mRNA_M-pyrifera_M_contig9427.21765.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9427.21765.1
Unique NamemRNA_M-pyrifera_M_contig9427.21765.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9427.21765.1 vs. uniprot
Match: D8LKH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH5_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 1.030e-59
Identity = 108/187 (57.75%), Postives = 128/187 (68.45%), Query Frame = 1 
Query:    1 MLRQVIRVLSDPASAGAGGNPDEPLLLVQKLAVDEADAVFGAFDGRFVKHVSDAGAWSPLPGGFNRWAERYHRKVLRKSRPVLIAVHGDDVCALEDELSLEARM--EAAGVTQAGIGDI------ASQATGRRMPGFGEEFEVPFRYLPIGFGGFETRNGLPQTAYIDAAKQQLEIL-ETCPTAQAG 534
            MLRQV++VL+DP SAG GG PDEPLLLVQKLA+DE DA+FGAF+ RF+ + +DAG+WSPLPGGF+RW  RYHR  L  SRPVL  VHGDDVCALE EL L  R+  EA GVT   I D       AS + G R     E  +V      +     ETR+GLP TAYIDAA++Q E+L ETCP  +AG
Sbjct:    1 MLRQVVKVLTDPTSAGLGGRPDEPLLLVQKLALDETDAIFGAFEPRFLGYAADAGSWSPLPGGFSRWLARYHRVALHGSRPVLATVHGDDVCALEKELYLGVRVPSEAGGVTPNDIIDSIAEEPPASASAGFRRQATNERGKVSIPADRVR----ETRSGLPHTAYIDAARRQPEVLIETCPIDRAG 183
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9427.21765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKH5_ECTSI1.030e-5957.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9427contigM-pyrifera_M_contig9427:3707..7821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002980.1
Exons3
Model size540
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9427.21765.1prot_M-pyrifera_M_contig9427.21765.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9427 3707..7821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.544802-CDS-M-pyrifera_M_contig9427:3706..38381622816856.544802-CDS-M-pyrifera_M_contig9427:3706..3838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9427 3707..3838 -
1692278218.9563239-CDS-M-pyrifera_M_contig9427:3706..38381692278218.9563239-CDS-M-pyrifera_M_contig9427:3706..3838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9427 3707..3838 -
1622816856.5564718-CDS-M-pyrifera_M_contig9427:6252..63991622816856.5564718-CDS-M-pyrifera_M_contig9427:6252..6399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9427 6253..6399 -
1692278218.9672396-CDS-M-pyrifera_M_contig9427:6252..63991692278218.9672396-CDS-M-pyrifera_M_contig9427:6252..6399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9427 6253..6399 -
