mRNA_M-pyrifera_M_contig94003.21700.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig94003.21700.1
Unique NamemRNA_M-pyrifera_M_contig94003.21700.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig94003.21700.1 vs. uniprot
Match: A0A6H5KW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW72_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.110e-8
Identity = 37/95 (38.95%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:    1 VPVLHRESFRRGGLKSGTLVRYRGLVQGMFSPELMAVAGEE----EGSRNLRATKFQDAV---PRGVSVSSDRSDLMANRITLYLVPPPGESQWA 264
            VP+L RES  +G L + +LVRYRG+VQ  + PE    + EE     G RN    K+ D++   P  V+          +R+ L+ VP PG+SQWA
Sbjct:   64 VPILSRESLAKGKLAANSLVRYRGMVQDQYEPEYFVGSFEELETATGKRNRVDVKYVDSIAQRPGFVNEYDGPGAKTMDRLPLFCVPIPGQSQWA 158
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BLAST of mRNA_M-pyrifera_M_contig94003.21700.1 vs. uniprot
Match: A0A3S1AWI1_ELYCH (Mini-chromosome maintenance complex-binding protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1AWI1_ELYCH)

HSP 1 Score: 57.8 bits (138), Expect = 3.180e-6
Identity = 54/209 (25.84%), Postives = 79/209 (37.80%), Query Frame = 1 
Query:   40 LKSGTLVRYRGLVQGMFSPELMA----VAGEEEGSRNLRATKFQDAVPRGVSVSSDRSDLMA---NRITLYLVPPPGESQWAKECGDYTTWKKARPKPKDSTESARMRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVKRXXXXXXXXXXXXXXXXXXXXSGKGVVASTATVPGLDAYFPLPGESGVPALVRLY----DVEGISPIHV 633
            L SGT+V+YR +VQ +F P+       V     G   L    F+D    G + ++D   L +    R ++Y VP PGE+ W KE  D       R  P  ST +AR +R                            D                       SG     ++  +P L+   PLP E GVP +VR+Y    D++  S + +
Sbjct:   61 LSSGTVVKYRCMVQDVFDPQYFVGRYKVTNSGSGQTRLECGSFRDVPLIGPNETADFDSLQSVTVERHSVYCVPIPGEANWVKEINDKQC---RRMTPSTSTSAAREKRGRDHEGEEEMESDHKVTREERSTVGPGGDPSHDKPTEGLDDQMSGVQ-----SGGPAPKTSPKLPSLN--MPLPNEQGVPCIVRVYSGNVDLKATSVVEI 259
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BLAST of mRNA_M-pyrifera_M_contig94003.21700.1 vs. uniprot
Match: A0A7S2W7Z4_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W7Z4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.200e-6
Identity = 30/94 (31.91%), Postives = 51/94 (54.26%), Query Frame = 1 
Query:    1 VPVLHRESFRRGGLKSGTLVRYRGLVQGMFSPEL---MAVAGEEEGSRNLRATKFQDA-VPRGVSVSSDRSDLMANRITLYLVPPPGESQWAKE 270
            +P L +   + G L SGTLVRYR +VQ +F PE    +    + +G+     +++QD  +P+G +    + + +  R+  Y V  PGES W ++
Sbjct:   55 IPWLTKAGIQSGKLSSGTLVRYRAMVQDIFDPEYFDGVLNVMQADGTLKKVTSRYQDVFIPKGDAKVVAQGEHLMERVPYYCVSVPGESDWCRK 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig94003.21700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KW72_9PHAE1.110e-838.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3S1AWI1_ELYCH3.180e-625.84Mini-chromosome maintenance complex-binding protei... [more]
A0A7S2W7Z4_9STRA3.200e-631.91Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig94003contigM-pyrifera_M_contig94003:2..652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.0
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog8081.XP_008428246.1
Preferred nameMCMBP
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0022402,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0098813,GO:1901360,GO:1901576
EggNOG free text desc.Minichromosome maintenance complex binding protein
EggNOG OGs38EPW@33154,3BFTN@33208,3CWSA@33213,4892E@7711,48YW0@7742,49XNN@7898,KOG2545@1,KOG2545@2759
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons1
Model size651
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.542367-CDS-M-pyrifera_M_contig94003:1..6521622816853.542367-CDS-M-pyrifera_M_contig94003:1..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94003 2..652 -
1692278217.267519-CDS-M-pyrifera_M_contig94003:1..6521692278217.267519-CDS-M-pyrifera_M_contig94003:1..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig94003 2..652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig94003.21700.1prot_M-pyrifera_M_contig94003.21700.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig94003 2..652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig94003.21700.1

