mRNA_M-pyrifera_M_contig94809.21872.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94809.21872.1
Unique NamemRNA_M-pyrifera_M_contig94809.21872.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94809.21872.1 vs. uniprot
Match: UPI000F8EA85E (cytotoxic translational repressor of toxin-antitoxin stability system n=1 Tax=Legionella septentrionalis TaxID=2498109 RepID=UPI000F8EA85E)

HSP 1 Score: 58.2 bits (139), Expect = 7.820e-10
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 MKWNIEFTGKAAKQINKLPKSVQSILRLLVQDLSYMGTCPGKGWIN 138
            M W I+ T KAAKQ+NKLPKSV++ L LL++D+   G   G GW N
Sbjct:    1 MNWTIKITSKAAKQVNKLPKSVKATLLLLLRDIERNGPATGSGWKN 46
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BLAST of mRNA_M-pyrifera_M_contig94809.21872.1 vs. uniprot
Match: A0A078KWD1_9GAMM (Uncharacterized protein n=8 Tax=Legionella TaxID=445 RepID=A0A078KWD1_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 4.740e-7
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    1 MKWNIEFTGKAAKQINKLPKSVQSILRLLVQDLSYMGTCPGKGWIN 138
            M W I+ T KAAKQ++KLPKS ++ L LL++D+   G     GW N
Sbjct:    7 MNWTIKITNKAAKQVDKLPKSAKTTLLLLLRDIERNGPSTSGGWKN 52
[Close]
BLAST of mRNA_M-pyrifera_M_contig94809.21872.1 vs. uniprot
Match: A0A849HZI5_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A849HZI5_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 3.510e-6
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:    1 MKWNIEFTGKAAKQINKLPKSVQSILRLLVQDLSYMG 111
            MKWN+EFT KAAKQ+  L K  Q+ LRLLV+D+   G
Sbjct:    1 MKWNVEFTKKAAKQVAVLSKRTQAALRLLVEDIQENG 37
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94809.21872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI000F8EA85E7.820e-1054.35cytotoxic translational repressor of toxin-antitox... [more]
A0A078KWD1_9GAMM4.740e-747.83Uncharacterized protein n=8 Tax=Legionella TaxID=4... [more]
A0A849HZI5_9GAMM3.510e-659.46Uncharacterized protein n=1 Tax=Legionellales bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94809contigM-pyrifera_M_contig94809:580..720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.823238-CDS-M-pyrifera_M_contig94809:579..7201622816861.823238-CDS-M-pyrifera_M_contig94809:579..720Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94809 580..720 +
1692278221.998638-CDS-M-pyrifera_M_contig94809:579..7201692278221.998638-CDS-M-pyrifera_M_contig94809:579..720Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94809 580..720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94809.21872.1prot_M-pyrifera_M_contig94809.21872.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94809 580..720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94809.21872.1

>prot_M-pyrifera_M_contig94809.21872.1 ID=prot_M-pyrifera_M_contig94809.21872.1|Name=mRNA_M-pyrifera_M_contig94809.21872.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
MKWNIEFTGKAAKQINKLPKSVQSILRLLVQDLSYMGTCPGKGWIN*
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mRNA from alignment at M-pyrifera_M_contig94809:580..720+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94809.21872.1 ID=mRNA_M-pyrifera_M_contig94809.21872.1|Name=mRNA_M-pyrifera_M_contig94809.21872.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig94809:580..720+ (Macrocystis pyrifera P11B4 male)
ATGAAGTGGAACATTGAATTTACAGGGAAGGCGGCTAAGCAAATTAATAA
ACTGCCTAAATCGGTGCAATCGATTTTGCGTTTATTAGTACAGGATTTGT
CTTACATGGGTACTTGTCCAGGGAAAGGCTGGATAAATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94809:580..720+

>mRNA_M-pyrifera_M_contig94809.21872.1 ID=mRNA_M-pyrifera_M_contig94809.21872.1|Name=mRNA_M-pyrifera_M_contig94809.21872.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig94809:580..720+ (Macrocystis pyrifera P11B4 male)
ATGAAGTGGAACATTGAATTTACAGGGAAGGCGGCTAAGCAAATTAATAA
ACTGCCTAAATCGGTGCAATCGATTTTGCGTTTATTAGTACAGGATTTGT
CTTACATGGGTACTTGTCCAGGGAAAGGCTGGATAAATTAAATGAAGTGG
AACATTGAATTTACAGGGAAGGCGGCTAAGCAAATTAATAAACTGCCTAA
ATCGGTGCAATCGATTTTGCGTTTATTAGTACAGGATTTGTCTTACATGG
GTACTTGTCCAGGGAAAGGCTGGATAAATTAA
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