1622816856.5724323-CDS-M-pyrifera_M_contig9427:7560..78211622816856.5724323-CDS-M-pyrifera_M_contig9427:7560..7821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9427 7561..7821 -
1692278218.9770453-CDS-M-pyrifera_M_contig9427:7560..78211692278218.9770453-CDS-M-pyrifera_M_contig9427:7560..7821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9427 7561..7821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9427.21765.1

>prot_M-pyrifera_M_contig9427.21765.1 ID=prot_M-pyrifera_M_contig9427.21765.1|Name=mRNA_M-pyrifera_M_contig9427.21765.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
MLRQVIRVLSDPASAGAGGNPDEPLLLVQKLAVDEADAVFGAFDGRFVKH
VSDAGAWSPLPGGFNRWAERYHRKVLRKSRPVLIAVHGDDVCALEDELSL
EARMEAAGVTQAGIGDIASQATGRRMPGFGEEFEVPFRYLPIGFGGFETR
NGLPQTAYIDAAKQQLEILETCPTAQAGR*
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mRNA from alignment at M-pyrifera_M_contig9427:3707..7821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9427.21765.1 ID=mRNA_M-pyrifera_M_contig9427.21765.1|Name=mRNA_M-pyrifera_M_contig9427.21765.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4115bp|location=Sequence derived from alignment at M-pyrifera_M_contig9427:3707..7821- (Macrocystis pyrifera P11B4 male)
ATGCTCCGCCAGGTTATTCGTGTCCTGAGCGATCCTGCCAGCGCGGGAGC
CGGGGGCAACCCGGACGAGCCGCTGCTCCTGGTGCAGAAGCTGGCCGTGG
ACGAGGCGGACGCTGTGTTCGGAGCATTCGACGGCAGGTTTGTCAAGCAC
GTGTCGGACGCTGGAGCCTGGAGCCCTCTACCGGGGGGCTTTAATCGGTG
GGCCGAGAGGTACCACAGGAAAGTTCTAAGGAAAAGCCGCCCCGTCCTCA
TCGCCGTCCACGTGAGTTTTTTGTTTTTGTTTTTTTGCAACCGTTGGGTA
TATCTAGAACCAGTCCAGACCTCCACGCAGGTTTTTGGGTGATAAATGCT
GATGTTGCGCATGGGATAATATTTTGCGTCGGTAACAGGGTTGGGTTGAG
GCGGAGGTTTTGGTTTCTGTTTGGGTCTTGGATTCGGGTTGGTTTTGGTT
CGACTCGGTTCAGTTTTTCGATTGGGCTCGGCCCGATTTTCAGCTGGGCT
TATCTGGCTTGACTCGGTTCGGTTTGGTTCGGTTCGGTACGGTTAGGTTC
GATCCGATTCGGTTCGTCTCGGTTCGGTTCGGTTCGAATCGGTTCGGTTC
TGTTCGGTTCTGTTCGATGCGGCTCGATTCGATTCGATTCGGTTCCGTTC
GATTCGGTTCCGTTCCGTTCGGTTCGGTTCGGTTCGGTTCCGTTCGGTTC
GGTTCTGTTCGGTTCTGTTCGGTTCTGTTCGGTTCTGTTCGGTTCGGTTC
GGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTATGGCCTGGTTTGGTTT
GGCTTGGTTCGACTCGTGCTTCTCCTTGATCGTCCGCCGACCCAACGCTT
TTCGGTGCGTGAGTGACTTCCTCAGCTATTCTGTTTGATCGTCGTCTTTT
TTTTGTGTTGCTGTTGTTGTTATTGCTGTTGTCGTTTCTTATTCGTTGTT
GTTCATTCCGACATTAATTATCTCATCGCCATAACCTAGTCCGTGGGCAC
AAGCAAGGTATAAAAAAGTGTCGTTTTTCATTCATGCGGCTGTTGCCGTT
