mRNA_M-pyrifera_M_contig94710.21850.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94710.21850.1
Unique NamemRNA_M-pyrifera_M_contig94710.21850.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Match: A0A1V9YDV8_9STRA (DNA repair and recombination protein RAD54 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDV8_9STRA)

HSP 1 Score: 230 bits (587), Expect = 1.350e-66
Identity = 119/220 (54.09%), Postives = 147/220 (66.82%), Query Frame = 1 
Query:    1 RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDKQAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIVVDQKEQATALSSDDLRDLFSVPTATISDTHDKVACVRCGELEREAKHGSCGGDGDDVEGVDGGGGDGPLPEADVLRRQRLRGYRPQIGYPAEEDLKRWSHHFKWDSMRDRVLRQVCA-RGLVSFVF 657
            R+K VD FNDP  + F FLLSSKAGGCGLNL+GANRLVLFDPDWNPA DKQAAAR+WR+GQ K+CF+YRF+ TGT+EEKI+QRQLSKEGLQ+IV D KE+  +LSS DL+ LF     T SDTHD++ C RC                             P  + DV    + +  +PQIG PAEEDL  W+HH+ +D++ D ++R+  A   LVSFVF
Sbjct:  566 RKKLVDVFNDPKTNSFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFVATGTLEEKIFQRQLSKEGLQSIV-DDKEEVNSLSSKDLKKLFVFMQETDSDTHDQLKCRRC-----------------------------PALDEDVSELDKKQLTQPQIGMPAEEDLNNWNHHYSYDTVADEIMREAQAGSSLVSFVF 755
[Close]
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Match: A0A2C9VLL7_MANES (Helicase C-terminal domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VLL7_MANES)

HSP 1 Score: 218 bits (555), Expect = 1.670e-66
Identity = 124/232 (53.45%), Postives = 150/232 (64.66%), Query Frame = 1 
Query:    1 RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDKQAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIVVDQKE-----QATALSSDDLRDLFSVPTATISDTHDKVACVRC--------GELEREAKHGSCGGDGDDVEGVDGGGGDGPLPEADVLRRQRLRGYRPQIGYPAEEDLKRWSHHFKWDSMRDRVLRQVCARGLVSFVF 657
            RQK V+ FNDP +D F+FLLSSKAGGCGLNL+G NRLVLFDPDWNPANDKQAAARVWRDGQ KR ++YRFL+TGTIEEK+YQRQ+SKEGLQ ++  ++      Q   LS++DLRDLFS      S+ H+ + C RC          +E E     C  +  DV  + G  G      A VLR+  LR    Q+G P EEDL  W HHF   S+ D +L QV A   V+FVF
Sbjct:   34 RQKLVNRFNDPAKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQNDSLVSQGNFLSTEDLRDLFSFHENVRSEIHENMDCARCLFHDDGPRNIIEGEGSISRCQSE-QDVSDIGGFAG-----IAGVLRK--LRSSEKQVGTPLEEDLVSWGHHFNASSVPDAIL-QVSAGDEVTFVF 256
[Close]
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Match: A0A8K1C4Y7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4Y7_PYTOL)

HSP 1 Score: 226 bits (577), Expect = 6.450e-65
Identity = 127/230 (55.22%), Postives = 149/230 (64.78%), Query Frame = 1 
Query:    1 RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDKQAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIVVDQKEQATALSSDDLRDLFSVPTATISDTHDKVACVRCG------ELEREAKHGSCGGDGDDVEGVDG--GGGDGPLPEADVLRRQRLRGYRPQIGYPAEEDLKRWSHHFKWDSMRDRVLRQVCA---RGLVSFVF 657
            R+K VD FNDP  + F FLLSSKAGGCGLNL+GANRLVLFDPDWNPA DKQAAARVWR+GQ K C++YRFL TGT+EEKI+QRQLSKEGLQ IV D KE+  +LSS DL+ LF +   T+SDTHD++ C RC       E + E           D +G D   G  DG LP          + Y PQIG P EEDL  W HH  +DS+ D V++   A     LVSF F
Sbjct:  616 RKKLVDTFNDPTTNSFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARVWREGQKKMCYVYRFLATGTLEEKIFQRQLSKEGLQNIV-DDKEEVNSLSSKDLKRLFILRRDTLSDTHDQLKCERCQWRNPGEECDHEIIE-------VDQDGTDDSKGSSDGELPPE--------KHYHPQIGMPPEEDLNSWGHHRAYDSVDDEVMQHAIADLREALVSFAF 829
[Close]
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Match: A0A0P1AJX3_PLAHL (Dna repair and recombination protein rad54-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJX3_PLAHL)

