mRNA_M-pyrifera_M_contig94213.21758.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94213.21758.1
Unique NamemRNA_M-pyrifera_M_contig94213.21758.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94213.21758.1 vs. uniprot
Match: A0A2M8B747_9DELT (PMT_2 domain-containing protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A2M8B747_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 6.800e-5
Identity = 45/144 (31.25%), Postives = 66/144 (45.83%), Query Frame = 1 
Query:    4 HHPALYTHLIALSLRVFGNVEWAVRIVPLTFSMLSLLIAARCLRRWFGAEVALFAAAWMAALPLFAWYGMLPWTEGVLVGIGCLQLGAYARWCAAGPGAARRAFLVMCGWQFVAVLFDWTGAFMCVGIGLHALCFGRWRRFAKL 435
            HHP L    +A+   +FG  EWA R+VP  +S+LS  +    +RR +G+ VA+ +      LP+   Y  +   E   +    + L  Y R    G   ARR    +    F+A  FDW   ++   + LHAL  G  R   KL
Sbjct:   82 HHPLLLHLHVAVMFVLFGEHEWAARLVPAIYSVLSAAMLYFLVRRLWGSRVAVVSLFVFVCLPIDLIYANMVDHEQGSIFWSLVMLHHYLRLRETG---ARRNLWGLLAATFMACQFDWPPYYIAFFLFLHALVGGLRRHPVKL 222
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94213.21758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2M8B747_9DELT6.800e-531.25PMT_2 domain-containing protein n=2 Tax=unclassifi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94213contigM-pyrifera_M_contig94213:3..665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size663
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816856.2527375-CDS-M-pyrifera_M_contig94213:2..6651622816856.2527375-CDS-M-pyrifera_M_contig94213:2..665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94213 3..665 +
1692278218.8167274-CDS-M-pyrifera_M_contig94213:2..6651692278218.8167274-CDS-M-pyrifera_M_contig94213:2..665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94213 3..665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94213.21758.1prot_M-pyrifera_M_contig94213.21758.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94213 3..665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94213.21758.1

>prot_M-pyrifera_M_contig94213.21758.1 ID=prot_M-pyrifera_M_contig94213.21758.1|Name=mRNA_M-pyrifera_M_contig94213.21758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp
THHPALYTHLIALSLRVFGNVEWAVRIVPLTFSMLSLLIAARCLRRWFGA
EVALFAAAWMAALPLFAWYGMLPWTEGVLVGIGCLQLGAYARWCAAGPGA
ARRAFLVMCGWQFVAVLFDWTGAFMCVGIGLHALCFGRWRRFAKLLWLGV
PIFLAAGLHALHMNLVLGGLHQATETKATLAAVTALPTETLAEFVRLQFG
HARRFLGLPAYVLVLAGALVL
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mRNA from alignment at M-pyrifera_M_contig94213:3..665+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94213.21758.1 ID=mRNA_M-pyrifera_M_contig94213.21758.1|Name=mRNA_M-pyrifera_M_contig94213.21758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=663bp|location=Sequence derived from alignment at M-pyrifera_M_contig94213:3..665+ (Macrocystis pyrifera P11B4 male)
