mRNA_M-pyrifera_M_contig94736.21860.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94736.21860.1
Unique NamemRNA_M-pyrifera_M_contig94736.21860.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Match: A0A812XNK2_SYMMI (LC1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XNK2_SYMMI)

HSP 1 Score: 173 bits (438), Expect = 4.570e-52
Identity = 85/138 (61.59%), Postives = 109/138 (78.99%), Query Frame = 1
Query:   55 RLSLSTNMIDKLGAFSGMNKLRILSLGRNAIKKLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEIEKLSALPNLREVLFKGNPIYEGLDDATARLYVIKHLPNVQKVDSELVTDSQRAEAA 468
            RL+LSTN ID++   +GM+ L+ILSLGRN IKK+EKLDD+A TLEELWVSYNQI+SLDGV  LTNL VLY SNN IK+W E++KL+ LPNLR+VLF GNPIY+ +    AR+ V+K +P V K+D ++V  ++R  AA
Sbjct:   50 RLALSTNAIDRIIPLAGMSSLKILSLGRNQIKKIEKLDDVASTLEELWVSYNQINSLDGVNVLTNLAVLYISNNLIKNWAELDKLAGLPNLRDVLFVGNPIYDDMSREQARIEVLKRIPQVAKIDGDMVKPAERELAA 187          
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Match: A0A7S3K2Z4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2Z4_9STRA)

HSP 1 Score: 170 bits (431), Expect = 5.770e-51
Identity = 85/138 (61.59%), Postives = 106/138 (76.81%), Query Frame = 1
Query:   58 LSLSTNMIDKLG-AFSGMNKLRILSLGRNAIKKLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEIEKLSALPNLREVLFKGNPIYEGLDDATARLYVIKHLPNVQKVDSELVTDSQRAEAA 468
            L LSTN IDK+  A +G+  L+ILSLGRN IKK+E+LDDLA  LEELW+SYNQISSLDG+  LTNL  L+ SNN IK++ E+EKL+ LPNL++VLF GNP+YEGL    AR+ V+K LPN+ K+D  +V  S R EAA
Sbjct:   51 LQLSTNSIDKISIALTGLKNLKILSLGRNVIKKIERLDDLAENLEELWISYNQISSLDGLSSLTNLTTLFISNNAIKNFAELEKLACLPNLKDVLFYGNPMYEGLSAQEARIEVLKRLPNIAKIDGSMVLQSDRDEAA 188          
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Match: F0Y145_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y145_AURAN)

