mRNA_M-pyrifera_M_contig94032.21705.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94032.21705.1
Unique NamemRNA_M-pyrifera_M_contig94032.21705.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Match: A0A482UL41_9ARCH (Rtt106 domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UL41_9ARCH)

HSP 1 Score: 130 bits (326), Expect = 1.320e-32
Identity = 72/176 (40.91%), Postives = 108/176 (61.36%), Query Frame = 1
Query:  238 LHSAISAQTRSAAIGGKIIAEFDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVPN------DSGRVMLIVSLEKPVYQGQHRFPHLIMALDSVSHTLDLSAMDAADRAQKELEPRYKGMLPNVLTM----------VLKAMTGKSVLRPGSFKSQTGTSA 717
            LH+ ++     A + G  +AEFD+ +   L PRGR+++ELY TFMR+V   F++K+AY S+AR+F LP P+      D  R +L++SL+ P+  G  R PHLIM LD V ++ DL+  DA  R+      RY+G++ +  T+          +LK +TGK VL+PG+F+S TG SA
Sbjct:    2 LHALVAQGAGVAGLSGDAVAEFDEDVGQFLVPRGRYAIELYPTFMRLVGKTFEFKVAYKSIARMFMLPKPSPTVAAGDETRFLLVISLDDPLRHGNQRHPHLIMQLDRVPYSTDLNISDADLRSG-----RYEGLVKDSKTVTGDLHKVVGHLLKHVTGKPVLKPGAFRSSTGHSA 172          
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Match: A0A836C825_9STRA (FACT complex subunit SSRP1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C825_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.750e-29
Identity = 70/225 (31.11%), Postives = 118/225 (52.44%), Query Frame = 1
Query:   40 VKRDDECLVQMRLFFPEGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVGADAIFSAESLHSAISAQTRSAAIGGKIIAEFDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVPNDSGRVMLIVSLEKPVYQGQHRFPHLIMALDSVSHTLDLSAMDAA--DRAQKELEPRYKGMLPNVLTMVLKAMTGKSVLRPGSFKSQTG 708
            + RD +CLV+MRL+ P+ +                                          F+AE+ H A+  +     + G ++ E D SL + L PRGR++LE+Y TF+RM  +K+D+KI Y  + +LF L  P+D   V  ++SL+KPV QGQ R+ HL++    V  TL+L+  +A   ++ +  LEP  +G L N++  + K+++G++V   G+++S  G
Sbjct:   97 LSRDKDCLVEMRLYLPDESEDDDGMEVDEDGEAIRKKDKKPR-------------------FTAETFHQAVMDRANIRDVKGSVLCELDSSLGTFLTPRGRYALEMYSTFLRMHGSKYDYKIQYEDINKLFLLEKPDDR-YVAFVISLDKPVRQGQQRYQHLVLQASKVEETLNLNMSEAELQEKYKGALEPVMRGALCNLIAKIFKSLSGRAVFVTGNYRSAAG 301          
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Match: A0A024G5S3_9STRA (Rtt106 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G5S3_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.050e-28
Identity = 75/240 (31.25%), Postives = 119/240 (49.58%), Query Frame = 1
Query:    1 KEEVELIFGEDDTVKRDDECLVQMRLFFPEGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVGADAIFSAESLHSAISAQTRSAAIGGKIIAEFDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVPNDSGRVMLIVSLEKPVYQGQHRFPHLIMALDSVSHTLDLS-AMDAADRAQKELEPRYKGMLPNVLTMVLKAMTGKSVLRPGSFKSQTGTSA 717
            K EVEL F EDDTV  D+E LV+MRL+ P  +A                                     ++ ++SAE+    +  +     + GK I E D+S+ + L PRGR+ +E+YG+F+RM    FD+KI YS++ R F L +PN       ++SLE+P+ QG+  +PHL++ L      +D++ +     +    +  R  G LP ++  + K + GK V   G FK+ +G  A
