mRNA_M-pyrifera_M_contig9482.21874.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9482.21874.1
Unique NamemRNA_M-pyrifera_M_contig9482.21874.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9482.21874.1 vs. uniprot
Match: D8LQP9_ECTSI (DUF1115 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP9_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.960e-55
Identity = 138/281 (49.11%), Postives = 169/281 (60.14%), Query Frame = 1 
Query:    7 GEKSAMLSLQEVLTMQLDEMELLETAYPEITFDTPDPRPNMRAALA---EAASLGQQGREDSCLEDALATVPLLSFRCPLS-REAHLRVRLPRRYPEDKLEATVEGTPRLSALSRREIAAAATAAAVGDGEASGLSGERRSEPQCLQVLGEAMRKSDDLAEKESAGRVPSSSLAGVSTIGDGRGAAGAHYGGESGEARRKEGSNVSSTRDQXXXXXXXXXXQPPRDLGAGPAI---KGEEEVGAV-LGRRLIYSHHIIAQQKRTGIVKAARELGLGGFSKV 825
            GE+ A +SL E LTMQLDEMELLETAYPE+TFDTPD RP +RAAL    E      Q  E+  L++ALA  PLLSFRC L  +EA LRVRLP  YP+  L   VEGTP+L+  +R+ I+ A T       EA+ LS + R EPQCL+VLG AM+ S DLA++ES G   +S   G   I      +G   GG +  A        SS  ++              ++GA   +    GE +   V LGRRLIYSHHIIA QKRTGI+KAAR+L LGGFSKV
Sbjct:    2 GEEEAKMSLHEALTMQLDEMELLETAYPELTFDTPDARPLLRAALDGSFERQHTSDQKAEEIRLQEALADTPLLSFRCTLPLKEAQLRVRLPHEYPDAPLLVKVEGTPQLTVSARKAISDAVT------DEATRLSRDNRREPQCLEVLGAAMQTSVDLADRESTGG-QASQAGGCHEI------SGCGGGGMTTSAAPCLPHTCSSEGEERGISHHS------NNVGATKRVVSNSGEPDGEPVFLGRRLIYSHHIIATQKRTGIMKAARDLRLGGFSKV 263
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BLAST of mRNA_M-pyrifera_M_contig9482.21874.1 vs. uniprot
Match: A0A6H5KV49_9PHAE (DUF1115 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV49_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.880e-43
Identity = 120/259 (46.33%), Postives = 146/259 (56.37%), Query Frame = 1 
Query:   64 MELLETAYPEITFDTPDPRPNMRAALA---EAASLGQQGREDSCLEDALATVPLLSFRCPLS-REAHLRVRLPRRYPEDKLEATVEGTPRLSALSRREIAAAATAAAVGDGEASGLSGERRSEPQCLQVLGEAMRKSDDLAEKES-AGRVPSSSLAGVSTIGDGRGAAGAHYGGESGEARRKEGSNVSSTRDQXXXXXXXXXXQPPRDLGAGPAIKGEEEVGAVLGRRLIYSHHIIAQQKRTGIVKAARELGLGGFSKV 825
            MELLETAYPE+TFDTPD RP +RAAL    E      Q  E++ L++ALA  PLLSFRC L  +EA LRVRLP  YP+  L  T+EGTP+L+  +R+ I  A T       +A+ LS +RR EPQCL+VLG AM+ S DLA +ES AG               G G   +     +        S+    RD           +      A P  +GE      LGRRLIYSHHIIA QKR GI+KAAR+L LGGFSKV