HSP 1 Score: 165 bits (417), Expect = 8.110e-49
Identity = 79/138 (57.25%), Postives = 107/138 (77.54%), Query Frame = 1
Query:   58 LSLSTNMIDKLG-AFSGMNKLRILSLGRNAIKKLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEIEKLSALPNLREVLFKGNPIYEGLDDATARLYVIKHLPNVQKVDSELVTDSQRAEAA 468
            L LSTN IDK+G AF+G+  L+ILSLGRN IKK+EKLDDL  +LEELW+SYNQIS+L+G+  +T L  LY SNN +K++ E+EK++ LPNL++VLF GNP+YEGL  A +R+ +++ LPN+ K+D  +V    R EAA
Sbjct:   54 LQLSTNNIDKIGLAFTGLKNLKILSLGRNVIKKIEKLDDLGDSLEELWISYNQISALEGLHAMTKLTTLYMSNNNLKNFAELEKIAGLPNLKDVLFVGNPMYEGLTAAESRIEILRRLPNLAKIDGSMVLQRDRDEAA 191          
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Match: D7FPX7_ECTSI (Dynein light chain flagellar outer dynein arm light chain LC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPX7_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.400e-48
Identity = 76/137 (55.47%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   55 RLSLSTNMIDKLGAFSGMNKLRILSLGRNAIKKLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEIEKLSALPNLREVLFKGNPIYEGLDDATARLYVIKHLPNVQKVDSELVTDSQRAEA 465
            +LSLSTN ID++   +GM KL+ILSLGRN IKK+EKLDD+A +LEELW+SYNQ+++LDG+  L+NL  LY SNN +K W E++KL+ L  L +VLF GNPIYEG+    AR+ V++H+P V K+D ++V  ++R  A
Sbjct:   49 QLSLSTNCIDRIIPLAGMKKLKILSLGRNCIKKIEKLDDVAESLEELWISYNQVTTLDGLSNLSNLTRLYMSNNSVKSWAELDKLTGLEELTDVLFMGNPIYEGMSKEDARIEVLRHIPQVSKIDGDMVKPTERDAA 185          
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Match: A0A7S2SA92_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SA92_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.190e-47
Identity = 76/137 (55.47%), Postives = 106/137 (77.37%), Query Frame = 1
Query:   58 LSLSTNMIDKLGAFSGMNKLRILSLGRNAIKKLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEIEKLSALPNLREVLFKGNPIYEGLDDATARLYVIKHLPNVQKVDSELVTDSQRAEAA 468
            L+LSTN ID++ A S  N LR+LSLGRN IKK+EKLD+LA +L+ELW+SYNQI +LDGV  L NL  LY SNN I +W E++KL++LP L+++L  GNPIYEGL++   R+ V++H+P + K+D +++  S+R EAA
Sbjct:   61 LALSTNQIDRIEAISLPN-LRVLSLGRNMIKKIEKLDELAGSLQELWLSYNQIKTLDGVASLENLTTLYLSNNLISEWSELDKLTSLPQLKDILLLGNPIYEGLEEHDRRIQVLQHIPGLMKIDGDMIKPSEREEAA 196          
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Match: A0A835Z550_9STRA (Dynein light chain flagellar outer dynein arm light chain LC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z550_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.060e-45
Identity = 78/139 (56.12%), Postives = 105/139 (75.54%), Query Frame = 1
Query:   58 LSLSTNMIDKLGAFSGMNKLRILSLGRNAIKKLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEIEKLSALPNLREVLFKGNPIYEGLDDATARLYVIKHLPNVQKVDSELVTDSQRAEAADL 474
            LSLSTN ID+L   +GM +LRILSLGRN +K++EKL+D+A TLEELW+SYNQI+SL+G+  L +L  LY SNN IK W E+++L AL +LR+V F GNPIY  +    AR+ V++H+P V K+D ++V  S+R EAA L
Sbjct:   50 LSLSTNSIDRLIPLAGMKRLRILSLGRNVLKRIEKLEDVADTLEELWLSYNQITSLEGLGALASLTTLYVSNNNIKSWAELDRLQALTHLRDVTFVGNPIYGEMSREDARVEVLRHVPQVAKIDGDMVRPSER-EAAGL 187          
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Match: B8C6D5_THAPS (Leucine-rich repeat protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C6D5_THAPS)

HSP 1 Score: 152 bits (383), Expect = 1.110e-43
Identity = 73/135 (54.07%), Postives = 106/135 (78.52%), Query Frame = 1
Query:   52 RRLSLSTNMIDKLGAFSGMNKLRILSLGRNAIKKLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEIEKLSALPNLREVLFKGNPIY-EGLDDATARLYVIKHLPNVQKVDSELVTDSQ 453
            ++LSLSTNMI+++ + +GM++L+ILS+GRN IKK+EKL+D+A +L++LW+SYNQISSLDG+  +T L  LYCSNN IK + E++KL A   LR+VLF GNP+Y E      AR+ +++HLPN++K+D E V  S+
Sbjct:   51 QKLSLSTNMIERMISLTGMSELKILSIGRNNIKKIEKLEDVASSLQQLWISYNQISSLDGLACVTGLTTLYCSNNLIKSFSELDKLKANEQLRDVLFIGNPMYSEVATKEEARIEILRHLPNLKKIDGEFVKPSE 185          
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Match: K3WAN9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAN9_GLOUD)

HSP 1 Score: 147 bits (371), Expect = 7.920e-43
Identity = 70/120 (58.33%), Postives = 90/120 (75.00%), Query Frame = 1
Query:  106 MNKLRILSLGRNAIKKLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEIEKLSALPNLREVLFKGNPIYEGLDDATARLYVIKHLPNVQKVDSELVTDSQRAEA 465
            M KLRILSLGRN IKK+EKLDD++ TLEELW+SYN +++LDG+  LTNL  LY SNN IK W E++KL+ LP LR+VLF GNPIYE +     RL V+K +P V K+D ++V  ++R  A
Sbjct:    1 MKKLRILSLGRNQIKKIEKLDDVSDTLEELWISYNVVATLDGLSGLTNLTTLYVSNNLIKSWDELDKLANLPKLRDVLFVGNPIYENMSKEEQRLNVLKRIPKVAKIDGDMVKQTERDAA 120          
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Match: A0A7S1AAG3_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AAG3_NOCSC)

