mRNA_M-pyrifera_M_contig93992.21693.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93992.21693.1
Unique NamemRNA_M-pyrifera_M_contig93992.21693.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Match: A0A8B8Q0P5_9MYRT (50S ribosomal protein L3-2, mitochondrial isoform X2 n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8Q0P5_9MYRT)

HSP 1 Score: 77.0 bits (188), Expect = 2.700e-15
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    4 EALTAEWTPFSKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQVKTRAHDGVDALQVGCSTPKLKRVAKP 228
            EA++    P SKRTG++A+KCGM  ++D  G RVP+SVL VD   V QVKT   +G+ ALQ+GC   K K + KP
Sbjct:   47 EAVSGVMGPASKRTGIIAVKCGMTAQWDKWGARVPLSVLWVDDNIVCQVKTVEKEGIFALQIGCGQKKEKHLTKP 121          
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Match: A0A2P6QZP0_ROSCH (Putative ribosomal protein L3 n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6QZP0_ROSCH)

HSP 1 Score: 77.8 bits (190), Expect = 2.890e-15
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    4 EALTAEWTPFSKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQVKTRAHDGVDALQVGCSTPKLKRVAKP 228
            EA     TP SKRTG++A+KCGM   +D  G RVP++VL VD   V QVKT   +G+ ALQ+GC   K K + KP
Sbjct:   68 EARPGVMTPQSKRTGVIAVKCGMSARWDKWGARVPITVLWVDDNIVSQVKTPEKEGISALQIGCGQKKAKHLTKP 142          
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Match: A0A8J9S0H0_9CHLO (50S ribosomal protein L3 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S0H0_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 5.340e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   25 TPFSKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQVKTRAHDGVDALQVGCSTPKLKRVAK 225
            TP ++R G+LA+K GM  E+D  G RVP++VL +D CQVVQVKT A +G  ALQVGC + + K+V K
Sbjct:   11 TPETRRCGVLAVKAGMTQEWDQWGARVPLTVLWIDNCQVVQVKTPAREGYLALQVGCGSKRPKQVNK 77          
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Match: A0A176VR44_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VR44_MARPO)

HSP 1 Score: 77.0 bits (188), Expect = 6.930e-15
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    4 EALTAEWTPFSKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQVKTRAHDGVDALQVGCSTPKLKRVAKP 228
            EA     +P S+RTG++A+KCGM   +D  G+RVPV+VL VD  QVVQVKT+  +G +ALQ+G    K K++ KP
Sbjct:  103 EAKPKLMSPESRRTGVVAVKCGMTAVWDRWGSRVPVTVLWVDDNQVVQVKTKGKEGHNALQIGAGQKKAKQLTKP 177          
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Match: UPI001C7B8ABD (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7B8ABD)

HSP 1 Score: 75.1 bits (183), Expect = 8.820e-15
Identity = 37/75 (49.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    4 EALTAEWTPFSKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQVKTRAHDGVDALQVGCSTPKLKRVAKP 228
            E +    TP SKRTG++A+KCGM   +D  G RVP++VL VD   V QVKT   +G+ ALQ+GC   K K + KP
Sbjct:   50 ENILRAMTPNSKRTGVIAVKCGMTALWDKWGARVPITVLWVDDNIVSQVKTVEKEGITALQIGCGQKKAKHLTKP 124          
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Match: D8RAR7_SELML (Uncharacterized protein (Fragment) n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RAR7_SELML)

HSP 1 Score: 75.5 bits (184), Expect = 9.780e-15
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   34 SKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQVKTRAHDGVDALQVGCSTPKLKRVAKP 228
            S+RTGL+A+KCGM   +D  G R+P++VL  D  QVVQVKT  H+G +ALQVGC   K K+++ P
Sbjct:    5 SRRTGLIAVKCGMTAVWDKWGRRIPITVLWADDNQVVQVKTVDHEGFNALQVGCGQKKPKQLSIP 69          
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Match: A0A087HAC9_ARAAL (Uncharacterized protein n=2 Tax=Arabis TaxID=50451 RepID=A0A087HAC9_ARAAL)

HSP 1 Score: 76.3 bits (186), Expect = 1.020e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    4 EALTAEWTPFSKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQVKTRAHDGVDALQVGCSTPKLKRVAKP 228
            EA   E +P SKRTG++A+KCGM   +D  G RVP+S+L VD   V QVKT   +G+ ALQ+GC   K K + KP
Sbjct:   63 EAKQGEMSPRSKRTGIIAVKCGMTALWDKWGARVPISILWVDDNIVSQVKTIEKEGIFALQIGCGHKKPKHLTKP 137          
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Match: A0A2N9EID6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EID6_FAGSY)

HSP 1 Score: 76.6 bits (187), Expect = 1.030e-14
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   25 TPFSKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQVKTRAHDGVDALQVGCSTPKLKRVAKP 228
            TP SKRTGL+A+KCGM   +D  G RVP++VL VD   V QVKT   +G+ ALQ+GC   K K + KP
Sbjct:   73 TPKSKRTGLIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTPEKEGISALQIGCGQKKAKHLTKP 140          
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Match: A0A6A1VLD7_9ROSI (50S ribosomal protein L3-2, chloroplastic n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VLD7_9ROSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.040e-14
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    4 EALTAEWTPFSKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQVKTRAHDGVDALQVGCSTPKLKRVAKP 228
            + L+   TP SKRTGL+A+KCGM   +D  G R+P+S+L VD   V QVKT   +G+ ALQ+GC   K K + KP
Sbjct:   65 QKLSRVMTPNSKRTGLIAVKCGMSALWDKWGARIPISILWVDDNIVSQVKTIDKEGITALQIGCGQKKAKHLTKP 139          
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Match: A0A2I0IH49_PUNGR (Uncharacterized protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IH49_PUNGR)

