mRNA_M-pyrifera_M_contig9408.21712.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9408.21712.1
Unique NamemRNA_M-pyrifera_M_contig9408.21712.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9408.21712.1 vs. uniprot
Match: A0A6H5K9K8_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K8_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.350e-28
Identity = 116/318 (36.48%), Postives = 138/318 (43.40%), Query Frame = 1 
Query:   82 GVATVVNVHLGNQDTEDNHNQVTGLLSLLEDL----LDTSRLPEG---RMNNQRPLTPTSMSPEGERDGG--LALMGGGGGSGHQRPRLLIVAGDFNFNATSTGYRRLVGEGGLESAA---------------------------------AXXXXXXXLTNGIXXXXRDWARARVLRGKXXXEAGNGVEEGEGRAGDSAALDEYAGDDDGNVGXXXXXXDWSGRGGVDRIGVGDGVGGRGVDADGGDXXXXXXXXXXXXXXXXXXXXXXDDAPLDFVFFSSGPGAYFA-AYEVHREFSQERYADGYPSVTDFDVSCP 906
            GVATVVNVHLGN+   D   QVTGLLSLLEDL    L T  L E    R +   P T      +  R  G  LA+ G       +  RLLIV GDFNF +TS+GYRR+V EGGL+SAA                                           +G+    R+  R+ V  G     A  GV  G               ++DG+                D +GVG G GG   D D GD                      +   LDFVFFS+G G     +YEVHREFSQERYADGYPSV +F+VSCP
Sbjct:    2 GVATVVNVHLGNEG--DTEKQVTGLLSLLEDLRAGNLRTRDLRERDGIRRDQHMPKTSNQRRRKLRRKKGEDLAVRGL-----DEDRRLLIVVGDFNFESTSSGYRRMVSEGGLQSAANVSAEAAEAEATGWFPPATASNFPAIIPNYPVKVYHPAPKLADDGVVPDKREVLRSLVGDGAAAVNASEGVAGGV--------------ENDGHRN--------------DALGVGSGSGGVVDDFDDGDVVGGVSAMRVDTFVAGDAD---NRGALDFVFFSAGGGGISCRSYEVHREFSQERYADGYPSVAEFEVSCP 281
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BLAST of mRNA_M-pyrifera_M_contig9408.21712.1 vs. uniprot
Match: D7FZJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.980e-14
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 WGWRRLPRGSGENACEVHATLSLGEGRGVATVVNVHLGNQ-DTE 129
            WGWRRLPRG GENAC VHATLSLG G GVATVVNVHLGN+ DTE
Sbjct:  102 WGWRRLPRGPGENACVVHATLSLGGGMGVATVVNVHLGNEGDTE 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9408.21712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9K8_9PHAE4.350e-2836.48Endo/exonuclease/phosphatase domain-containing pro... [more]
D7FZJ1_ECTSI2.980e-1486.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9408contigM-pyrifera_M_contig9408:938..2540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size921
Cds size921
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816854.041162-CDS-M-pyrifera_M_contig9408:937..10811622816854.041162-CDS-M-pyrifera_M_contig9408:937..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9408 938..1081 +
1692278217.5547774-CDS-M-pyrifera_M_contig9408:937..10811692278217.5547774-CDS-M-pyrifera_M_contig9408:937..1081Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9408 938..1081 +