Sbjct:  846 KNEVELQFHEDDTVAGDEETLVEMRLYLPPSSAFSSSMQDEDVDGSENPAKKDSSQ--------------SEMLYSAEAFRDEVLHRANIRNVTGKSIVELDESIGTFLTPRGRYGVEIYGSFLRMHGKTFDYKIMYSNINRCFLLELPNGLNTAF-VISLEEPIRQGKQGYPHLVLQLSKEDVHIDVNLSTQEIQKYNGNIHERMSGALPQIVATIFKFVIGKKVYTSGKFKTHSGDRA 1070          
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Match: F0WCZ8_9STRA (FACT complex subunit SSRP1 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCZ8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.920e-28
Identity = 74/240 (30.83%), Postives = 117/240 (48.75%), Query Frame = 1
Query:    1 KEEVELIFGEDDTVKRDDECLVQMRLFFPEGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVGADAIFSAESLHSAISAQTRSAAIGGKIIAEFDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVPNDSGRVMLIVSLEKPVYQGQHRFPHLIMALDSVSHTLDLS-AMDAADRAQKELEPRYKGMLPNVLTMVLKAMTGKSVLRPGSFKSQTGTSA 717
            K EVEL F EDDTV  D+E LV+MRL+ P                                         ++ ++SAE+    +  +     + GK I E D+S+ + L PRGR+ +E+YG+F+RM    FD+KI YS++ R F L +PN       ++SLE+P+ QG+  +PHL++ L      +D++ +     +    +  R  G LP ++  + K + GK V   G FK+ +G  A
Sbjct:  199 KNEVELQFHEDDTVAGDEETLVEMRLYLPPSGTIGSSMQDEDEAENPARKDSSQ----------------SEMLYSAEAFRDEVLHRANIRNVTGKSIVELDESIGTFLTPRGRYGVEIYGSFLRMHGKTFDYKIMYSNINRCFLLELPNGLNTAF-VISLEEPIRQGKQGYPHLVLQLSKEDVHIDVNLSTQEIQKYNGNIHERMSGALPQIVATIFKFVIGKKVYTSGKFKTHSGDRA 421          
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Match: A0A812WXA1_9DINO (FACT complex subunit SSRP1 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WXA1_9DINO)

HSP 1 Score: 115 bits (287), Expect = 5.710e-26
Identity = 79/250 (31.60%), Postives = 120/250 (48.00%), Query Frame = 1
Query:    7 EVELIFGEDDTVKRDDECLVQMRLFFPEGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVGADAI----FSAESLHSAISAQTRSAAIGGKIIAEFDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVP----NDSG-----RVMLIVSLEKPVYQGQHRFPHLIMALDSVSHTLDLSAMDAADRAQKELEPRYKGMLPNVLTMVLKAMTGKSVLRPGSFKSQTGTSA 717
            E+E+   EDDT++R+DE LV+MRLFFP G                                  A    A+ +     SA  +H A+          G+  AEF + + + LAPRGR+++E+Y TF+R+V    ++K+ ++ ++R+F+LP P    ++ G     R   ++SL+ P+ QGQ R+PHL+M L +      L+      R  K L       LP  +  VLKA TGK + RP  F S  G  A
Sbjct:  166 EIEVQLQEDDTLEREDEALVEMRLFFPPGHGELDSADKAAQDGAVTSAALASGRAEPLEGEDSASGTPAERVRARLISAAGIHGAV----------GEAAAEFPERVGAFLAPRGRYAVEVYPTFLRLVGKSNEFKVTHAKISRMFYLPRPGAAKDEDGNPLPDRFYFVISLQDPLRQGQQRYPHLVMNLTTDQFECRLNCTPERLRDLK-LPAVVSDALPMTIAKVLKAFTGKKLFRPQHFSSSAGHKA 404          
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Match: A0A5A8D8E2_CAFRO (FACT complex subunit SSRP1 n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D8E2_CAFRO)

HSP 1 Score: 115 bits (287), Expect = 1.070e-25