HSP 1 Score: 226 bits (575), Expect = 1.040e-64
Identity = 129/232 (55.60%), Postives = 154/232 (66.38%), Query Frame = 1 
Query:    1 RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDKQAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIVVDQKEQATALSSDDLRDLFSVPTATISDTHDKVACVRCGELEREAKHGSCGGDG--------DDVEGVDGGGGDGPLPEADVLRRQRL--RGYRPQIGYPAEEDLKRWSHHFKWDSMRDRVLR---QVCARGLVSFVF 657
            R+K VD FNDP  + F FLLSSKAGGCGLNL+GANRLVLFDPDWNPA DKQAAARVWR+GQTK C++YRFL TGT+EEKI+QRQLSKEGLQ IV D KE+  +LSS DL+ LF     T+SDTHD++ C RC    RE  H S   D         DDV   + G  +  L E ++  ++    +GY PQIG P EEDL  W HH  + S+ D V++   Q     LVSF F
Sbjct:  602 RKKLVDTFNDPTTNSFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARVWREGQTKMCYVYRFLATGTLEEKIFQRQLSKEGLQNIV-DDKEEVNSLSSKDLKRLFVFRKDTMSDTHDQLKCDRC--QWREDSHAS---DDKVSSPIVIDDVVTNEKGIENKTLYEKEISSQENATDKGYHPQIGMPPEEDLNNWGHHRSYASVDDEVMQAALQQVENDLVSFAF 827
[Close]
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Match: A0A5J5SUV6_GOSBA (Helicase C-terminal domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A5J5SUV6_GOSBA)

HSP 1 Score: 218 bits (554), Expect = 1.450e-64
Identity = 126/233 (54.08%), Postives = 153/233 (65.67%), Query Frame = 1 
Query:    1 RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDKQAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIVVDQ-----KEQATALSSDDLRDLFSVPTATISDTHDKVACVRC--------GELER-EAKHGSCGGDGDDVEGVDGGGGDGPLPEADVLRRQRLRGYRPQIGYPAEEDLKRWSHHFKWDSMRDRVLRQVCARGLVSFVF 657
            RQK V+ FND  +D F+FLLSSKAGGCGLNL+G NRLVLFDPDWNPANDKQAAARVWRDGQ KR ++YRFL+TGTIEEK+YQRQ+SKEGLQ ++  +     K Q    S++DLRDLF+      S+ H K+ C RC        GE ER E+++GS G    D E  D GG  G     D     +L+    Q+G P EEDL  W HHF  +S+ D +L Q  A G V+FVF
Sbjct:  191 RQKLVNRFNDSTKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQVDSVKGQGNVFSTEDLRDLFTFYDNVRSEIHGKMNCNRCKNDGSENIGEQERCESENGSYG---SDQEVFDIGGFAGIAGCLD-----KLKSSEKQVGSPLEEDLVSWGHHFHSESVPDSIL-QASAGGEVTFVF 414
[Close]
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Match: A0A1Y1I9I1_KLENI (Putative SNF2 family DNA repair protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I9I1_KLENI)

