mRNA_M-pyrifera_M_contig94007.21701.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94007.21701.1
Unique NamemRNA_M-pyrifera_M_contig94007.21701.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Match: A0A7R9V8A7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V8A7_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 1.440e-27
Identity = 62/112 (55.36%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:   28 LEKGLGSTSGGAGTALELMGASGGGKRSIITFVRGLDKMLGGGVALGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVPSRLREVAVALEEHLKSM 363
            ++ G G  +G A +A  L  A    KR I+TF    D++LGGGVA GQ+TEF GVPG+GKTQ+ +QLAVDVQIP + GGVGG A+YIDTEGSF   R  +VA A   HL  M
Sbjct:   75 IDSGSGGGNGRAVSATALYEAQRRSKR-IVTFCADFDRVLGGGVAAGQVTEFCGVPGIGKTQLGMQLAVDVQIPAAFGGVGGKAVYIDTEGSFASDRAHDVASAAVRHLDRM 185
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BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Match: A0A7S3DLM5_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DLM5_9EUKA)

HSP 1 Score: 111 bits (278), Expect = 6.190e-27
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:  112 IITFVRGLDKMLGGGVALGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVPSRLREVAVALEEHLKSMV 366
            IITF +G+D MLGGGV+L ++TEF G+PG+GKTQ+ +QL  +VQIP   GGV G ALY+DTEGSF P R+ ++A+AL +HL  MV
Sbjct:  111 IITFCQGMDSMLGGGVSLREMTEFSGIPGIGKTQLAMQLCANVQIPAFFGGVEGEALYVDTEGSFTPERMNDIAIALHKHLLHMV 195
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BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Match: UPI0014551BA8 (DNA repair protein RAD51 homolog 3-like isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI0014551BA8)

HSP 1 Score: 111 bits (277), Expect = 1.220e-26
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:  109 SIITFVRGLDKMLGGGVALGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVPSRLREVAVALEEHLKSM 363
            +I+TF   LD+MLGGGV L ++TE  G PGVGKTQ C+QLAVDVQIP+  GGV G A+Y+DTEGSF+P R  ++AVA+ EH + +
Sbjct:  105 AIVTFCEDLDEMLGGGVPLSKITEICGAPGVGKTQTCIQLAVDVQIPQCFGGVEGEAIYVDTEGSFIPQRAADMAVAMVEHCRGI 189
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BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Match: A0A8B7XZR5_ACAPL (DNA repair protein RAD51 homolog 3-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XZR5_ACAPL)

HSP 1 Score: 110 bits (275), Expect = 2.570e-26
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:  109 SIITFVRGLDKMLGGGVALGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVPSRLREVAVALEEHLKSMV 366
            +I+TF   LD+MLGGGV L ++TE  G PGVGKTQ C+QLAVDVQIP+  GGV G A+YIDTEGSF+P R  ++A+A+ EH + +V
Sbjct:  106 AIVTFCEDLDEMLGGGVPLCKITELCGAPGVGKTQTCIQLAVDVQIPQCFGGVDGEAIYIDTEGSFLPQRAADMALAMVEHCRQIV 191
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BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Match: A0A5A8E3R9_CAFRO (RECA_2 domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3R9_CAFRO)

HSP 1 Score: 110 bits (275), Expect = 4.170e-26
Identity = 51/84 (60.71%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:  112 IITFVRGLDKMLGGGVALGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVPSRLREVAVALEEHLKSM 363
            I+TF RG+D +LGGG+  G++TE VGVPGVGKTQ+C QLAVD  +PK+ GGV G  LYIDTEGSF P R  ++A AL  H++ M
Sbjct:  107 IVTFCRGIDTLLGGGMPTGEVTEVVGVPGVGKTQLCTQLAVDASLPKAFGGVDGQTLYIDTEGSFTPDRCAQMADALSAHVRGM 190
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BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Match: A0A5J4Y699_9CHLO (DNA repair RAD51 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y699_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 5.940e-26
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:  106 RSIITFVRGLDKMLGGGVALGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVPSRLREVAVALEEHLKSM 363
            R IITF   LD MLGGGVA GQ+TEF GVP VGKTQ+ +QLA+DVQIP + GG+   A+YIDTEGSF+  R+ E+A A   HLK +
Sbjct:   52 RKIITFCGDLDGMLGGGVATGQITEFCGVPAVGKTQLGIQLAIDVQIPAAFGGLAASAVYIDTEGSFMVERIVEIADACIRHLKKL 137
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BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Match: A0A7S4M6D8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M6D8_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 8.090e-26
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:  133 LDKMLGGGVALGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVPSRLREVAVALEEHL 354
            +D+MLGGGV  G++TEF GVPGVGKTQ  LQLAVDV IP S+GG  G  +YIDTEGSFVP R+RE+A AL EHL
Sbjct:    2 IDEMLGGGVPRGKITEFCGVPGVGKTQFGLQLAVDVHIPMSMGGAQGRCIYIDTEGSFVPERVREMATALVEHL 75
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BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Match: A0A7L0DRJ3_TROML (RA51C protein (Fragment) n=1 Tax=Trogon melanurus TaxID=56311 RepID=A0A7L0DRJ3_TROML)