>prot_M-pyrifera_M_contig94003.21700.1 ID=prot_M-pyrifera_M_contig94003.21700.1|Name=mRNA_M-pyrifera_M_contig94003.21700.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=217bp
VPVLHRESFRRGGLKSGTLVRYRGLVQGMFSPELMAVAGEEEGSRNLRAT
KFQDAVPRGVSVSSDRSDLMANRITLYLVPPPGESQWAKECGDYTTWKKA
RPKPKDSTESARMRRKRRLEEPEEKKEEDGGVVGERSDDVVERDVKRAKE
EAVGVGGEEEEEEEEEESGKGVVASTATVPGLDAYFPLPGESGVPALVRL
YDVEGISPIHVGDLVEI
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mRNA from alignment at M-pyrifera_M_contig94003:2..652-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig94003.21700.1 ID=mRNA_M-pyrifera_M_contig94003.21700.1|Name=mRNA_M-pyrifera_M_contig94003.21700.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=651bp|location=Sequence derived from alignment at M-pyrifera_M_contig94003:2..652- (Macrocystis pyrifera P11B4 male)
GTTCCGGTATTGCATCGTGAATCCTTCCGTCGAGGTGGACTAAAATCAGG
TACATTGGTGCGATATCGTGGTTTGGTCCAAGGAATGTTTTCTCCTGAGC
TGATGGCAGTGGCTGGAGAGGAAGAAGGGAGTCGTAATTTGCGTGCTACG
AAGTTCCAAGATGCTGTGCCACGTGGAGTGTCCGTGTCATCGGATCGTTC
TGATTTAATGGCGAATCGAATCACTCTTTATCTCGTTCCTCCACCAGGAG
AAAGCCAATGGGCCAAAGAATGCGGCGACTATACTACGTGGAAGAAAGCT
CGTCCCAAGCCCAAGGACAGCACTGAAAGTGCACGCATGCGCCGCAAACG
ACGTCTGGAAGAACCCGAGGAGAAAAAAGAGGAAGATGGCGGGGTTGTGG
GAGAGCGGAGTGATGATGTGGTTGAACGAGATGTGAAGCGTGCGAAAGAG
GAAGCAGTTGGAGTTGGTGGGGAGGAGGAAGAGGAGGAAGAGGAGGAAGA
AAGTGGGAAAGGAGTGGTGGCATCAACAGCGACTGTTCCAGGCTTGGATG
CGTATTTCCCTCTTCCAGGAGAGAGTGGAGTTCCTGCACTTGTGCGTCTG
TATGACGTGGAAGGCATTTCCCCAATCCATGTGGGTGATTTGGTGGAAAT
T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig94003:2..652-

>mRNA_M-pyrifera_M_contig94003.21700.1 ID=mRNA_M-pyrifera_M_contig94003.21700.1|Name=mRNA_M-pyrifera_M_contig94003.21700.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig94003:2..652- (Macrocystis pyrifera P11B4 male)
GTTCCGGTATTGCATCGTGAATCCTTCCGTCGAGGTGGACTAAAATCAGG
TACATTGGTGCGATATCGTGGTTTGGTCCAAGGAATGTTTTCTCCTGAGC
TGATGGCAGTGGCTGGAGAGGAAGAAGGGAGTCGTAATTTGCGTGCTACG
AAGTTCCAAGATGCTGTGCCACGTGGAGTGTCCGTGTCATCGGATCGTTC
TGATTTAATGGCGAATCGAATCACTCTTTATCTCGTTCCTCCACCAGGAG
AAAGCCAATGGGCCAAAGAATGCGGCGACTATACTACGTGGAAGAAAGCT
CGTCCCAAGCCCAAGGACAGCACTGAAAGTGCACGCATGCGCCGCAAACG
ACGTCTGGAAGAACCCGAGGAGAAAAAAGAGGAAGATGGCGGGGTTGTGG
GAGAGCGGAGTGATGATGTGGTTGAACGAGATGTGAAGCGTGCGAAAGAG
GAAGCAGTTGGAGTTGGTGGGGAGGAGGAAGAGGAGGAAGAGGAGGAAGA
AAGTGGGAAAGGAGTGGTGGCATCAACAGCGACTGTTCCAGGCTTGGATG
CGTATTTCCCTCTTCCAGGAGAGAGTGGAGTTCCTGCACTTGTGCGTCTG
TATGACGTGGAAGGCATTTCCCCAATCCATGTGGGTGATTTGGTGGAAAT
TGTTCCGGTATTGCATCGTGAATCCTTCCGTCGAGGTGGACTAAAATCAG
GTACATTGGTGCGATATCGTGGTTTGGTCCAAGGAATGTTTTCTCCTGAG
CTGATGGCAGTGGCTGGAGAGGAAGAAGGGAGTCGTAATTTGCGTGCTAC
GAAGTTCCAAGATGCTGTGCCACGTGGAGTGTCCGTGTCATCGGATCGTT
CTGATTTAATGGCGAATCGAATCACTCTTTATCTCGTTCCTCCACCAGGA
GAAAGCCAATGGGCCAAAGAATGCGGCGACTATACTACGTGGAAGAAAGC
TCGTCCCAAGCCCAAGGACAGCACTGAAAGTGCACGCATGCGCCGCAAAC
GACGTCTGGAAGAACCCGAGGAGAAAAAAGAGGAAGATGGCGGGGTTGTG
GGAGAGCGGAGTGATGATGTGGTTGAACGAGATGTGAAGCGTGCGAAAGA
GGAAGCAGTTGGAGTTGGTGGGGAGGAGGAAGAGGAGGAAGAGGAGGAAG
AAAGTGGGAAAGGAGTGGTGGCATCAACAGCGACTGTTCCAGGCTTGGAT
GCGTATTTCCCTCTTCCAGGAGAGAGTGGAGTTCCTGCACTTGTGCGTCT
GTATGACGTGGAAGGCATTTCCCCAATCCATGTGGGTGATTTGGTGGAAA
TT
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