HSP 1 Score: 224 bits (570), Expect = 3.040e-64
Identity = 125/229 (54.59%), Postives = 148/229 (64.63%), Query Frame = 1 
Query:    1 RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDKQAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIVVDQKE----QATALSSDDLRDLFSVPTATISDTHDKVACVRCG------ELEREAKHGSCGGDGDDVEGVDGGGGDGPLPEADVLRRQRLRGYRPQIGYPAEEDLKRWSHHFKWDSMRDRVLRQVCARGLVSFVF 657
            RQK V +FNDPV D F FLLSSKAGGCGLNL+G NRLVLFDPDWNPANDKQAAARVWRDGQ KR F+YRFL TGTIEEK+YQRQ+SKEGLQ +V  +K+    Q  A+SS++LRDLF     + SDTHD + C RC       E E  A         +D+ G            A    R  L+ +  Q+G PAEEDLK W+HH    ++ DRV++ V     VSFVF
Sbjct:  581 RQKLVQKFNDPVPDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVFIYRFLATGTIEEKVYQRQMSKEGLQQVVDTKKDDDRVQMNAISSEELRDLFKFQEQSSSDTHDSLNCGRCQAGEACTEQEPPAAAEGAPSTAEDIGGF----------AAAAGCRDILKPWERQVGTPAEEDLKSWAHHASPSTVPDRVMQSVAGDD-VSFVF 798
[Close]
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Match: A0A067CTJ9_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTJ9_SAPPC)

HSP 1 Score: 222 bits (566), Expect = 8.650e-64
Identity = 117/220 (53.18%), Postives = 144/220 (65.45%), Query Frame = 1 
Query:    1 RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDKQAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIVVDQKEQATALSSDDLRDLFSVPTATISDTHDKVACVRCGELEREAKHGSCGGDGDDVEGVDGGGGDGPLPEADVLRRQRLRGYRPQIGYPAEEDLKRWSHHFKWDSMRDRVLRQVCARG-LVSFVF 657
            R+K VD FNDP  + F FLLSSKAGGCGLNL+GANRLVLFDPDWNPA DKQAAAR+WR+GQ K+CF+YRF+ TGT+EEKI+QRQLSKEGLQ+IV D KE+  +LS+ DL+ LF     T SDTHD++ C RC                             P  +  VL   +    RPQI  PAEEDL  W+HH+ ++++ D ++R   A   LVSFVF
Sbjct:  560 RKKLVDVFNDPKTNSFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDKQAAARIWREGQKKQCFIYRFVATGTLEEKIFQRQLSKEGLQSIV-DDKEEVNSLSTKDLKKLFVFMENTDSDTHDQLKCRRC-----------------------------PNADELVLEENKKLLTRPQIDMPAEEDLNNWNHHYSYETVADDIMRDAQAGSDLVSFVF 749
[Close]
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Match: A0A0D2VAF4_GOSRA (Uncharacterized protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A0D2VAF4_GOSRA)

HSP 1 Score: 218 bits (556), Expect = 2.090e-63
Identity = 126/233 (54.08%), Postives = 154/233 (66.09%), Query Frame = 1 
Query:    1 RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDKQAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIVVDQ-----KEQATALSSDDLRDLFSVPTATISDTHDKVACVRC--------GELER-EAKHGSCGGDGDDVEGVDGGGGDGPLPEADVLRRQRLRGYRPQIGYPAEEDLKRWSHHFKWDSMRDRVLRQVCARGLVSFVF 657
            RQK V+ FND  +D F+FLLSSKAGGCGLNL+G NRLVLFDPDWNPANDKQAAARVWRDGQ KR ++YRFL+TGTIEEK+YQRQ+SKEGLQ ++  +     K Q    S++DLRDLF+      S+ H+K+ C RC        GE ER E+++GS G    D E  D GG  G     D     +L+    Q+G P EEDL  W HHF  +S+ D +L Q  A G V+FVF
Sbjct:  362 RQKLVNRFNDSTKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQVDSVKGQGNVFSTEDLRDLFTFYDNVRSEIHEKMNCNRCKNDGSENIGEQERCESENGSSG---SDQEVSDIGGFAGIAGCLD-----KLKSSEKQVGSPLEEDLISWGHHFHSESVPDAIL-QASAGGEVTFVF 585
[Close]
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Match: A0A811PLW0_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811PLW0_9POAL)