HSP 1 Score: 147 bits (371), Expect = 7.010e-42
Identity = 71/137 (51.82%), Postives = 94/137 (68.61%), Query Frame = 1
Query:   52 RRLSLSTNMIDKLGAFSGMNKLRILSLGRNAIKKLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEIEKLSALPNLREVLFKGNPIYEGLDDATARLYVIKHLPNVQKVDSELVTDSQRAE 462
            R LSLSTN IDK+ +   +  L ILSLGRN IKK+  L+++  TL ELW+SYN IS+LDG+ P   LQ L+ SNN+IKDW E+ KL  LP L  +L  GNPIYEGL    AR  V++ LP+++ VD E++T ++  E
Sbjct:   51 RHLSLSTNCIDKMISLPALKNLEILSLGRNVIKKIAGLEEVGATLRELWISYNSISTLDGLNPCLKLQTLFISNNKIKDWNELVKLQQLPELSNILLVGNPIYEGLTKRQARPRVVEQLPDIKSVDGEMITGTEAPE 187          
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Match: A0A812SAF9_9DINO (LC1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812SAF9_9DINO)

HSP 1 Score: 143 bits (361), Expect = 8.580e-41
Identity = 68/131 (51.91%), Postives = 93/131 (70.99%), Query Frame = 1
Query:   52 RRLSLSTNMIDKLGAFSGMNKLRILSLGRNAIKKLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEIEKLSALPNLREVLFKGNPIYEGLDDATARLYVIKHLPNVQKVDSELVT 444
            + L+LSTN IDK+ +   +  + +LSLGRN IKK+  L+++  TL+ELW+SYNQIS+LDG+ P   L  L+ SNN+IKDW E++KL A  +L  VLF GNPIYEGL    AR  V++HLP +  +D EL+T
Sbjct:   19 KHLALSTNCIDKMISLPALKNIEVLSLGRNLIKKISGLEEIGSTLKELWISYNQISALDGLAPCVKLTTLFISNNKIKDWPELDKLQANQDLTNVLFYGNPIYEGLTKKQARPKVLEHLPKIATLDGELLT 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94736.21860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812XNK2_SYMMI4.570e-5261.59LC1 protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A7S3K2Z4_9STRA5.770e-5161.59Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0Y145_AURAN8.110e-4957.25Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D7FPX7_ECTSI1.400e-4855.47Dynein light chain flagellar outer dynein arm ligh... [more]
A0A7S2SA92_9STRA6.190e-4755.47Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z550_9STRA2.060e-4556.12Dynein light chain flagellar outer dynein arm ligh... [more]
B8C6D5_THAPS1.110e-4354.07Leucine-rich repeat protein n=1 Tax=Thalassiosira ... [more]
K3WAN9_GLOUD7.920e-4358.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1AAG3_NOCSC7.010e-4251.82Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A812SAF9_9DINO8.580e-4151.91LC1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94736contigM-pyrifera_M_contig94736:44..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue1.4e-38
Seed eggNOG ortholog2880.D7FPX7
Preferred nameDNAL1
KEGG rclassRC00004,RC00014
KEGG koko:K01068,ko:K10411
KEGG ReactionR01274,R08174,R08175,R08176,R08177,R08178,R08179,R08180,R08181,R08182,R08183,R09450
KEGG Pathwayko00062,ko01040,ko01100,ko01110,ko05016,map00062,map01040,map01100,map01110,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036157,GO:0036158,GO:0042623,GO:0042995,GO:0043014,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045504,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
EC3.1.2.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko04812
Exons1
Model size483
Cds size483
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816861.24765-CDS-M-pyrifera_M_contig94736:43..5261622816861.24765-CDS-M-pyrifera_M_contig94736:43..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94736 44..526 -
1692278221.6709812-CDS-M-pyrifera_M_contig94736:43..5261692278221.6709812-CDS-M-pyrifera_M_contig94736:43..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94736 44..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94736.21860.1prot_M-pyrifera_M_contig94736.21860.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94736 44..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94736.21860.1