GCGTCCGTCAGGCGTCGAGCGAAAACGGCAGGCAATATACCCCCGTCCCC
GTCCCCGCCAGTGGTTCCACCTTGGTTCCTACAGTAGTTCGGAGGGTCGC
GCCTGCGAGCTTCACCGGCATCAATCTATTGACTCTTGTCTTCTCTCTCT
CAATCTCCCTTTTCTACTCCCCCAACGATGCCGAACCTCCCAAACCCAAA
CCCCGCATCCGAAAAACTGCCGGAAAAAAACGTGGGAAAACCTGCCGTGG
AAAAAAAATGCGTGAATTGAACTACACAAAAAAAAAACTATTCCTAAAAC
CAATGATGACATCATGACAACAAAACTAAACGAAACGAAACGAAACAAAA
ATGAACGTTAACAAAAAAACAGGGCGACGACGTGTGTGCCCTGGAAGATG
AGCTCTCGCTCGAGGCCAGGATGGAAGCTGCAGGCGTTACTCAAGCGGGG
ATCGGGGACATCGCTTCTCAGGCTACGGGGCGTCGGATGCCGGGTTTCGG
TGAGGAGTTCGAGGTACCTGTGGTGCTGATGACATTGGGGTGGGACCCGG
CAGGAGACCCGACCCATCACGAGAGGGCCTTGGGAAGGGACCGCGAGTGC
GCCTTGCGGGTGCTGGAGATGCCGAGGGTGGTGAAGTGGTTCACGTCGCA
CACGCGGTATGACTCGCAGACAGATGAGAAGGTGGGATGGGATGGGATAG
GATGGGATGGGATGAGATGGGATGGCGCATGGGATATGGAATGTGATACG
GGGTGGGACATGGGATAATAGACTAGATGGGATATGGGCTACTGGATTTG
ATGGGATGGCATGGGGTCTGGGAAATAATAGAATGGGGAGGGGGTGAAAT
GGCATGGTATCTGATATCTGATATCTGGGACGGGGTGAGGTGGGATGTGA
TAGGTTGGGATGCGATGGCATGGGACAGGATGGAATAAGATGGCGTAGGA
CAGGGCGGGATTGTATGGTATGGGATGTGAGTTGGGATCTGGGATGGGCT
ATGGGACGGGATGGAATGCGGTTTGGGATGGCATGGGATCTAGGAGCTGG
GAGCTGGGCTGGGGAGGAGTGAGGTCGGAGGGGATGATTTGCGGTGGGCT
GGGATGGTATGGTATAGCTTGGCATGCGACAAGACATGGTACGCGGTTTA
ATAAGGTGTGCGCGCGGCATGTCAGGGCGTGGCATGGAATGCCCTTTGTG
TGCGTTGTAGTTGGTGGGGGCAGGATAGGTGGAGGCGGGCGGGCAAGCGG
GCGGGGGTGGGCTTGGTCTTAGGTCTTGGGGGCTGGGATCTCTTCTCGGC
GCATCCACTGAGTCACGTTTCTGTTATTCTGCCTGTGTCTGTTTTGGTTC
CCGGTTCGTTCTTTTTTGGTCAATCTGTGTGTGTTTTTGTGCGTGTGTTG
GTCTGCTGTAGTTGATGGTGTTAATAGTTGTCGTTGAGGACTTTGGTATT
ATTCTTAAGAATAGCGCCATTGCTCAATATATTGATATTACTGGCGCTGC
GTATGTAAGGGCATTATCGATAGTATCTGTGTTGTCACTATGTTGTTCTT
TTTGTGCCGTTCAAGTTTTTGGAGCAGTCCTATGTACTATTAAAAAATTC
TCGCGTGCCTGTGTAGTGTCGGTCTGTGTACAAGCACCGAGACCAACCGG
GCGCACATTCACTGCATCGACGTTGCGTGGATTGATGTGCCGTGGCGCCT
TCCAGGGACCTCTCGGGCCCGAATTTTTTTCACTACTACATATATATATA
TATATATATTTACAATGTACAATGTACCGCTGCAGCAGTAGTAGTAGTAT
GACCACGGTAAATAGGACCTGTGGTACACGCAAAACCTATGTATGTATCT
ATTTTTACCAACACTATTTGGTCCTATTTACTATAGTCCCCAGTAATATC
AAGTCGGTCGCCCCGATGGTCTACCAATGGTGGTCACCCTCGAATGCTAT
TATCACTATAAACATTACTAAGGCTGAAAAATTAAAGAAAAAATCGACTG
CTGAGAAACTGCTGAGAGCGCGTATTCATAGCGTGGGAAGGCGCAATTCG
GCGCGAGTCGACGGGAGAAGAAAGAGCTGAAGTATTGTCGCGATAAAGCA
AGACTCGAACAGTAGTGGGGGGGGGGGGGGGAAAGAGAGCCTATTGCTGC
TGTGTTTCCCCGGAGCTGAGTTACGACTATTTACGGGGGACCGTAGTAAA
TAGGACCAAATCTCGCTAGTAAAAATAGGGAAATGTATAGGTTTTTGTGT