HSP 1 Score: 209 bits (533), Expect = 2.430e-63
Identity = 116/224 (51.79%), Postives = 146/224 (65.18%), Query Frame = 1 
Query:    1 RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDKQAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIV----VDQKEQATALSSDDLRDLFSVPTATISDTHDKVACVRCGELEREAKHGSCGGDGDDVEGVDGGGGDGPLPEADVLR-------RQRLRGYRPQIGYPAEEDLKRWSHHFKWDSMRDRVLRQVCARG 639
            RQK V++FND  +D F+FLLSSKAGGCGLNLVG NRLVLFDPDWNPANDKQAAARVWRDGQ KR ++YRFL+TGTIEEK+YQRQ+SKEGLQ ++     D K Q ++LS++DLRDLF+      S+ H+ + C RC +    A  G+     D    +      G    AD+ R        Q++   + QIG P EEDL  W HHF   ++ D VL+  C+ G
Sbjct:  139 RQKLVNQFNDLSRDEFVFLLSSKAGGCGLNLVGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQADNKMQGSSLSTEDLRDLFTFHEHVRSEIHENLKCSRCDKDGNSALDGTGFAATDHKASIP-----GVQDYADIGRFGEISGCLQKMNSAQHQIGRPTEEDLGSWGHHFDPSTVPDTVLQ--CSAG 355
[Close]
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Match: A0A1J3CWJ0_NOCCA (Protein CHROMATIN REMODELING 25 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CWJ0_NOCCA)

HSP 1 Score: 210 bits (535), Expect = 2.950e-63
Identity = 117/234 (50.00%), Postives = 146/234 (62.39%), Query Frame = 1 
Query:    1 RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDKQAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIVVDQK-----EQATALSSDDLRDLFSVPTATISDTHDKVACVRCGEL----------EREAKHGSCGGDGDDVEGVDGGGGDGPLPEADVLRRQRLRGYRPQIGYPAEEDLKRWSHHFKWDSMRDRVLRQVCARGLVSFVF 657
            RQK V+  ND  +D F FLLSSKAGGCGLNL+GANRLVLFDPDWNPANDKQAAARVWRDGQ KR ++YRFL+TGTIEEK+YQRQ+SKEGLQ ++  ++      Q   LS++DLRDLFS      S+ H+K++C+RC             E      +C  D +D+ G           +A+      L+    Q+G P EEDL  W HHF   S+ D +L Q  A   V+FVF
Sbjct:   76 RQKLVNRLNDQTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKEGLQKVIQHEQTNNSTRQGNLLSTEDLRDLFSFHGDVRSEIHEKMSCIRCQNASGTENMEEGNETNVDDNACQIDQEDIGGF--------AKDAECF--DLLKDSERQVGTPLEEDLASWGHHFTSKSVPDAIL-QASAGDEVTFVF 298
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94710.21850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9YDV8_9STRA1.350e-6654.09DNA repair and recombination protein RAD54 n=1 Tax... [more]
A0A2C9VLL7_MANES1.670e-6653.45Helicase C-terminal domain-containing protein n=1 ... [more]
A0A8K1C4Y7_PYTOL6.450e-6555.22Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AJX3_PLAHL1.040e-6455.60Dna repair and recombination protein rad54-like n=... [more]
A0A5J5SUV6_GOSBA1.450e-6454.08Helicase C-terminal domain-containing protein n=2 ... [more]
A0A1Y1I9I1_KLENI3.040e-6454.59Putative SNF2 family DNA repair protein n=1 Tax=Kl... [more]
A0A067CTJ9_SAPPC8.650e-6453.18Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A0D2VAF4_GOSRA2.090e-6354.08Uncharacterized protein n=3 Tax=Gossypium TaxID=36... [more]
A0A811PLW0_9POAL2.430e-6351.79Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
A0A1J3CWJ0_NOCCA2.950e-6350.00Protein CHROMATIN REMODELING 25 (Fragment) n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94710contigM-pyrifera_M_contig94710:2..733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score230.7
Seed ortholog evalue6.5e-58
Seed eggNOG ortholog115417.EPrPW00000018592
Preferred nameRAD54L
KEGG koko:K10875
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000280,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000733,GO:0001709,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006311,GO:0006312,GO:0006323,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007568,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010212,GO:0010259,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0015616,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030261,GO:0030491,GO:0030702,GO:0030716,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032075,GO:0032077,GO:0032079,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033170,GO:0033554,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0035861,GO:0036310,GO:0040029,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0043085,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051641,GO:0051701,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0061806,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071248,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097617,GO:0104004,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA repair and recombination protein RAD54. Source PGD
EggNOG OGs1MCX7@121069,COG0553@1,KOG0390@2759
COG Functional cat.L
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons2
Model size657
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816860.70565-CDS-M-pyrifera_M_contig94710:1..4761622816860.70565-CDS-M-pyrifera_M_contig94710:1..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94710 2..476 +
1692278221.39722-CDS-M-pyrifera_M_contig94710:1..4761692278221.39722-CDS-M-pyrifera_M_contig94710:1..476Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94710 2..476 +
1622816860.719761-CDS-M-pyrifera_M_contig94710:551..7331622816860.719761-CDS-M-pyrifera_M_contig94710:551..733Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94710 552..733 +
1692278221.411221-CDS-M-pyrifera_M_contig94710:551..7331692278221.411221-CDS-M-pyrifera_M_contig94710:551..733Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94710 552..733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94710.21850.1prot_M-pyrifera_M_contig94710.21850.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94710 2..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94710.21850.1