Sbjct:    1 MELLETAYPELTFDTPDARPLLRAALDGSFERQHTSDQKAEETRLKEALADTPLLSFRCTLPLKEAQLRVRLPHDYPDTLLLVTIEGTPQLTVSARKAITDAVT------DKATRLSRDRRREPQCLEVLGAAMQTSADLAGRESTAGXXXXXXXXXXXXXCGGGGMTSS-----TAPCLPYTCSSEGEERDVSHLTNSVGATKSVISKSAQP--EGEP---VFLGRRLIYSHHIIATQKRAGIIKAARDLRLGGFSKV 243
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BLAST of mRNA_M-pyrifera_M_contig9482.21874.1 vs. uniprot
Match: A0A1V9ZWL6_9STRA (YSHH motif n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWL6_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.960e-5
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  709 VGAVLGRRLIYSHHIIAQQKRTGIVKAARELGLGGFSKV 825
            V  VLGRR IY HHIIA  KR  ++  A+ELGLGGFSK+
Sbjct:   39 VNPVLGRRAIYFHHIIATSKRRVVLDWAKELGLGGFSKI 77
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9482.21874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQP9_ECTSI1.960e-5549.11DUF1115 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KV49_9PHAE1.880e-4346.33DUF1115 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A1V9ZWL6_9STRA7.960e-564.10YSHH motif n=1 Tax=Thraustotheca clavata TaxID=745... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9482contigM-pyrifera_M_contig9482:114..3481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue4.5e-48
Seed eggNOG ortholog2880.D8LQP9
Preferred nameRWDD2B
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1115)
EggNOG OGs28IR6@1,2QR2G@2759
Ec32 ortholog descriptionUncharacterised conserved protein UCP038021, RWD
Ec32 orthologEc-24_001830.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size825
Cds size825
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9482.21874.1prot_M-pyrifera_M_contig9482.21874.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9482 114..3481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.9261508-CDS-M-pyrifera_M_contig9482:113..7611622816861.9261508-CDS-M-pyrifera_M_contig9482:113..761Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9482 114..761 -
1692278222.0468817-CDS-M-pyrifera_M_contig9482:113..7611692278222.0468817-CDS-M-pyrifera_M_contig9482:113..761Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9482 114..761 -
1622816861.9377534-CDS-M-pyrifera_M_contig9482:1683..17971622816861.9377534-CDS-M-pyrifera_M_contig9482:1683..1797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9482 1684..1797 -