Identity = 79/250 (31.60%), Postives = 120/250 (48.00%), Query Frame = 1
Query:    7 EVELIFGEDDTVKRDDECLVQMRLFFPEGAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVGADAI----FSAESLHSAISAQTRSAAIGGKIIAEFDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVP----NDSG-----RVMLIVSLEKPVYQGQHRFPHLIMALDSVSHTLDLSAMDAADRAQKELEPRYKGMLPNVLTMVLKAMTGKSVLRPGSFKSQTGTSA 717
            E+E+   EDDT++R+DE LV+MRLFFP G                                  A    A+ +     SA  +H A+          G+  AEF + + + LAPRGR+++E+Y TF+R+V    ++K+ ++ ++R+F+LP P    ++ G     R   ++SL+ P+ QGQ R+PHL+M L +      L+      R  K L       LP  +  VLKA TGK + RP  F S  G  A
Sbjct:  146 EIEVQLQEDDTLEREDEALVEMRLFFPPGHGELDSADKAAQDGAVTSAALASGRAEPLEGEDSASGTPAERVRARLISAAGIHGAV----------GEAAAEFPERVGAFLAPRGRYAVEVYPTFLRLVGKSNEFKVTHAKISRMFYLPRPGAAKDEDGNPLPDRFYFVISLQDPLRQGQQRYPHLVMNLTTDQFECRLNCTPERLRDLK-LPAVVSDALPMTIAKVLKAFTGKKLFRPQHFSSSAGHKA 384          
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Match: A0A5D6XJ40_9STRA (FACT complex subunit SSRP1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJ40_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.770e-24
Identity = 57/171 (33.33%), Postives = 95/171 (55.56%), Query Frame = 1
Query:  208 GADAIFSAESLHSAISAQTRSAAIGGKIIAEFDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVPNDSGRVMLIVSLEKPVYQGQHRFPHLIMALDSVSHTLDLS-AMDAADRAQKELEPRYKGMLPNVLTMVLKAMTGKSVLRPGSFKSQTGTSA 717
            G D + +AE     +  +    A+ GK I + D+S+ + L PRGR+ +E+YG+F+RM    FD+KI YS++ R F L +PN       ++SLE+P+ QG+  +PHL++ L      +D++ + D   +    +  R  G LP ++  + K + GK V   G FK+ +G  A
Sbjct:  172 GTDDVMTAELFRDEVLQRANIRAVAGKSIVDLDESMGTFLTPRGRYGVEIYGSFLRMHGKTFDYKIMYSNINRCFLLELPNGLNTAF-VISLEEPIRQGKQGYPHLVLQLSKEDVHIDVNLSPDEIKKYNGNIHERMSGALPQIVATLFKFIIGKKVYTSGKFKTHSGDRA 341          
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Match: A0A7J7P2A3_9MAGN (FACT complex subunit SSRP1 n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7P2A3_9MAGN)

HSP 1 Score: 109 bits (272), Expect = 1.110e-23
Identity = 56/143 (39.16%), Postives = 91/143 (63.64%), Query Frame = 1
Query:  280 GGKIIAEFDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVPNDSGRVMLIVSLEKPVYQGQHRFPHLIMALDS---VSHTLDLSAMDAADRAQKELEPRYKGMLPNVLTMVLKAMTGKSVLRPGSFKS 699
            G   +A FD    ++L PRGR+++EL+ TF+R+++A  D+KI YSSV RLF LP  N      ++V+L+ P+ +GQ  +PH+++  ++   +  TL LS    A + + +LE  YKG++  V TM+L+ ++G  V RPG F+S
Sbjct:  207 GAVAVAVFDG--IAILTPRGRYTVELHSTFLRLMAAANDFKIQYSSVVRLFLLPKSNQQ-HTFVVVTLDPPIRKGQTLYPHIVLQFETDYVIESTLTLSEDTLASKYKDKLEASYKGLIHEVFTMILRGLSGAKVTRPGKFRS 346          
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Match: A0A1V9YJM5_9STRA (FACT complex subunit SSRP1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YJM5_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.470e-23