HSP 1 Score: 104 bits (259), Expect = 1.170e-25
Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = 1 
Query:   25 ELEKGLGSTSGGAG-----TALELMGASGGGKRSIITFVRGLDKMLGGGVALGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVPSRLREVAVALEEHLK 357
            E  +G   T+GG+G     TALEL+      +  IITF   LD +LGGGV L ++TE  G PGVGKTQ+C+QLAVDVQIP+  GGV G A++IDTEGSF+  R+ ++A A  +H +
Sbjct:   19 ECHRGAARTAGGSGATRKCTALELLEEEQA-QGFIITFCSALDTILGGGVQLTKITEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVADIAAACVQHCR 133
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BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Match: UPI00148A3B53 (DNA repair protein RAD51 homolog 3-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A3B53)

HSP 1 Score: 107 bits (267), Expect = 2.060e-25
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:  112 IITFVRGLDKMLGGGVALGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVPSRLREVAVALEEHLKSM 363
            IITF  GLD MLGGGV L ++TEF G PGVGKTQ+C+Q+AVDVQIP   GG+ G A+YIDTEGSF+  RL ++A A  +H   M
Sbjct:   90 IITFSEGLDNMLGGGVPLCKITEFCGAPGVGKTQMCMQIAVDVQIPSQFGGLQGEAVYIDTEGSFIVERLVDIAKATVDHCNEM 173
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BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Match: A0A6G1Q1D2_9TELE (DNA repair protein RAD51-like protein 3 n=1 Tax=Channa argus TaxID=215402 RepID=A0A6G1Q1D2_9TELE)

HSP 1 Score: 107 bits (266), Expect = 2.350e-25
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:  106 RSIITFVRGLDKMLGGGVALGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVPSRLREVAVALEEHLKSMV 366
            RSI+TF   LD +LGGG+ +G++TE  G PGVGKTQ+CLQLAVDVQ+P   GG+GG  +YIDTEGSF+  R+ +VA A+  H   +V
Sbjct:   85 RSIVTFCSQLDTVLGGGLPVGKITEVCGAPGVGKTQLCLQLAVDVQVPPCFGGIGGQVIYIDTEGSFLVQRVVDVATAVVRHCSQLV 171
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94007.21701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9V8A7_9CHLO1.440e-2755.36Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S3DLM5_9EUKA6.190e-2760.00Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
UPI0014551BA81.220e-2660.00DNA repair protein RAD51 homolog 3-like isoform X1... [more]
A0A8B7XZR5_ACAPL2.570e-2660.47DNA repair protein RAD51 homolog 3-like isoform X1... [more]
A0A5A8E3R9_CAFRO4.170e-2660.71RECA_2 domain-containing protein n=5 Tax=Cafeteria... [more]
A0A5J4Y699_9CHLO5.940e-2661.63DNA repair RAD51 n=1 Tax=Trebouxia sp. A1-2 TaxID=... [more]
A0A7S4M6D8_9EUKA8.090e-2670.27Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7L0DRJ3_TROML1.170e-2550.86RA51C protein (Fragment) n=1 Tax=Trogon melanurus ... [more]
UPI00148A3B532.060e-2561.90DNA repair protein RAD51 homolog 3-like n=1 Tax=Cr... [more]
A0A6G1Q1D2_9TELE2.350e-2557.47DNA repair protein RAD51-like protein 3 n=1 Tax=Ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94007contigM-pyrifera_M_contig94007:382..747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog529818.AMSG_02375T0
Preferred nameRAD51C
KEGG rclassRC00032,RC00226,RC00571,RC01560
KEGG koko:K00615,ko:K10870
KEGG ReactionR01067,R01641,R01830,R06590
KEGG Pathwayko00030,ko00710,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03440,ko03460,map00030,map00710,map01051,map01100,map01110,map01120,map01130,map01200,map01230,map03440,map03460
KEGG ModuleM00004,M00007,M00165,M00167
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000226,GO:0000280,GO:0000400,GO:0000707,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000819,GO:0001709,GO:0002064,GO:0002065,GO:0002066,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007062,GO:0007066,GO:0007127,GO:0007131,GO:0007135,GO:0007140,GO:0007141,GO:0007143,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007293,GO:0007294,GO:0007304,GO:0007306,GO:0007346,GO:0007389,GO:0007596,GO:0007599,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0008821,GO:0009314,GO:0009611,GO:0009628,GO:0009653,GO:0009798,GO:0009888,GO:0009948,GO:0009949,GO:0009950,GO:0009951,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010212,GO:0010389,GO:0010564,GO:0010927,GO:0010971,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0016889,GO:0016894,GO:0017111,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030054,GO:0030154,GO:0030703,GO:0030706,GO:0030707,GO:0030716,GO:0030717,GO:0030720,GO:0030855,GO:0031023,GO:0031974,GO:0031981,GO:0032200,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0033036,GO:0033061,GO:0033063,GO:0033065,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0042060,GO:0042148,GO:0042592,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045132,GO:0045144,GO:0045165,GO:0045787,GO:0045931,GO:0046483,GO:0046843,GO:0048232,GO:0048285,GO:0048468,GO:0048471,GO:0048476,GO:0048477,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051177,GO:0051179,GO:0051276,GO:0051321,GO:0051641,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0060249,GO:0060429,GO:0061982,GO:0061983,GO:0061988,GO:0065001,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070727,GO:0071704,GO:0071824,GO:0071840,GO:0090068,GO:0090304,GO:0090305,GO:0090735,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1903046
EggNOG free text desc.strand invasion
EggNOG OGsCOG0468@1,KOG1434@2759
EC2.2.1.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Exons1
Model size366
Cds size354
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.572813-UTR-M-pyrifera_M_contig94007:381..3931622816853.572813-UTR-M-pyrifera_M_contig94007:381..393Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94007 382..393 +
1692278217.2803895-UTR-M-pyrifera_M_contig94007:381..3931692278217.2803895-UTR-M-pyrifera_M_contig94007:381..393Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig94007 382..393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.5831506-CDS-M-pyrifera_M_contig94007:393..7471622816853.5831506-CDS-M-pyrifera_M_contig94007:393..747Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94007 394..747 +
1692278217.2933848-CDS-M-pyrifera_M_contig94007:393..7471692278217.2933848-CDS-M-pyrifera_M_contig94007:393..747Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94007 394..747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94007.21701.1prot_M-pyrifera_M_contig94007.21701.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94007 394..747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94007.21701.1