1692278222.067781-CDS-M-pyrifera_M_contig9482:1683..17971692278222.067781-CDS-M-pyrifera_M_contig9482:1683..1797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9482 1684..1797 -
1622816861.9500628-CDS-M-pyrifera_M_contig9482:3418..34811622816861.9500628-CDS-M-pyrifera_M_contig9482:3418..3481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9482 3419..3481 -
1692278222.0780466-CDS-M-pyrifera_M_contig9482:3418..34811692278222.0780466-CDS-M-pyrifera_M_contig9482:3418..3481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9482 3419..3481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9482.21874.1

>prot_M-pyrifera_M_contig9482.21874.1 ID=prot_M-pyrifera_M_contig9482.21874.1|Name=mRNA_M-pyrifera_M_contig9482.21874.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=275bp
MSGEKSAMLSLQEVLTMQLDEMELLETAYPEITFDTPDPRPNMRAALAEA
ASLGQQGREDSCLEDALATVPLLSFRCPLSREAHLRVRLPRRYPEDKLEA
TVEGTPRLSALSRREIAAAATAAAVGDGEASGLSGERRSEPQCLQVLGEA
MRKSDDLAEKESAGRVPSSSLAGVSTIGDGRGAAGAHYGGESGEARRKEG
SNVSSTRDQRQQQQQERREQPPRDLGAGPAIKGEEEVGAVLGRRLIYSHH
IIAQQKRTGIVKAARELGLGGFSKV
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mRNA from alignment at M-pyrifera_M_contig9482:114..3481-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9482.21874.1 ID=mRNA_M-pyrifera_M_contig9482.21874.1|Name=mRNA_M-pyrifera_M_contig9482.21874.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3368bp|location=Sequence derived from alignment at M-pyrifera_M_contig9482:114..3481- (Macrocystis pyrifera P11B4 male)
ATGAGTGGCGAAAAATCAGCGATGCTTTCTCTGCAGGAGGTACTCACGAT
GCAGTTGGATGAGGTGCAGTGTGCAGTACGAGCGACGTCGATCACATTGG
CGGTGCAACTACAGCAGTACTGGTGTACGTAGATCTTTCGTGCTGGCTGG
CATATGACACTTTGATACAAGTGCTGGTATAATAGAGAGAAATCAATTGG
TAATTGAGCCTGCTACAAGTTATATCGTCTCGACGACCCTGGTAGCTGGT
AGCATCCAGGGGAGTCACTGGCCAGTATGTAGTCAATCGCGAGGGAAATA
ATGGAAAACGCGCGAACGGTTCACGCAGCTTGCGATCGGTTGAACTCATA
GCTGACATGCTTTTTTAGTTTTTTATAAAAAAGCGTTCAAGCACACATGC
CTGGAACGTGTGCCTGCGGTTCCTGCTGGTAGCTTTTAACTCGGCATGTG
GTCTATTACTACAGCAGTATATAGATGTCTGGATCGGCCTTCGTACGGCA
TATTGCCTCCTGAACTCTAGCACGAGGCGGGTAGGCGGTTGCGTACAAGG
GGTGCACGAAGCCGAAGCAACCCAAAGGTTTGAAATTGCATCCTACTACC
ATACGATCATCCGTGATGCGTTGGAGGTGCGTCCAATAACGCAATAACGA
AACTACCTGGCCCTGCTGTGTACCAGGTATACCGGATCGGAGTGGCACGT
GCAAGAAAAAAAGCGGCTGTACACTAGGATGTTGACATTGACCCACCATT
AGCAGCAGAAAAGGACTACGTAATGTCCTGAGGGAAAGAGCCTCTACGTT
CCTGTGGTCTCTGCTTCACCAACTGTTGTTACCAAACTGTTACGGAAATA