Identity = 62/166 (37.35%), Postives = 95/166 (57.23%), Query Frame = 1
Query:  226 SAESLHSAISAQTRSAAIGGKIIAEFDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVPNDSGRVMLIVSLEKPVYQGQHRFPHLIMAL--DSVSHTLDLSAMDAADRAQKELEPRYKGMLPNVLTMVLKAMTGKSVLRPGSFKSQTGTSA 717
            SAES    + A+   + I GK I E D+S+ + L PRGR+++ELYG+F+RM    +D+KI YS++ R F L  PN S     ++SLE+P+ QG+  +PHL++ L  D V   ++L+A D        +  R  G LP ++  + K + GK V   G F + +G  A
Sbjct:  178 SAESFKDDVLARANISNITGKSIVELDESMGTFLTPRGRYAIELYGSFLRMHGKTYDYKIMYSNINRCFLLEYPN-STNTAFVISLEEPIRQGKQGYPHLVLQLARDEVHIDVNLTA-DEIKAYDGNIHERMSGALPQIVATLFKFIIGKKVYTSGKFVTHSGDRA 341          
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Match: A0A024TYY0_9STRA (FACT complex subunit SSRP1 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TYY0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.490e-23
Identity = 63/171 (36.84%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  211 ADAIFSAESLHSAISAQTRSAAIGGKIIAEFDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVPNDSGRVMLIVSLEKPVYQGQHRFPHLIMAL--DSVSHTLDLSAMDAADRAQKELEPRYKGMLPNVLTMVLKAMTGKSVLRPGSFKSQTGTSA 717
            AD   +AESL   I  +   + + GK I E D+S+ + L PRGR+++ELYG+F+RM    +D+KI YS++ R F L  PN S     ++SLE+P+ QG+  +PHL++ L  D V   ++LSA +   +    +  R  G LP ++  + K + GK V   G F + +G  A
Sbjct:  174 ADDGVTAESLKDEILERANISHVTGKSIVELDESMGTFLTPRGRYAVELYGSFLRMHGKTYDYKILYSNINRCFLLEYPN-STNTAFVISLEEPIRQGKQGYPHLVLQLARDEVHIDVNLSA-EEIKKYNGNIHERMSGSLPQIVATLFKFIMGKKVYTSGKFVTHSGDRA 342          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94032.21705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482UL41_9ARCH1.320e-3240.91Rtt106 domain-containing protein (Fragment) n=1 Ta... [more]
A0A836C825_9STRA7.750e-2931.11FACT complex subunit SSRP1 n=1 Tax=Tribonema minus... [more]
A0A024G5S3_9STRA3.050e-2831.25Rtt106 domain-containing protein n=1 Tax=Albugo ca... [more]
F0WCZ8_9STRA6.920e-2830.83FACT complex subunit SSRP1 n=1 Tax=Albugo laibachi... [more]
A0A812WXA1_9DINO5.710e-2631.60FACT complex subunit SSRP1 n=1 Tax=Symbiodinium sp... [more]
A0A5A8D8E2_CAFRO1.070e-2531.60FACT complex subunit SSRP1 n=3 Tax=Cafeteria roenb... [more]
A0A5D6XJ40_9STRA1.770e-2433.33FACT complex subunit SSRP1 n=1 Tax=Pythium brassic... [more]
A0A7J7P2A3_9MAGN1.110e-2339.16FACT complex subunit SSRP1 n=1 Tax=Kingdonia unifl... [more]
A0A1V9YJM5_9STRA1.470e-2337.35FACT complex subunit SSRP1 n=4 Tax=Saprolegniaceae... [more]
A0A024TYY0_9STRA1.490e-2336.84FACT complex subunit SSRP1 n=7 Tax=Aphanomyces Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94032contigM-pyrifera_M_contig94032:30..746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue1e-27
Seed eggNOG ortholog42099.EPrPV00000015988
Preferred namePOB3
KEGG koko:K09272