1622816854.0536623-CDS-M-pyrifera_M_contig9408:1763..25401622816854.0536623-CDS-M-pyrifera_M_contig9408:1763..2540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9408 1764..2540 +
1692278217.5646133-CDS-M-pyrifera_M_contig9408:1763..25401692278217.5646133-CDS-M-pyrifera_M_contig9408:1763..2540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9408 1764..2540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9408.21712.1prot_M-pyrifera_M_contig9408.21712.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9408 938..2540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9408.21712.1

>prot_M-pyrifera_M_contig9408.21712.1 ID=prot_M-pyrifera_M_contig9408.21712.1|Name=mRNA_M-pyrifera_M_contig9408.21712.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=307bp
WGWRRLPRGSGENACEVHATLSLGEGRGVATVVNVHLGNQDTEDNHNQVT
GLLSLLEDLLDTSRLPEGRMNNQRPLTPTSMSPEGERDGGLALMGGGGGS
GHQRPRLLIVAGDFNFNATSTGYRRLVGEGGLESAAAAAATSLELTNGIG
SGSRDWARARVLRGKGEGEAGNGVEEGEGRAGDSAALDEYAGDDDGNVGG
GGGGGDWSGRGGVDRIGVGDGVGGRGVDADGGDDDDDAAAADDDDDDDGD
GGGSEDDAPLDFVFFSSGPGAYFAAYEVHREFSQERYADGYPSVTDFDVS
CPLPPS*
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mRNA from alignment at M-pyrifera_M_contig9408:938..2540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9408.21712.1 ID=mRNA_M-pyrifera_M_contig9408.21712.1|Name=mRNA_M-pyrifera_M_contig9408.21712.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1603bp|location=Sequence derived from alignment at M-pyrifera_M_contig9408:938..2540+ (Macrocystis pyrifera P11B4 male)
TGGGGATGGCGAAGACTGCCTCGGGGGTCGGGGGAAAATGCGTGCGAAGT
CCATGCAACTCTGTCTCTTGGAGAGGGAAGGGGCGTCGCTACCGTCGTCA
ATGTGCATCTCGGTAATCAAGACACAGAGGACAACCACAATCAGGTATGC
CGCTGTTCTTTTCTTTTTTTTCTTTTCTTTCTTTTCTTTTCTTTTTTCCC
GCAGGCGGAATGGTTTGTAAACTAAGACTTGAGCTCTCCACAAATTACCG
CAGCTGAGGAACTATCTGTAGTTGATATGTAGATAGATGATCTATCTGTA
CATGATCTGGATCGTGTCTAGATTACCTATCACGGGGGACCACAGTAATC
AGGACCCACAATAACACAATAACCTACATACGACCATATTTTCACTACGC
AAAGTTGGTCCTGATAACTACGTTTCCTCCCGTAATACATCGTGATCTCC
CCGGCGTGTTACCCCTCATAACTCCCAAAGGGGTTCACCAAAGCAGTTAT
TCCACCCGGACCGTACCCCAGCCCACCCCACCCCATCCAGTACTACCCTA
CCGCGATACAAGTTTGCTGGGCTACTGTCTCTTCTCGAGGACCTATTGGG
ATACGAACGTGCGGCTTAGAGGCTCCTTGAGGACAGAAGGAGTGTGTGTC
TTGTTGTGCAAGGCGCCATTTGTTTATGGTCACACCTCCATTTTTTCCCA
GAACAATTTACGGAAGTACTCTCCCCGACCTTACCCCACCCTGACCCTAC
CCTATCCAATCCGACCCAACCCAACCCAACCCAACTCAACCCAACCCAAC
CCAACCCACCGCAACCGTGATGTAAGGTTACCGGGCTACTGTCTCTGCTC
GAAGACCTATTAGACACTTCGAGACTCCCTGAGGGAAGAATGAACAATCA
ACGTCCGCTGACCCCAACATCTATGTCTCCCGAGGGTGAAAGAGATGGAG
GCTTGGCCCTCATGGGAGGTGGGGGGGGGAGCGGGCACCAGCGGCCGAGG
CTTCTGATCGTGGCTGGAGATTTTAACTTTAACGCCACCTCGACTGGTTA
TCGTCGTCTTGTGGGAGAGGGTGGACTGGAATCAGCCGCCGCCGCCGCCG
CGACATCCCTTGAGCTTACAAATGGGATTGGTAGTGGAAGTAGGGATTGG
GCGCGGGCACGCGTCCTTCGTGGAAAAGGAGAAGGGGAAGCAGGAAACGG