GAAAGGAAGAAGGGGGGTACAAAAGGGGAGGGGGAGGTACATGCCCCTTC
TTCCCATGCCGCCTCCTGCCCCGTTACGTTTGTATGCCATATAGCCCCCC
CCCCCCCCCCCCCCGGGCCTCCCCCCCGCCGCGGCACAATAGCCAAACCC
CCGGACATCTAGACGGGCCGGAGCGCAGCGCCGCCCCCCGCCCCNNNNNN
NNNNAGGAGAGACGGGGGGGAGAAAAGGGGGGGGGGAGGGACCCCCCCCT
CCTTCCCCCCCCCCCCCCCCCCCCGTCACCTTTTTATCCCAAAAACCCCC
CCCCCCCCCCCCCCCGCTGGGTCCTCCCCAGGGCCTGACAATATATCGAA
CCTCACGAAATCTCGACGGGTTTCGAACACCATCCCCGTCCTGTTCCAAT
CTCGCTTCCATCTCACAGTAGCATCAGAAAATCCGCAGAGAACAACCCCC
CCGCGCCACAGCAGTAGACTCAACTATTTTAGTACTGCAGTCCCGATTTG
GAGACAAACTACTTGGAATTTGAGTGGTTTGTCACCCAAACGGGACATCA
GTCCTAACAAGGTTAACGTGTTCGTGGCGCACAAAGCGTACCAGATACCG
CACCAGAAATATGACGATGTTTGATGCGGTAGCCCGCTCTTTTTTCTCCA
GGAGACCCACAATGCGAGGCAACGCCGCGCTCGGGTCGTAGCCTTAAGCG
GGGCTAGGGTTGGGCTTAGGTTCAGCGTGTGGGTCATTCCGCGTTGTCTC
GTACGCAGGGTCCGTCAACCATAGCGTCCACTGACTGGTGCTGTGAACTA
CCCTCCCTCATGTCTGCTCGTTTTCGCGTGTCAGATGGAATTGCTCGAGA
CGGCGTACCCGGAAATCACCTTCGACACGCCGGACCCTCGCCCAAACATG
CGCGCAGCGCTGGCCGAGGCCGCATCTCTCGGCCAGCAAGGGCGGGAAGT
CGCTCGACAAGGCAAGACGCACCTCACTCCTCGTTGCACGAACAGCACGC
GCCGCTGCTGTGTTCGACTCGCGTTGGATGCTCAGATTTGTCAGTGTGAT
GCTTGTGGTGTCGGGGTATCATCAGTTTCGCGTTGACGAAGATGGTTGTG
GTGGTGCTTGTGGCAGTAGAGGTCGCCACTTATTCGACGAAACCCTTTAA
TTGGTCAACTGCTGACATTTCGAGATGTTTCATTGGCCAACATGCGCACA
CACAAATATTTGCACCTCCCACTTGGCGCGCTCATCCCACGCCGACCTGA
CCCCACACCGACCTGAACCCTCCAAACTGCACCTGGGTATGTAGTTAGCC
GCCGGCAGGGCCCACAAAGCACCCTGATCCCACGCCGACCAAAAACGCTC
ATCGACAGCAAATCGAGGGTCGGCGATAGCCAGCAAACAGTTTTATCGAT
TACGTGGTAGTCTCCCCTCGGTTGAGGTGGCGGTGGTGATTATGGGTATC
GGGGGCGACGCGGGTCCAACACGTCATCGATGTACTCGCGTGCGGGCCTC
GCTGTGCAGTAGCGACAATACACCAAAGGCGATGCGGAGAACACGTATTT
TACATGAGCGGGTTGACTCGCGCTGGTTGGGCAAGGTCACGAACGAGCCC
GCCCAACGAGCTCGAGAACGACCGAACCAAAATTGTAGAACGAATAAAAT
CATCATGGACTGAACGAAACGTCTTGACACAAAACCAACGAAAACGACAT
AACAACGGTCCAAATCCGAAATGTGCACCGAAGCTCAGACCGACCCCACC
AACTGCTGTACTCGTAGCTCAACATACAACAATAATAAATACGACATTTT
CTCCCCCCCAAAAACACAACAACGTGGCGCCGTTCTCACACGCATGACTG
CAGAAGGTATGCAGAGACAGGACAGCTGCCTAGAAGACGCGCTGGCCACC
GTCCCGCTGCTCTCCTTCCGCTGTCCCCTTTCGCGAGAAGCCCATCTCCG
AGTCCGCCTCCCGCGGCGCTACCCGGAAGACAAGCTTGAAGCCACCGTCG
AAGGAACGCCACGACTTTCGGCTCTTTCTCGCAGGGAAATCGCGGCTGCA
GCGACCGCGGCGGCGGTAGGTGATGGAGAGGCAAGTGGGCTGTCCGGGGA
GCGAAGGAGCGAGCCTCAGTGCCTCCAGGTCCTGGGTGAGGCCATGCGAA
AGTCGGACGATCTGGCCGAGAAAGAGTCGGCGGGCCGGGTGCCGTCATCA
TCGTTAGCTGGCGTGAGCACAATCGGCGATGGCAGAGGGGCCGCTGGAGC
ACATTATGGAGGCGAGTCAGGGGAGGCGCGAAGAAAGGAAGGGTCGAATG