TTACCGTAGGTCCTATTTACTATGGTCCCCCGTCATAGGAAGGAGAGTGC
CAAGAGAGTGCCAACAAGGCCGAGGATAACAAAAGGGTAACAATAGAATA
TAGTAGATAAAGCATAGCGGGAAGTAGAAATAGAAGATAGCTGCTACGGG
TGACCGTAGTAAATAGGACCAAATATTGCTAGTAAAAATAGGTGAATACA
TAGGTTTTTGTGTGTACCGTAGGTCCTGTTAACTATGGTCCCCCGTTATA
GACTTCAGCGTAGGTTTCCTTTGTTTCCGTCGTTTTCTTCCTTCAGGAAT
GTTTTGAGTGATCAACGTTGGAGCTCATGCTGCTGCACGTTGTTCTGTGC
TGGTCGGCAAACATGATAATGATAAAAGGGACGGAAAAATTACATTGAAA
AGTACTCGTAGTAGTACGTACGAATACTTTCACTGAGAGTTTGTCGACCC
TATAGACTACACTCAACTTGTTTTTTTTCTGTTTTGTTCGTGGTTGGTTG
GTTGTCCTGCGTTTTTTCATGTAAAAAACATAGAATGTTAATATTCCAGA
TTCGTATAAGATACGTTTTTCGCTTCTTTTTTTTTCATGTTTTGTTTCGT
TTCTTTTCGTATTTGTTACTAGTATTTATTCACTTCTTCGACCGTTGTGT
TTCTTGTGTTTCTTACATATATATGTGTATCAGTTCCGCTACCTGCCCAT
CGGCTTCGGGGGCTTTGAGACGCGCAATGGCTTGCCGCAGACGGCCTACA
TCGATGCCGCCAAGCAGCAGTTGGAGATACTGGAGACATGCCCCACCGCG
CAGGCAGGGAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9427:3707..7821-

>mRNA_M-pyrifera_M_contig9427.21765.1 ID=mRNA_M-pyrifera_M_contig9427.21765.1|Name=mRNA_M-pyrifera_M_contig9427.21765.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig9427:3707..7821- (Macrocystis pyrifera P11B4 male)
ATGCTCCGCCAGGTTATTCGTGTCCTGAGCGATCCTGCCAGCGCGGGAGC
CGGGGGCAACCCGGACGAGCCGCTGCTCCTGGTGCAGAAGCTGGCCGTGG
ACGAGGCGGACGCTGTGTTCGGAGCATTCGACGGCAGGTTTGTCAAGCAC
GTGTCGGACGCTGGAGCCTGGAGCCCTCTACCGGGGGGCTTTAATCGGTG
GGCCGAGAGGTACCACAGGAAAGTTCTAAGGAAAAGCCGCCCCGTCCTCA
TCGCCGTCCACATGCTCCGCCAGGTTATTCGTGTCCTGAGCGATCCTGCC
AGCGCGGGAGCCGGGGGCAACCCGGACGAGCCGCTGCTCCTGGTGCAGAA
GCTGGCCGTGGACGAGGCGGACGCTGTGTTCGGAGCATTCGACGGCAGGT
TTGTCAAGCACGTGTCGGACGCTGGAGCCTGGAGCCCTCTACCGGGGGGC
TTTAATCGGTGGGCCGAGAGGTACCACAGGAAAGTTCTAAGGAAAAGCCG
CCCCGTCCTCATCGCCGTCCACGGCGACGACGTGTGTGCCCTGGAAGATG
AGCTCTCGCTCGAGGCCAGGATGGAAGCTGCAGGCGTTACTCAAGCGGGG
ATCGGGGACATCGCTTCTCAGGCTACGGGGCGTCGGATGCCGGGTTTCGG
TGAGGAGTTCGAGGTACCTGGCGACGACGTGTGTGCCCTGGAAGATGAGC
TCTCGCTCGAGGCCAGGATGGAAGCTGCAGGCGTTACTCAAGCGGGGATC
GGGGACATCGCTTCTCAGGCTACGGGGCGTCGGATGCCGGGTTTCGGTGA
GGAGTTCGAGGTACCTTTCCGCTACCTGCCCATCGGCTTCGGGGGCTTTG
AGACGCGCAATGGCTTGCCGCAGACGGCCTACATCGATGCCGCCAAGCAG
CAGTTGGAGATACTGGAGACATGCCCCACCGCGCAGGCAGGGAGGTGATT
CCGCTACCTGCCCATCGGCTTCGGGGGCTTTGAGACGCGCAATGGCTTGC
CGCAGACGGCCTACATCGATGCCGCCAAGCAGCAGTTGGAGATACTGGAG
ACATGCCCCACCGCGCAGGCAGGGAGGTGA
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