>prot_M-pyrifera_M_contig94710.21850.1 ID=prot_M-pyrifera_M_contig94710.21850.1|Name=mRNA_M-pyrifera_M_contig94710.21850.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=219bp
RQKKVDEFNDPVQDHFLFLLSSKAGGCGLNLVGANRLVLFDPDWNPANDK
QAAARVWRDGQTKRCFLYRFLTTGTIEEKIYQRQLSKEGLQTIVVDQKEQ
ATALSSDDLRDLFSVPTATISDTHDKVACVRCGELEREAKHGSCGGDGDD
VEGVDGGGGDGPLPEADVLRRQRLRGYRPQIGYPAEEDLKRWSHHFKWDS
MRDRVLRQVCARGLVSFVF
back to top

mRNA from alignment at M-pyrifera_M_contig94710:2..733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94710.21850.1 ID=mRNA_M-pyrifera_M_contig94710.21850.1|Name=mRNA_M-pyrifera_M_contig94710.21850.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig94710:2..733+ (Macrocystis pyrifera P11B4 male)
CGGCAGAAGAAGGTGGACGAGTTCAACGACCCGGTGCAGGACCACTTCCT
CTTCCTCCTCTCCTCCAAAGCAGGCGGCTGCGGCCTCAACCTGGTGGGCG
CCAACCGACTGGTGTTGTTCGACCCGGACTGGAACCCCGCGAACGACAAG
CAGGCTGCTGCGCGTGTGTGGCGCGACGGCCAGACCAAGCGCTGCTTCCT
GTACCGCTTCCTCACCACCGGCACCATCGAAGAGAAGATCTACCAGCGAC
AGCTGTCCAAGGAGGGCTTGCAGACGATCGTGGTGGACCAGAAGGAGCAG
GCGACCGCGCTGAGCAGCGACGACCTGCGCGACCTGTTCTCCGTGCCCAC
CGCCACCATCTCCGACACGCACGACAAGGTGGCTTGCGTGCGCTGCGGTG
AATTGGAGCGAGAGGCCAAGCACGGAAGCTGCGGCGGCGACGGCGACGAC
GTGGAGGGTGTCGATGGCGGCGGCGGTGGCGGTGGTGGCGGCGGTGGTGG
CGGGGATGGTGCGATGGCTGGATTGGACACACCACGCAGCACGGAGTCAG
GCGATGGGCCGCTGCCCGAGGCGGACGTGCTGCGCCGACAGCGGCTGCGA
GGGTACAGGCCGCAGATTGGATACCCTGCAGAGGAGGACCTGAAGCGGTG
GAGCCACCACTTTAAGTGGGACTCGATGCGCGACCGGGTGCTGCGCCAAG
TGTGCGCGAGGGGCCTCGTCTCCTTCGTGTTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig94710:2..733+