TAAGCAGCACGCGCGATCAGCGGCAGCAACAGCAGCAAGAGCGGCGAGAG
CAGCCTCCGCGAGACCTAGGCGCGGGTCCTGCGATTAAGGGAGAGGAAGA
AGTAGGCGCTGTCCTCGGGCGGCGTCTGATCTATTCACACCATATCATTG
CGCAGCAGAAGAGGACCGGGATCGTGAAGGCGGCAAGAGAGTTGGGGCTG
GGCGGGTTCAGCAAAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9482:114..3481-

>mRNA_M-pyrifera_M_contig9482.21874.1 ID=mRNA_M-pyrifera_M_contig9482.21874.1|Name=mRNA_M-pyrifera_M_contig9482.21874.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1650bp|location=Sequence derived from alignment at M-pyrifera_M_contig9482:114..3481- (Macrocystis pyrifera P11B4 male)
ATGAGTGGCGAAAAATCAGCGATGCTTTCTCTGCAGGAGGTACTCACGAT
GCAGTTGGATGAGATGAGTGGCGAAAAATCAGCGATGCTTTCTCTGCAGG
AGGTACTCACGATGCAGTTGGATGAGATGGAATTGCTCGAGACGGCGTAC
CCGGAAATCACCTTCGACACGCCGGACCCTCGCCCAAACATGCGCGCAGC
GCTGGCCGAGGCCGCATCTCTCGGCCAGCAAGGGCGGGAAATGGAATTGC
TCGAGACGGCGTACCCGGAAATCACCTTCGACACGCCGGACCCTCGCCCA
AACATGCGCGCAGCGCTGGCCGAGGCCGCATCTCTCGGCCAGCAAGGGCG
GGAAGACAGCTGCCTAGAAGACGCGCTGGCCACCGTCCCGCTGCTCTCCT
TCCGCTGTCCCCTTTCGCGAGAAGCCCATCTCCGAGTCCGCCTCCCGCGG
CGCTACCCGGAAGACAAGCTTGAAGCCACCGTCGAAGGAACGCCACGACT
TTCGGCTCTTTCTCGCAGGGAAATCGCGGCTGCAGCGACCGCGGCGGCGG
TAGGTGATGGAGAGGCAAGTGGGCTGTCCGGGGAGCGAAGGAGCGAGCCT
CAGTGCCTCCAGGTCCTGGGTGAGGCCATGCGAAAGTCGGACGATCTGGC
CGAGAAAGAGTCGGCGGGCCGGGTGCCGTCATCATCGTTAGCTGGCGTGA
GCACAATCGGCGATGGCAGAGGGGCCGCTGGAGCACATTATGGAGGCGAG
TCAGGGGAGGCGCGAAGAAAGGAAGGGTCGAATGTAAGCAGCACGCGCGA
TCAGCGGCAGCAACAGCAGCAAGAGCGGCGAGAGCAGCCTCCGCGAGACC
TAGGCGCGGGTCCTGCGATTAAGGGAGAGGAAGAAGTAGGCGCTGTCCTC
GGGCGGCGTCTGATCTATTCACACCATATCATTGCGCAGCAGAAGAGGAC
CGGGATCGTGAAGGCGGCAAGAGAGTTGGGGCTGGGCGGGTTCAGCAAAG
TGGACAGCTGCCTAGAAGACGCGCTGGCCACCGTCCCGCTGCTCTCCTTC
CGCTGTCCCCTTTCGCGAGAAGCCCATCTCCGAGTCCGCCTCCCGCGGCG
CTACCCGGAAGACAAGCTTGAAGCCACCGTCGAAGGAACGCCACGACTTT
CGGCTCTTTCTCGCAGGGAAATCGCGGCTGCAGCGACCGCGGCGGCGGTA
GGTGATGGAGAGGCAAGTGGGCTGTCCGGGGAGCGAAGGAGCGAGCCTCA
GTGCCTCCAGGTCCTGGGTGAGGCCATGCGAAAGTCGGACGATCTGGCCG
AGAAAGAGTCGGCGGGCCGGGTGCCGTCATCATCGTTAGCTGGCGTGAGC
ACAATCGGCGATGGCAGAGGGGCCGCTGGAGCACATTATGGAGGCGAGTC
AGGGGAGGCGCGAAGAAAGGAAGGGTCGAATGTAAGCAGCACGCGCGATC
AGCGGCAGCAACAGCAGCAAGAGCGGCGAGAGCAGCCTCCGCGAGACCTA
GGCGCGGGTCCTGCGATTAAGGGAGAGGAAGAAGTAGGCGCTGTCCTCGG
GCGGCGTCTGATCTATTCACACCATATCATTGCGCAGCAGAAGAGGACCG
GGATCGTGAAGGCGGCAAGAGAGTTGGGGCTGGGCGGGTTCAGCAAAGTG
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