyrifera_M_contig94988:1..71692278223.2177594-UTR-M-pyrifera_M_contig94988:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94988 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816864.0290062-CDS-M-pyrifera_M_contig94988:7..7031622816864.0290062-CDS-M-pyrifera_M_contig94988:7..703Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94988 8..703 +
1692278223.2292593-CDS-M-pyrifera_M_contig94988:7..7031692278223.2292593-CDS-M-pyrifera_M_contig94988:7..703Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94988 8..703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94988.21916.1prot_M-pyrifera_M_contig94988.21916.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94988 8..703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94988.21916.1

>prot_M-pyrifera_M_contig94988.21916.1 ID=prot_M-pyrifera_M_contig94988.21916.1|Name=mRNA_M-pyrifera_M_contig94988.21916.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=232bp
MDKAKGFLAIARLTGSGSDSVSGACEKCGQVGHLKFQCRNQLKLVNGKLV
VPGKARPAATKAATKAASESESESESESESESESSEKRRRRRRKRKRRHR
EERHRSSRDSHRHRRSHRRRRHRSSKDRSRSRSRSRSLRKDRRSRSPRKE
RSRSRSQTKHSRRRHSRDPTRRRSVSRDSRRGREEGDRRIERRKHQSRER
SKDRRGREERKERSRSHGKRSDKRRSHSRDVS
back to top

mRNA from alignment at M-pyrifera_M_contig94988:2..703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94988.21916.1 ID=mRNA_M-pyrifera_M_contig94988.21916.1|Name=mRNA_M-pyrifera_M_contig94988.21916.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig94988:2..703+ (Macrocystis pyrifera P11B4 male)
AATCCCATGGACAAGGCAAAGGGCTTCTTGGCAATCGCACGCCTGACGGG
CTCCGGCTCAGATTCTGTGTCTGGCGCCTGTGAGAAGTGTGGCCAAGTGG
GCCACCTGAAGTTCCAGTGCCGCAACCAACTGAAGCTCGTCAATGGCAAG
CTGGTCGTGCCCGGCAAGGCTAGGCCAGCAGCGACAAAGGCAGCGACAAA
AGCAGCGAGCGAGAGTGAGAGCGAGAGTGAGAGCGAGAGTGAAAGCGAGA
GTGAGAGTTCTGAGAAGAGGAGGAGACGGCGCAGAAAGAGGAAGAGGAGA
CACCGAGAGGAGCGGCACAGGTCGTCACGTGACAGCCACAGACATCGAAG
GAGCCATCGACGCAGGCGCCACCGCTCCAGCAAGGACAGGAGCAGGAGCA
GGAGCAGGAGCAGAAGCCTGCGGAAGGACAGACGAAGCAGGAGTCCGCGT
AAGGAGAGGAGCAGGAGTAGGAGCCAAACGAAGCACAGCAGACGCCGCCA
TAGCAGGGACCCCACCAGGAGGCGGAGCGTTAGCCGCGACAGCAGGAGAG
GTAGAGAAGAGGGAGACAGAAGGATTGAGAGACGTAAACACCAGAGCAGA
GAGCGCAGCAAAGACAGACGTGGGCGAGAGGAACGCAAGGAACGATCAAG
GAGCCACGGGAAAAGGAGCGACAAGCGAAGGAGCCACAGCCGCGACGTCA
GC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig94988:2..703+

>mRNA_M-pyrifera_M_contig94988.21916.1 ID=mRNA_M-pyrifera_M_contig94988.21916.1|Name=mRNA_M-pyrifera_M_contig94988.21916.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1392bp|location=Sequence derived from alignment at M-pyrifera_M_contig94988:2..703+ (Macrocystis pyrifera P11B4 male)
ATGGACAAGGCAAAGGGCTTCTTGGCAATCGCACGCCTGACGGGCTCCGG
CTCAGATTCTGTGTCTGGCGCCTGTGAGAAGTGTGGCCAAGTGGGCCACC
TGAAGTTCCAGTGCCGCAACCAACTGAAGCTCGTCAATGGCAAGCTGGTC
GTGCCCGGCAAGGCTAGGCCAGCAGCGACAAAGGCAGCGACAAAAGCAGC
GAGCGAGAGTGAGAGCGAGAGTGAGAGCGAGAGTGAAAGCGAGAGTGAGA
GTTCTGAGAAGAGGAGGAGACGGCGCAGAAAGAGGAAGAGGAGACACCGA
GAGGAGCGGCACAGGTCGTCACGTGACAGCCACAGACATCGAAGGAGCCA
TCGACGCAGGCGCCACCGCTCCAGCAAGGACAGGAGCAGGAGCAGGAGCA
GGAGCAGAAGCCTGCGGAAGGACAGACGAAGCAGGAGTCCGCGTAAGGAG
AGGAGCAGGAGTAGGAGCCAAACGAAGCACAGCAGACGCCGCCATAGCAG
GGACCCCACCAGGAGGCGGAGCGTTAGCCGCGACAGCAGGAGAGGTAGAG
AAGAGGGAGACAGAAGGATTGAGAGACGTAAACACCAGAGCAGAGAGCGC
AGCAAAGACAGACGTGGGCGAGAGGAACGCAAGGAACGATCAAGGAGCCA
CGGGAAAAGGAGCGACAAGCGAAGGAGCCACAGCCGCGACGTCAGCATGG
ACAAGGCAAAGGGCTTCTTGGCAATCGCACGCCTGACGGGCTCCGGCTCA
GATTCTGTGTCTGGCGCCTGTGAGAAGTGTGGCCAAGTGGGCCACCTGAA
GTTCCAGTGCCGCAACCAACTGAAGCTCGTCAATGGCAAGCTGGTCGTGC
CCGGCAAGGCTAGGCCAGCAGCGACAAAGGCAGCGACAAAAGCAGCGAGC
GAGAGTGAGAGCGAGAGTGAGAGCGAGAGTGAAAGCGAGAGTGAGAGTTC
TGAGAAGAGGAGGAGACGGCGCAGAAAGAGGAAGAGGAGACACCGAGAGG
AGCGGCACAGGTCGTCACGTGACAGCCACAGACATCGAAGGAGCCATCGA
CGCAGGCGCCACCGCTCCAGCAAGGACAGGAGCAGGAGCAGGAGCAGGAG
CAGAAGCCTGCGGAAGGACAGACGAAGCAGGAGTCCGCGTAAGGAGAGGA
GCAGGAGTAGGAGCCAAACGAAGCACAGCAGACGCCGCCATAGCAGGGAC
CCCACCAGGAGGCGGAGCGTTAGCCGCGACAGCAGGAGAGGTAGAGAAGA
GGGAGACAGAAGGATTGAGAGACGTAAACACCAGAGCAGAGAGCGCAGCA
AAGACAGACGTGGGCGAGAGGAACGCAAGGAACGATCAAGGAGCCACGGG
AAAAGGAGCGACAAGCGAAGGAGCCACAGCCGCGACGTCAGC
back to top