ACGCACCACCCGGCGCTCTACACGCACTTGATCGCGCTGTCGCTGCGCGT
GTTCGGCAACGTGGAGTGGGCCGTGCGGATCGTGCCGCTGACGTTCTCGA
TGCTGTCGCTCTTGATCGCGGCGCGCTGTCTGCGGCGCTGGTTCGGAGCC
GAGGTCGCGCTCTTTGCGGCGGCGTGGATGGCGGCGCTGCCGCTGTTCGC
GTGGTACGGGATGCTGCCGTGGACCGAGGGCGTGCTGGTCGGGATCGGGT
GCCTGCAGCTCGGGGCGTACGCGCGGTGGTGTGCGGCTGGACCGGGAGCC
GCGCGGCGCGCCTTCCTGGTCATGTGCGGCTGGCAGTTCGTCGCGGTGCT
GTTCGACTGGACCGGCGCGTTCATGTGCGTCGGGATCGGGCTGCATGCGC
TCTGCTTCGGGCGCTGGCGGCGCTTCGCCAAGCTGCTGTGGCTGGGGGTG
CCGATCTTCCTGGCGGCCGGCCTGCACGCGCTGCACATGAACCTGGTGCT
GGGCGGGCTGCACCAGGCGACCGAGACCAAGGCAACGCTCGCCGCCGTGA
CCGCGCTGCCCACCGAGACCCTCGCTGAGTTCGTGCGGCTTCAATTTGGC
CACGCGCGGCGTTTCCTCGGGTTGCCGGCGTACGTGCTGGTGCTCGCCGG
TGCGCTGGTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94213:3..665+

>mRNA_M-pyrifera_M_contig94213.21758.1 ID=mRNA_M-pyrifera_M_contig94213.21758.1|Name=mRNA_M-pyrifera_M_contig94213.21758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig94213:3..665+ (Macrocystis pyrifera P11B4 male)
ACGCACCACCCGGCGCTCTACACGCACTTGATCGCGCTGTCGCTGCGCGT
GTTCGGCAACGTGGAGTGGGCCGTGCGGATCGTGCCGCTGACGTTCTCGA
TGCTGTCGCTCTTGATCGCGGCGCGCTGTCTGCGGCGCTGGTTCGGAGCC
GAGGTCGCGCTCTTTGCGGCGGCGTGGATGGCGGCGCTGCCGCTGTTCGC
GTGGTACGGGATGCTGCCGTGGACCGAGGGCGTGCTGGTCGGGATCGGGT
GCCTGCAGCTCGGGGCGTACGCGCGGTGGTGTGCGGCTGGACCGGGAGCC
GCGCGGCGCGCCTTCCTGGTCATGTGCGGCTGGCAGTTCGTCGCGGTGCT
GTTCGACTGGACCGGCGCGTTCATGTGCGTCGGGATCGGGCTGCATGCGC
TCTGCTTCGGGCGCTGGCGGCGCTTCGCCAAGCTGCTGTGGCTGGGGGTG
CCGATCTTCCTGGCGGCCGGCCTGCACGCGCTGCACATGAACCTGGTGCT
GGGCGGGCTGCACCAGGCGACCGAGACCAAGGCAACGCTCGCCGCCGTGA
CCGCGCTGCCCACCGAGACCCTCGCTGAGTTCGTGCGGCTTCAATTTGGC
CACGCGCGGCGTTTCCTCGGGTTGCCGGCGTACGTGCTGGTGCTCGCCGG
TGCGCTGGTGCTCACGCACCACCCGGCGCTCTACACGCACTTGATCGCGC
TGTCGCTGCGCGTGTTCGGCAACGTGGAGTGGGCCGTGCGGATCGTGCCG
CTGACGTTCTCGATGCTGTCGCTCTTGATCGCGGCGCGCTGTCTGCGGCG
CTGGTTCGGAGCCGAGGTCGCGCTCTTTGCGGCGGCGTGGATGGCGGCGC
TGCCGCTGTTCGCGTGGTACGGGATGCTGCCGTGGACCGAGGGCGTGCTG
GTCGGGATCGGGTGCCTGCAGCTCGGGGCGTACGCGCGGTGGTGTGCGGC
TGGACCGGGAGCCGCGCGGCGCGCCTTCCTGGTCATGTGCGGCTGGCAGT
TCGTCGCGGTGCTGTTCGACTGGACCGGCGCGTTCATGTGCGTCGGGATC
GGGCTGCATGCGCTCTGCTTCGGGCGCTGGCGGCGCTTCGCCAAGCTGCT
GTGGCTGGGGGTGCCGATCTTCCTGGCGGCCGGCCTGCACGCGCTGCACA
TGAACCTGGTGCTGGGCGGGCTGCACCAGGCGACCGAGACCAAGGCAACG
CTCGCCGCCGTGACCGCGCTGCCCACCGAGACCCTCGCTGAGTTCGTGCG
GCTTCAATTTGGCCACGCGCGGCGTTTCCTCGGGTTGCCGGCGTACGTGC
TGGTGCTCGCCGGTGCGCTGGTGCTC
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