>prot_M-pyrifera_M_contig94007.21701.1 ID=prot_M-pyrifera_M_contig94007.21701.1|Name=mRNA_M-pyrifera_M_contig94007.21701.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MTVGELEKGLGSTSGGAGTALELMGASGGGKRSIITFVRGLDKMLGGGVA
LGQLTEFVGVPGVGKTQVCLQLAVDVQIPKSLGGVGGCALYIDTEGSFVP
SRLREVAVALEEHLKSMV
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mRNA from alignment at M-pyrifera_M_contig94007:382..747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94007.21701.1 ID=mRNA_M-pyrifera_M_contig94007.21701.1|Name=mRNA_M-pyrifera_M_contig94007.21701.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig94007:382..747+ (Macrocystis pyrifera P11B4 male)
TTGCGCGGAGGGATGACTGTTGGGGAGTTGGAAAAGGGATTAGGAAGTAC
AAGTGGTGGAGCTGGTACTGCATTGGAATTGATGGGTGCCTCAGGAGGAG
GGAAGAGGAGCATTATTACCTTTGTTCGAGGATTGGACAAAATGTTGGGT
GGTGGTGTTGCGTTGGGGCAATTGACAGAATTTGTAGGTGTGCCTGGTGT
AGGAAAAACACAAGTTTGTTTACAACTCGCCGTGGATGTGCAAATTCCAA
AGTCATTAGGTGGAGTTGGTGGTTGTGCATTATATATTGATACTGAAGGC
TCCTTTGTACCATCTCGCTTGCGTGAAGTAGCAGTTGCATTGGAAGAGCA
CTTGAAATCCATGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94007:382..747+

>mRNA_M-pyrifera_M_contig94007.21701.1 ID=mRNA_M-pyrifera_M_contig94007.21701.1|Name=mRNA_M-pyrifera_M_contig94007.21701.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig94007:382..747+ (Macrocystis pyrifera P11B4 male)
ATGACTGTTGGGGAGTTGGAAAAGGGATTAGGAAGTACAAGTGGTGGAGC
TGGTACTGCATTGGAATTGATGGGTGCCTCAGGAGGAGGGAAGAGGAGCA
TTATTACCTTTGTTCGAGGATTGGACAAAATGTTGGGTGGTGGTGTTGCG
TTGGGGCAATTGACAGAATTTGTAGGTGTGCCTGGTGTAGGAAAAACACA
AGTTTGTTTACAACTCGCCGTGGATGTGCAAATTCCAAAGTCATTAGGTG
GAGTTGGTGGTTGTGCATTATATATTGATACTGAAGGCTCCTTTGTACCA
TCTCGCTTGCGTGAAGTAGCAGTTGCATTGGAAGAGCACTTGAAATCCAT
GGTGATGACTGTTGGGGAGTTGGAAAAGGGATTAGGAAGTACAAGTGGTG
GAGCTGGTACTGCATTGGAATTGATGGGTGCCTCAGGAGGAGGGAAGAGG
AGCATTATTACCTTTGTTCGAGGATTGGACAAAATGTTGGGTGGTGGTGT
TGCGTTGGGGCAATTGACAGAATTTGTAGGTGTGCCTGGTGTAGGAAAAA
CACAAGTTTGTTTACAACTCGCCGTGGATGTGCAAATTCCAAAGTCATTA
GGTGGAGTTGGTGGTTGTGCATTATATATTGATACTGAAGGCTCCTTTGT
ACCATCTCGCTTGCGTGAAGTAGCAGTTGCATTGGAAGAGCACTTGAAAT
CCATGGTG
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