>prot_M-pyrifera_M_contig94736.21860.1 ID=prot_M-pyrifera_M_contig94736.21860.1|Name=mRNA_M-pyrifera_M_contig94736.21860.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
LPPSSLLPHPSSSSPLRRRLSLSTNMIDKLGAFSGMNKLRILSLGRNAIK
KLEKLDDLAPTLEELWVSYNQISSLDGVLPLTNLQVLYCSNNQIKDWGEI
EKLSALPNLREVLFKGNPIYEGLDDATARLYVIKHLPNVQKVDSELVTDS
QRAEAADLTL*
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mRNA from alignment at M-pyrifera_M_contig94736:44..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94736.21860.1 ID=mRNA_M-pyrifera_M_contig94736.21860.1|Name=mRNA_M-pyrifera_M_contig94736.21860.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig94736:44..526- (Macrocystis pyrifera P11B4 male)
CTCCCCCCTTCCTCCCTCCTCCCCCACCCCTCTTCCTCCTCTCCTCTGCG CAGACGCTTGTCTCTGAGCACGAACATGATCGACAAGTTGGGTGCGTTTT CTGGGATGAACAAGTTGCGGATTTTGTCGCTGGGCCGAAATGCGATCAAG AAGCTGGAGAAGCTTGACGACTTGGCGCCTACGCTGGAGGAGCTGTGGGT GAGCTACAACCAGATCAGCTCTCTGGACGGGGTGCTTCCGCTGACCAACC TGCAGGTGCTCTACTGCTCCAACAACCAGATCAAGGACTGGGGCGAAATC GAAAAGCTATCGGCGCTCCCAAACCTCAGGGAAGTCCTCTTCAAAGGGAA CCCCATCTACGAAGGCCTCGACGACGCCACCGCAAGACTCTACGTCATCA AACACCTCCCAAACGTACAGAAAGTCGACTCGGAATTAGTCACAGACTCG CAACGCGCAGAAGCAGCCGATCTCACCCTGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94736:44..526-

>mRNA_M-pyrifera_M_contig94736.21860.1 ID=mRNA_M-pyrifera_M_contig94736.21860.1|Name=mRNA_M-pyrifera_M_contig94736.21860.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig94736:44..526- (Macrocystis pyrifera P11B4 male)
CTCCCCCCTTCCTCCCTCCTCCCCCACCCCTCTTCCTCCTCTCCTCTGCG
CAGACGCTTGTCTCTGAGCACGAACATGATCGACAAGTTGGGTGCGTTTT
CTGGGATGAACAAGTTGCGGATTTTGTCGCTGGGCCGAAATGCGATCAAG
AAGCTGGAGAAGCTTGACGACTTGGCGCCTACGCTGGAGGAGCTGTGGGT
GAGCTACAACCAGATCAGCTCTCTGGACGGGGTGCTTCCGCTGACCAACC
TGCAGGTGCTCTACTGCTCCAACAACCAGATCAAGGACTGGGGCGAAATC
GAAAAGCTATCGGCGCTCCCAAACCTCAGGGAAGTCCTCTTCAAAGGGAA
CCCCATCTACGAAGGCCTCGACGACGCCACCGCAAGACTCTACGTCATCA
AACACCTCCCAAACGTACAGAAAGTCGACTCGGAATTAGTCACAGACTCG
CAACGCGCAGAAGCAGCCGATCTCACCCTGTAACTCCCCCCTTCCTCCCT
CCTCCCCCACCCCTCTTCCTCCTCTCCTCTGCGCAGACGCTTGTCTCTGA
GCACGAACATGATCGACAAGTTGGGTGCGTTTTCTGGGATGAACAAGTTG
CGGATTTTGTCGCTGGGCCGAAATGCGATCAAGAAGCTGGAGAAGCTTGA
CGACTTGGCGCCTACGCTGGAGGAGCTGTGGGTGAGCTACAACCAGATCA
GCTCTCTGGACGGGGTGCTTCCGCTGACCAACCTGCAGGTGCTCTACTGC
TCCAACAACCAGATCAAGGACTGGGGCGAAATCGAAAAGCTATCGGCGCT
CCCAAACCTCAGGGAAGTCCTCTTCAAAGGGAACCCCATCTACGAAGGCC
TCGACGACGCCACCGCAAGACTCTACGTCATCAAACACCTCCCAAACGTA
CAGAAAGTCGACTCGGAATTAGTCACAGACTCGCAACGCGCAGAAGCAGC
CGATCTCACCCTGTAA
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