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000741,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005719,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0006997,GO:0007154,GO:0007275,GO:0008023,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009553,GO:0009559,GO:0009561,GO:0009605,GO:0009607,GO:0009791,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010197,GO:0010228,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022414,GO:0022607,GO:0030154,GO:0030447,GO:0030466,GO:0030702,GO:0031298,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031334,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034724,GO:0034728,GO:0035101,GO:0036170,GO:0036180,GO:0040007,GO:0040029,GO:0042393,GO:0042594,GO:0042802,GO:0042803,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043486,GO:0043596,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045893,GO:0045898,GO:0045899,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046983,GO:0048229,GO:0048284,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051716,GO:0060255,GO:0060260,GO:0060261,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070727,GO:0071103,GO:0071496,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990141,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2001141
EggNOG free text desc.FACT complex subunit SSRP1. Source PGD
EggNOG OGs1MBXV@121069,COG5165@1,KOG0526@2759
COG Functional cat.BKL
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size717
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.7254472-CDS-M-pyrifera_M_contig94032:29..7461622816853.7254472-CDS-M-pyrifera_M_contig94032:29..746Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94032 30..746 +
1692278217.35903-CDS-M-pyrifera_M_contig94032:29..7461692278217.35903-CDS-M-pyrifera_M_contig94032:29..746Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94032 30..746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94032.21705.1prot_M-pyrifera_M_contig94032.21705.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94032 30..746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94032.21705.1

>prot_M-pyrifera_M_contig94032.21705.1 ID=prot_M-pyrifera_M_contig94032.21705.1|Name=mRNA_M-pyrifera_M_contig94032.21705.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=239bp
KEEVELIFGEDDTVKRDDECLVQMRLFFPEGAAPPTKSGGGGEGEDGASS
SSSSSSSSSSSSSSSAGLVGADAIFSAESLHSAISAQTRSAAIGGKIIAE
FDDSLCSMLAPRGRFSLELYGTFMRMVSAKFDWKIAYSSVARLFHLPVPN
DSGRVMLIVSLEKPVYQGQHRFPHLIMALDSVSHTLDLSAMDAADRAQKE
LEPRYKGMLPNVLTMVLKAMTGKSVLRPGSFKSQTGTSA
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mRNA from alignment at M-pyrifera_M_contig94032:30..746+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94032.21705.1 ID=mRNA_M-pyrifera_M_contig94032.21705.1|Name=mRNA_M-pyrifera_M_contig94032.21705.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=717bp|location=Sequence derived from alignment at M-pyrifera_M_contig94032:30..746+ (Macrocystis pyrifera P11B4 male)
