mRNA_M-pyrifera_M_contig94805.21871.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94805.21871.1
Unique NamemRNA_M-pyrifera_M_contig94805.21871.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Match: A0A168K2F4_MUCCL (TMF_TATA_bd domain-containing protein n=2 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A168K2F4_MUCCL)

HSP 1 Score: 63.2 bits (152), Expect = 1.090e-11
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:   25 MKQEHQQLVLRHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSRIEELEQARK 201
            ++++HQQL  R+QT LEL+GE+ EQVEEL ADL DVK++Y+SQI +LV +I+ L   +K
Sbjct:   14 LEEQHQQLNDRYQTLLELLGEKAEQVEELKADLQDVKEMYKSQIIDLVQKIDHLNSIKK 72
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BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Match: A0A1X0RFL7_RHIZD (TMF_TATA_bd domain-containing protein (Fragment) n=1 Tax=Rhizopus microsporus var. microsporus TaxID=86635 RepID=A0A1X0RFL7_RHIZD)

HSP 1 Score: 64.3 bits (155), Expect = 1.060e-10
Identity = 32/55 (58.18%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   22 AMKQEHQQLVLRHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSRIEEL 186
            +++QEH QL  R+QT LEL+GER E+V+EL ADL+D+K++YR+QI ELV +I++L
Sbjct:  194 SLQQEHDQLNQRYQTLLELLGERTEEVQELKADLIDIKEMYRTQIVELVQKIDQL 248
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BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Match: A0A367JTU8_RHIAZ (TMF_TATA_bd domain-containing protein n=1 Tax=Rhizopus azygosporus TaxID=86630 RepID=A0A367JTU8_RHIAZ)

HSP 1 Score: 64.3 bits (155), Expect = 2.070e-10
Identity = 32/55 (58.18%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   22 AMKQEHQQLVLRHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSRIEEL 186
            +++QEH QL  R+QT LEL+GER E+V+EL ADL+D+K++YR+QI ELV +I++L
Sbjct:  757 SLQQEHDQLNQRYQTLLELLGERTEEVQELKADLIDIKEMYRTQIVELVQKIDQL 811
[Close]
BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Match: I1CV77_RHIO9 (TMF_TATA_bd domain-containing protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1CV77_RHIO9)

HSP 1 Score: 63.2 bits (152), Expect = 3.000e-10
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   25 MKQEHQQLVLRHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSRIEEL 186
            ++QEH QL  R+QT LEL+GER E+V+EL ADL DVK +YR+QI ELV +I++L
Sbjct:  201 LQQEHDQLNARYQTLLELLGERTEEVQELKADLADVKDMYRTQIVELVQKIDQL 254
[Close]
BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Match: A0A367KKD0_RHIST (TMF_TATA_bd domain-containing protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KKD0_RHIST)

HSP 1 Score: 62.8 bits (151), Expect = 7.230e-10
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   34 EHQQLVLRHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSRIEEL 186
            +HQQL  R+QT LEL+GER EQVEEL ADL DVK++Y+SQI +LV ++++L
Sbjct:  742 QHQQLDSRYQTLLELLGERTEQVEELKADLQDVKEMYKSQIIDLVQKLDQL 792
[Close]
BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Match: A0A1X2GLV6_9FUNG (TMF_TATA_bd domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GLV6_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 1.340e-9
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 KSLTEFEAMKQEHQQLVL----------RHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSRIEELEQA 195
            K   + ++++Q+H QL            R+Q ALEL+GER EQVEEL AD+ DVK+LYR Q++ELV +I++L +A
Sbjct:  109 KMTQDLDSLRQDHHQLKQTLTDQSDLDRRYQAALELLGERTEQVEELKADIADVKELYRDQVTELVQKIDQLSRA 183
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BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Match: UPI000D1591A7 (golgin candidate 5-like n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D1591A7)

HSP 1 Score: 62.0 bits (149), Expect = 1.340e-9
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 KSLTEFE----------AMKQEHQQLVLRHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSRIEELEQA 195
            KS T+FE           M+ E + L LRH +ALELMGER+E+VEEL ADL DVK +YR QI  LV +IE L  A
Sbjct:  498 KSTTQFEQLRAEANLLPGMRAELESLRLRHTSALELMGERDEEVEELRADLADVKHMYREQIDMLVGQIERLSSA 572
[Close]
BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Match: A0A7I4FNR6_PHYPA (TMF_TATA_bd domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4FNR6_PHYPA)

HSP 1 Score: 62.0 bits (149), Expect = 1.350e-9
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 KSLTEFE----------AMKQEHQQLVLRHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSRIEELEQA 195
            KS T+FE           M+ E + L LRH +ALELMGER+E+VEEL ADL DVK +YR QI  LV +IE L  A
Sbjct:  654 KSTTQFEQLRAEANLLPGMRAELESLRLRHTSALELMGERDEEVEELRADLADVKHMYREQIDMLVGQIERLSSA 728
[Close]
BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Match: A0A367K035_RHIST (TATA element modulatory factor 1 n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367K035_RHIST)