HSP 1 Score: 74.7 bits (182), Expect = 1.160e-14
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   25 TPFSKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQVKTRAHDGVDALQVGCSTPKLKRVAKP 228
            TP SKRTGL+A+KCGM   +D  G R+P+S+L VD   V QVKT   +G+ ALQ+GC   K K + KP
Sbjct:    2 TPNSKRTGLIAVKCGMTALWDKWGARIPISILWVDDNIVSQVKTVEKEGIFALQIGCGQKKEKHLTKP 69          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93992.21693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B8Q0P5_9MYRT2.700e-1550.6750S ribosomal protein L3-2, mitochondrial isoform ... [more]
A0A2P6QZP0_ROSCH2.890e-1550.67Putative ribosomal protein L3 n=2 Tax=Rosoideae Ta... [more]
A0A8J9S0H0_9CHLO5.340e-1555.2250S ribosomal protein L3 n=1 Tax=Coccomyxa sp. Obi... [more]
A0A176VR44_MARPO6.930e-1550.67Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
UPI001C7B8ABD8.820e-1549.33Uncharacterized protein n=2 Tax=Carya illinoinensi... [more]
D8RAR7_SELML9.780e-1553.85Uncharacterized protein (Fragment) n=4 Tax=Selagin... [more]
A0A087HAC9_ARAAL1.020e-1450.67Uncharacterized protein n=2 Tax=Arabis TaxID=50451... [more]
A0A2N9EID6_FAGSY1.030e-1454.41Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6A1VLD7_9ROSI1.040e-1449.3350S ribosomal protein L3-2, chloroplastic n=1 Tax=... [more]
A0A2I0IH49_PUNGR1.160e-1452.94Uncharacterized protein n=1 Tax=Punica granatum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93992contigM-pyrifera_M_contig93992:518..745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue3.2e-12
Seed eggNOG ortholog4792.ETI53956
KEGG koko:K02906
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribosomal protein L3
EggNOG OGs3Q8Z3@4776,COG0087@1,KOG3141@2759
COG Functional cat.J
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816853.0575957-CDS-M-pyrifera_M_contig93992:517..7451622816853.0575957-CDS-M-pyrifera_M_contig93992:517..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93992 518..745 +
1692278216.910074-CDS-M-pyrifera_M_contig93992:517..7451692278216.910074-CDS-M-pyrifera_M_contig93992:517..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93992 518..745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93992.21693.1prot_M-pyrifera_M_contig93992.21693.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93992 518..745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93992.21693.1

>prot_M-pyrifera_M_contig93992.21693.1 ID=prot_M-pyrifera_M_contig93992.21693.1|Name=mRNA_M-pyrifera_M_contig93992.21693.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
SEALTAEWTPFSKRTGLLAIKCGMRTEYDAHGNRVPVSVLQVDQCQVVQV
KTRAHDGVDALQVGCSTPKLKRVAKP
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mRNA from alignment at M-pyrifera_M_contig93992:518..745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93992.21693.1 ID=mRNA_M-pyrifera_M_contig93992.21693.1|Name=mRNA_M-pyrifera_M_contig93992.21693.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig93992:518..745+ (Macrocystis pyrifera P11B4 male)
TCCGAGGCGCTGACTGCCGAGTGGACGCCGTTCTCCAAGCGCACCGGGCT GCTGGCGATCAAGTGCGGCATGCGGACAGAGTACGACGCGCACGGGAACC GGGTTCCGGTGAGCGTGCTGCAGGTGGACCAGTGCCAAGTGGTGCAGGTG AAGACGCGGGCGCACGACGGCGTGGACGCGCTGCAGGTGGGCTGTTCCAC GCCCAAGCTGAAGCGCGTGGCCAAGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93992:518..745+

>mRNA_M-pyrifera_M_contig93992.21693.1 ID=mRNA_M-pyrifera_M_contig93992.21693.1|Name=mRNA_M-pyrifera_M_contig93992.21693.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig93992:518..745+ (Macrocystis pyrifera P11B4 male)
TCCGAGGCGCTGACTGCCGAGTGGACGCCGTTCTCCAAGCGCACCGGGCT
GCTGGCGATCAAGTGCGGCATGCGGACAGAGTACGACGCGCACGGGAACC
GGGTTCCGGTGAGCGTGCTGCAGGTGGACCAGTGCCAAGTGGTGCAGGTG
AAGACGCGGGCGCACGACGGCGTGGACGCGCTGCAGGTGGGCTGTTCCAC
GCCCAAGCTGAAGCGCGTGGCCAAGCCGTCCGAGGCGCTGACTGCCGAGT
GGACGCCGTTCTCCAAGCGCACCGGGCTGCTGGCGATCAAGTGCGGCATG
CGGACAGAGTACGACGCGCACGGGAACCGGGTTCCGGTGAGCGTGCTGCA
GGTGGACCAGTGCCAAGTGGTGCAGGTGAAGACGCGGGCGCACGACGGCG
TGGACGCGCTGCAGGTGGGCTGTTCCACGCCCAAGCTGAAGCGCGTGGCC
AAGCCG
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