AAGGAAGAAGTCGAGCTCATCTTCGGAGAAGACGACACCGTGAAACGAGA CGACGAGTGCCTCGTGCAAATGCGACTCTTCTTCCCAGAAGGAGCAGCCC CACCAACGAAATCAGGCGGAGGAGGGGAAGGGGAGGATGGGGCATCGTCT TCTTCATCGTCATCTTCATCTTCTTCTTCTTCTTCGTCTTCTTCTGCTGG TTTGGTGGGTGCTGATGCGATTTTTTCTGCCGAGAGTTTGCACAGTGCGA TTTCTGCGCAGACAAGAAGTGCAGCGATTGGAGGGAAGATCATTGCCGAG TTTGACGATAGTCTGTGCAGTATGCTGGCGCCTCGTGGTCGCTTTTCTCT CGAGTTGTATGGCACCTTCATGCGAATGGTGAGCGCCAAGTTCGACTGGA AAATCGCTTACAGCTCCGTGGCGCGATTGTTCCACTTGCCTGTTCCCAAC GACAGTGGTCGAGTGATGCTGATCGTGTCTTTGGAGAAACCAGTGTACCA GGGACAGCACCGGTTTCCTCACTTGATCATGGCGCTGGATTCCGTTTCCC ACACTCTGGATTTGAGTGCTATGGACGCAGCTGATCGCGCCCAGAAGGAG CTGGAACCGAGGTACAAGGGCATGTTGCCCAACGTGCTCACGATGGTACT CAAGGCCATGACTGGGAAATCCGTGCTTCGACCAGGTTCCTTCAAGAGCC AAACTGGAACGAGTGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94032:30..746+

>mRNA_M-pyrifera_M_contig94032.21705.1 ID=mRNA_M-pyrifera_M_contig94032.21705.1|Name=mRNA_M-pyrifera_M_contig94032.21705.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1434bp|location=Sequence derived from alignment at M-pyrifera_M_contig94032:30..746+ (Macrocystis pyrifera P11B4 male)
AAGGAAGAAGTCGAGCTCATCTTCGGAGAAGACGACACCGTGAAACGAGA
CGACGAGTGCCTCGTGCAAATGCGACTCTTCTTCCCAGAAGGAGCAGCCC
CACCAACGAAATCAGGCGGAGGAGGGGAAGGGGAGGATGGGGCATCGTCT
TCTTCATCGTCATCTTCATCTTCTTCTTCTTCTTCGTCTTCTTCTGCTGG
TTTGGTGGGTGCTGATGCGATTTTTTCTGCCGAGAGTTTGCACAGTGCGA
TTTCTGCGCAGACAAGAAGTGCAGCGATTGGAGGGAAGATCATTGCCGAG
TTTGACGATAGTCTGTGCAGTATGCTGGCGCCTCGTGGTCGCTTTTCTCT
CGAGTTGTATGGCACCTTCATGCGAATGGTGAGCGCCAAGTTCGACTGGA
AAATCGCTTACAGCTCCGTGGCGCGATTGTTCCACTTGCCTGTTCCCAAC
GACAGTGGTCGAGTGATGCTGATCGTGTCTTTGGAGAAACCAGTGTACCA
GGGACAGCACCGGTTTCCTCACTTGATCATGGCGCTGGATTCCGTTTCCC
ACACTCTGGATTTGAGTGCTATGGACGCAGCTGATCGCGCCCAGAAGGAG
CTGGAACCGAGGTACAAGGGCATGTTGCCCAACGTGCTCACGATGGTACT
CAAGGCCATGACTGGGAAATCCGTGCTTCGACCAGGTTCCTTCAAGAGCC
AAACTGGAACGAGTGCAAAGGAAGAAGTCGAGCTCATCTTCGGAGAAGAC
GACACCGTGAAACGAGACGACGAGTGCCTCGTGCAAATGCGACTCTTCTT
CCCAGAAGGAGCAGCCCCACCAACGAAATCAGGCGGAGGAGGGGAAGGGG
AGGATGGGGCATCGTCTTCTTCATCGTCATCTTCATCTTCTTCTTCTTCT
TCGTCTTCTTCTGCTGGTTTGGTGGGTGCTGATGCGATTTTTTCTGCCGA
GAGTTTGCACAGTGCGATTTCTGCGCAGACAAGAAGTGCAGCGATTGGAG
GGAAGATCATTGCCGAGTTTGACGATAGTCTGTGCAGTATGCTGGCGCCT
CGTGGTCGCTTTTCTCTCGAGTTGTATGGCACCTTCATGCGAATGGTGAG
CGCCAAGTTCGACTGGAAAATCGCTTACAGCTCCGTGGCGCGATTGTTCC
ACTTGCCTGTTCCCAACGACAGTGGTCGAGTGATGCTGATCGTGTCTTTG
GAGAAACCAGTGTACCAGGGACAGCACCGGTTTCCTCACTTGATCATGGC
GCTGGATTCCGTTTCCCACACTCTGGATTTGAGTGCTATGGACGCAGCTG
ATCGCGCCCAGAAGGAGCTGGAACCGAGGTACAAGGGCATGTTGCCCAAC
GTGCTCACGATGGTACTCAAGGCCATGACTGGGAAATCCGTGCTTCGACC
AGGTTCCTTCAAGAGCCAAACTGGAACGAGTGCA
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