HSP 1 Score: 61.6 bits (148), Expect = 1.850e-9
Identity = 31/54 (57.41%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   25 MKQEHQQLVLRHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSRIEEL 186
            +++EH QL  R+QT LEL+GER E+V+EL ADL DVK++YR+Q+ ELV +I++L
Sbjct:  831 LQKEHDQLNQRYQTLLELLGERTEEVQELKADLADVKEMYRTQVVELVQKIDQL 884
[Close]
BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Match: D5A8G8_PICSI (TMF_TATA_bd domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A8G8_PICSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.380e-9
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   25 MKQEHQQLVLRHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSRIEEL 186
            +K E + L  RH +ALELMGER+E++EEL AD+ DVKQ+YR Q+  LVS+IE+L
Sbjct:   98 LKAELEALRRRHTSALELMGERDEELEELRADIADVKQMYREQVDMLVSQIEKL 151
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94805.21871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A168K2F4_MUCCL1.090e-1155.93TMF_TATA_bd domain-containing protein n=2 Tax=Muco... [more]
A0A1X0RFL7_RHIZD1.060e-1058.18TMF_TATA_bd domain-containing protein (Fragment) n... [more]
A0A367JTU8_RHIAZ2.070e-1058.18TMF_TATA_bd domain-containing protein n=1 Tax=Rhiz... [more]
I1CV77_RHIO93.000e-1061.11TMF_TATA_bd domain-containing protein n=1 Tax=Rhiz... [more]
A0A367KKD0_RHIST7.230e-1062.75TMF_TATA_bd domain-containing protein n=1 Tax=Rhiz... [more]
A0A1X2GLV6_9FUNG1.340e-946.67TMF_TATA_bd domain-containing protein n=1 Tax=Hess... [more]
UPI000D1591A71.340e-953.33golgin candidate 5-like n=1 Tax=Physcomitrium pate... [more]
A0A7I4FNR6_PHYPA1.350e-953.33TMF_TATA_bd domain-containing protein n=1 Tax=Phys... [more]
A0A367K035_RHIST1.850e-957.41TATA element modulatory factor 1 n=1 Tax=Rhizopus ... [more]
D5A8G8_PICSI2.380e-959.26TMF_TATA_bd domain-containing protein n=1 Tax=Pice... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94805contigM-pyrifera_M_contig94805:534..737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.5
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog936053.I1CV77
KEGG koko:K20286
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.TATA element modulatory factor 1 TATA binding
EggNOG OGs1GUW5@112252,38G0Z@33154,3NWEB@4751,KOG4673@1,KOG4673@2759
COG Functional cat.K
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size204
Cds size180
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.7678523-CDS-M-pyrifera_M_contig94805:533..7131622816861.7678523-CDS-M-pyrifera_M_contig94805:533..713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94805 534..713 -
1692278221.973157-CDS-M-pyrifera_M_contig94805:533..7131692278221.973157-CDS-M-pyrifera_M_contig94805:533..713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94805 534..713 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.7823467-UTR-M-pyrifera_M_contig94805:713..7371622816861.7823467-UTR-M-pyrifera_M_contig94805:713..737Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94805 714..737 -
1692278221.987502-UTR-M-pyrifera_M_contig94805:713..7371692278221.987502-UTR-M-pyrifera_M_contig94805:713..737Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94805 714..737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94805.21871.1prot_M-pyrifera_M_contig94805.21871.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94805 534..713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94805.21871.1

>prot_M-pyrifera_M_contig94805.21871.1 ID=prot_M-pyrifera_M_contig94805.21871.1|Name=mRNA_M-pyrifera_M_contig94805.21871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MKQEHQQLVLRHQTALELMGEREEQVEELNADLMDVKQLYRSQISELVSR
IEELEQARK*
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mRNA from alignment at M-pyrifera_M_contig94805:534..737-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94805.21871.1 ID=mRNA_M-pyrifera_M_contig94805.21871.1|Name=mRNA_M-pyrifera_M_contig94805.21871.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig94805:534..737- (Macrocystis pyrifera P11B4 male)
AAGTCTTTGACAGAGTTCGAGGCGATGAAGCAGGAGCACCAACAGCTGGT
GCTCCGCCACCAGACTGCCCTCGAGCTGATGGGCGAGCGTGAGGAGCAGG
TGGAAGAGCTCAACGCCGACCTCATGGACGTCAAGCAACTCTACCGCAGC
CAGATCTCTGAGCTCGTTAGCCGCATCGAAGAGCTCGAGCAGGCTCGCAA
GTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94805:534..737-

>mRNA_M-pyrifera_M_contig94805.21871.1 ID=mRNA_M-pyrifera_M_contig94805.21871.1|Name=mRNA_M-pyrifera_M_contig94805.21871.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig94805:534..737- (Macrocystis pyrifera P11B4 male)
ATGAAGCAGGAGCACCAACAGCTGGTGCTCCGCCACCAGACTGCCCTCGA
GCTGATGGGCGAGCGTGAGGAGCAGGTGGAAGAGCTCAACGCCGACCTCA
TGGACGTCAAGCAACTCTACCGCAGCCAGATCTCTGAGCTCGTTAGCCGC
ATCGAAGAGCTCGAGCAGGCTCGCAAGTGAATGAAGCAGGAGCACCAACA
GCTGGTGCTCCGCCACCAGACTGCCCTCGAGCTGATGGGCGAGCGTGAGG
AGCAGGTGGAAGAGCTCAACGCCGACCTCATGGACGTCAAGCAACTCTAC
CGCAGCCAGATCTCTGAGCTCGTTAGCCGCATCGAAGAGCTCGAGCAGGC
TCGCAAGTGA
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