GGTGGAAGAAGGAGAGGGGAGGGCGGGAGACTCTGCGGCATTGGATGAGT
ATGCCGGCGATGACGATGGTAATGTTGGTGGTGGTGGTGGTGGTGGTGAT
TGGAGTGGTCGTGGTGGTGTTGATCGTATTGGTGTTGGTGATGGTGTTGG
TGGTCGTGGTGTTGATGCTGATGGTGGTGATGATGATGATGATGCTGCTG
CTGCTGATGATGATGACGATGACGATGGAGATGGTGGTGGCAGTGAAGAT
GACGCCCCTCTGGACTTCGTGTTTTTTTCTTCAGGGCCAGGGGCGTACTT
CGCCGCGTACGAGGTACATCGAGAGTTTTCGCAGGAACGGTACGCCGACG
GCTACCCTTCCGTCACCGATTTTGACGTTTCATGTCCGCTGCCCCCTTCC
TGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9408:938..2540+

>mRNA_M-pyrifera_M_contig9408.21712.1 ID=mRNA_M-pyrifera_M_contig9408.21712.1|Name=mRNA_M-pyrifera_M_contig9408.21712.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1842bp|location=Sequence derived from alignment at M-pyrifera_M_contig9408:938..2540+ (Macrocystis pyrifera P11B4 male)
TGGGGATGGCGAAGACTGCCTCGGGGGTCGGGGGAAAATGCGTGCGAAGT
CCATGCAACTCTGTCTCTTGGAGAGGGAAGGGGCGTCGCTACCGTCGTCA
ATGTGCATCTCGGTAATCAAGACACAGAGGACAACCACAATCAGTGGGGA
TGGCGAAGACTGCCTCGGGGGTCGGGGGAAAATGCGTGCGAAGTCCATGC
AACTCTGTCTCTTGGAGAGGGAAGGGGCGTCGCTACCGTCGTCAATGTGC
ATCTCGGTAATCAAGACACAGAGGACAACCACAATCAGGTTACCGGGCTA
CTGTCTCTGCTCGAAGACCTATTAGACACTTCGAGACTCCCTGAGGGAAG
AATGAACAATCAACGTCCGCTGACCCCAACATCTATGTCTCCCGAGGGTG
AAAGAGATGGAGGCTTGGCCCTCATGGGAGGTGGGGGGGGGAGCGGGCAC
CAGCGGCCGAGGCTTCTGATCGTGGCTGGAGATTTTAACTTTAACGCCAC
CTCGACTGGTTATCGTCGTCTTGTGGGAGAGGGTGGACTGGAATCAGCCG
CCGCCGCCGCCGCGACATCCCTTGAGCTTACAAATGGGATTGGTAGTGGA
AGTAGGGATTGGGCGCGGGCACGCGTCCTTCGTGGAAAAGGAGAAGGGGA
AGCAGGAAACGGGGTGGAAGAAGGAGAGGGGAGGGCGGGAGACTCTGCGG
CATTGGATGAGTATGCCGGCGATGACGATGGTAATGTTGGTGGTGGTGGT
GGTGGTGGTGATTGGAGTGGTCGTGGTGGTGTTGATCGTATTGGTGTTGG
TGATGGTGTTGGTGGTCGTGGTGTTGATGCTGATGGTGGTGATGATGATG
ATGATGCTGCTGCTGCTGATGATGATGACGATGACGATGGAGATGGTGGT
GGCAGTGAAGATGACGCCCCTCTGGACTTCGTGTTTTTTTCTTCAGGGCC
AGGGGCGTACTTCGCCGCGTACGAGGTACATCGAGAGTTTTCGCAGGAAC
GGTACGCCGACGGCTACCCTTCCGTCACCGATTTTGACGTTTCATGTCCG
CTGCCCCCTTCCTGAGTTACCGGGCTACTGTCTCTGCTCGAAGACCTATT
AGACACTTCGAGACTCCCTGAGGGAAGAATGAACAATCAACGTCCGCTGA
CCCCAACATCTATGTCTCCCGAGGGTGAAAGAGATGGAGGCTTGGCCCTC
ATGGGAGGTGGGGGGGGGAGCGGGCACCAGCGGCCGAGGCTTCTGATCGT
GGCTGGAGATTTTAACTTTAACGCCACCTCGACTGGTTATCGTCGTCTTG
TGGGAGAGGGTGGACTGGAATCAGCCGCCGCCGCCGCCGCGACATCCCTT
GAGCTTACAAATGGGATTGGTAGTGGAAGTAGGGATTGGGCGCGGGCACG
CGTCCTTCGTGGAAAAGGAGAAGGGGAAGCAGGAAACGGGGTGGAAGAAG
GAGAGGGGAGGGCGGGAGACTCTGCGGCATTGGATGAGTATGCCGGCGAT
GACGATGGTAATGTTGGTGGTGGTGGTGGTGGTGGTGATTGGAGTGGTCG
TGGTGGTGTTGATCGTATTGGTGTTGGTGATGGTGTTGGTGGTCGTGGTG
TTGATGCTGATGGTGGTGATGATGATGATGATGCTGCTGCTGCTGATGAT
GATGACGATGACGATGGAGATGGTGGTGGCAGTGAAGATGACGCCCCTCT
GGACTTCGTGTTTTTTTCTTCAGGGCCAGGGGCGTACTTCGCCGCGTACG
AGGTACATCGAGAGTTTTCGCAGGAACGGTACGCCGACGGCTACCCTTCC
GTCACCGATTTTGACGTTTCATGTCCGCTGCCCCCTTCCTGA
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