>mRNA_M-pyrifera_M_contig94710.21850.1 ID=mRNA_M-pyrifera_M_contig94710.21850.1|Name=mRNA_M-pyrifera_M_contig94710.21850.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1314bp|location=Sequence derived from alignment at M-pyrifera_M_contig94710:2..733+ (Macrocystis pyrifera P11B4 male)
CGGCAGAAGAAGGTGGACGAGTTCAACGACCCGGTGCAGGACCACTTCCT
CTTCCTCCTCTCCTCCAAAGCAGGCGGCTGCGGCCTCAACCTGGTGGGCG
CCAACCGACTGGTGTTGTTCGACCCGGACTGGAACCCCGCGAACGACAAG
CAGGCTGCTGCGCGTGTGTGGCGCGACGGCCAGACCAAGCGCTGCTTCCT
GTACCGCTTCCTCACCACCGGCACCATCGAAGAGAAGATCTACCAGCGAC
AGCTGTCCAAGGAGGGCTTGCAGACGATCGTGGTGGACCAGAAGGAGCAG
GCGACCGCGCTGAGCAGCGACGACCTGCGCGACCTGTTCTCCGTGCCCAC
CGCCACCATCTCCGACACGCACGACAAGGTGGCTTGCGTGCGCTGCGGTG
AATTGGAGCGAGAGGCCAAGCACGGAAGCTGCGGCGGCGACGGCGACGAC
GTGGAGGGTGTCGATGGCGGCGGCGCGGCAGAAGAAGGTGGACGAGTTCA
ACGACCCGGTGCAGGACCACTTCCTCTTCCTCCTCTCCTCCAAAGCAGGC
GGCTGCGGCCTCAACCTGGTGGGCGCCAACCGACTGGTGTTGTTCGACCC
GGACTGGAACCCCGCGAACGACAAGCAGGCTGCTGCGCGTGTGTGGCGCG
ACGGCCAGACCAAGCGCTGCTTCCTGTACCGCTTCCTCACCACCGGCACC
ATCGAAGAGAAGATCTACCAGCGACAGCTGTCCAAGGAGGGCTTGCAGAC
GATCGTGGTGGACCAGAAGGAGCAGGCGACCGCGCTGAGCAGCGACGACC
TGCGCGACCTGTTCTCCGTGCCCACCGCCACCATCTCCGACACGCACGAC
AAGGTGGCTTGCGTGCGCTGCGGTGAATTGGAGCGAGAGGCCAAGCACGG
AAGCTGCGGCGGCGACGGCGACGACGTGGAGGGTGTCGATGGCGGCGGCG
GCGATGGGCCGCTGCCCGAGGCGGACGTGCTGCGCCGACAGCGGCTGCGA
GGGTACAGGCCGCAGATTGGATACCCTGCAGAGGAGGACCTGAAGCGGTG
GAGCCACCACTTTAAGTGGGACTCGATGCGCGACCGGGTGCTGCGCCAAG
TGTGCGCGAGGGGCCTCGTCTCCTTCGTGTTTGCGATGGGCCGCTGCCCG
AGGCGGACGTGCTGCGCCGACAGCGGCTGCGAGGGTACAGGCCGCAGATT
GGATACCCTGCAGAGGAGGACCTGAAGCGGTGGAGCCACCACTTTAAGTG
GGACTCGATGCGCGACCGGGTGCTGCGCCAAGTGTGCGCGAGGGGCCTCG
TCTCCTTCGTGTTT
back to top