mRNA_M-pyrifera_M_contig93944.21686.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93944.21686.1
Unique NamemRNA_M-pyrifera_M_contig93944.21686.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Match: UPI001CC36E8E (nucleotidyltransferase domain-containing protein n=1 Tax=Arachnia rubra TaxID=1547448 RepID=UPI001CC36E8E)

HSP 1 Score: 58.9 bits (141), Expect = 4.660e-9
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   10 ASVAGRISALLGSMESEHGVRVLWCVESGSRAWGMESPDS 129
            A+  GRI A L  +E EHGVRV+W VESGSRAWG  SPDS
Sbjct:   24 AATVGRIQARLDEVELEHGVRVVWAVESGSRAWGFPSPDS 63          
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Match: A0A6J4FBY5_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum sp. UT-4 TaxID=2681467 RepID=A0A6J4FBY5_9PROT)

HSP 1 Score: 56.2 bits (134), Expect = 4.060e-8
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 1
Query:   16 VAGRISALLGSMESEHGVRVLWCVESGSRAWGMESPDS 129
            V GR+ A+L  +E EHG+R+L+ VESGSRAWG  SPDS
Sbjct:    9 VRGRVGAILDRVEREHGIRILFAVESGSRAWGFASPDS 46          
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Match: A0A3N4CW17_9ACTN (Nucleotidyltransferase domain-containing protein n=4 Tax=Arachnia TaxID=2801844 RepID=A0A3N4CW17_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 4.100e-8
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:   10 ASVAGRISALLGSMESEHGVRVLWCVESGSRAWGMESPDS 129
            A+   RI A L  +E +HGVRVLW VESGSRAWG  SPDS
Sbjct:   11 AATVERIQARLDEVERDHGVRVLWAVESGSRAWGFPSPDS 50          
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Match: A0A0Q7KJG0_9ACTN (Nucleotidyltransferase n=3 Tax=Aeromicrobium TaxID=2040 RepID=A0A0Q7KJG0_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 5.650e-8
Identity = 25/40 (62.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:   10 ASVAGRISALLGSMESEHGVRVLWCVESGSRAWGMESPDS 129
            ASV   I A L  +ES+HGVR+ W +ESGSRAWG  SPDS
Sbjct:   10 ASVVTEIGARLAGVESDHGVRIPWAIESGSRAWGFPSPDS 49          
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Match: A0A4Q5QNT8_9BACT (Uncharacterized protein n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=A0A4Q5QNT8_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 7.610e-8
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1
Query:   25 RISALLGSMESEHGVRVLWCVESGSRAWGMESPDS 129
            RIS  L ++E+EHG+R+L+  ESGSRAWG  SPDS
Sbjct:    4 RISRALAALEAEHGIRILYACESGSRAWGFPSPDS 38          
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Match: UPI000F76999B (nucleotidyltransferase domain-containing protein n=1 Tax=Antribacter gilvus TaxID=2304675 RepID=UPI000F76999B)

HSP 1 Score: 53.9 bits (128), Expect = 2.820e-7
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   13 SVAGRISALLGSMESEHGVRVLWCVESGSRAWGMESPDS 129
            +V   I   L  +ES+HGVRVLW +ESGSRAWG  SPDS
Sbjct:   11 AVVAAIDDRLDRVESDHGVRVLWAIESGSRAWGFPSPDS 49          
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Match: A0A3P1TAC4_9ACTN (Nucleotidyltransferase domain-containing protein n=1 Tax=Arachnia propionica TaxID=1750 RepID=A0A3P1TAC4_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 3.850e-7
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query:   13 SVAGRISALLGSMESEHGVRVLWCVESGSRAWGMESPDS 129
            +V  +I A L  +E+EHGV V+W VESGSRAWG  SPDS
Sbjct:   12 AVVQQIQARLDEVETEHGVAVVWAVESGSRAWGFPSPDS 50          
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Match: A0A3P1WTK0_9ACTN (Nucleotidyltransferase domain-containing protein n=1 Tax=Arachnia propionica TaxID=1750 RepID=A0A3P1WTK0_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 5.310e-7
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   13 SVAGRISALLGSMESEHGVRVLWCVESGSRAWGMESPDS 129
            +V  +I   L  +E+EHGV VLW VESGSRAWG  SPDS
Sbjct:   12 TVVQQIQTRLDGVETEHGVAVLWAVESGSRAWGFPSPDS 50          
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Match: A0A4R9DW28_9STRE (Nucleotidyltransferase domain-containing protein n=2 Tax=Streptococcus TaxID=1301 RepID=A0A4R9DW28_9STRE)

HSP 1 Score: 53.1 bits (126), Expect = 5.350e-7
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:   40 LGSMESEHGVRVLWCVESGSRAWGMESPDS 129
            L  +E EHG+ VLW VESGSRAWG ESPDS
Sbjct:   15 LREIEEEHGIEVLWAVESGSRAWGFESPDS 44          
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Match: A0A0C5XC65_NOCSI (Nucleotidyltransferase n=1 Tax=Nocardioides simplex TaxID=2045 RepID=A0A0C5XC65_NOCSI)

HSP 1 Score: 52.8 bits (125), Expect = 7.290e-7
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
Query:   13 SVAGRISALLGSMESEHGVRVLWCVESGSRAWGMESPDS 129
            S    + A L  + +EHGVRV+W +ESGSRAWG  SPDS
Sbjct:   11 SAVAAVDARLAGVAAEHGVRVVWAIESGSRAWGFPSPDS 49          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93944.21686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CC36E8E4.660e-967.50nucleotidyltransferase domain-containing protein n... [more]
A0A6J4FBY5_9PROT4.060e-863.16Uncharacterized protein n=1 Tax=Magnetospirillum s... [more]
A0A3N4CW17_9ACTN4.100e-865.00Nucleotidyltransferase domain-containing protein n... [more]
A0A0Q7KJG0_9ACTN5.650e-862.50Nucleotidyltransferase n=3 Tax=Aeromicrobium TaxID... [more]
A0A4Q5QNT8_9BACT7.610e-862.86Uncharacterized protein n=1 Tax=Cytophagaceae bact... [more]
UPI000F76999B2.820e-761.54nucleotidyltransferase domain-containing protein n... [more]
A0A3P1TAC4_9ACTN3.850e-761.54Nucleotidyltransferase domain-containing protein n... [more]
A0A3P1WTK0_9ACTN5.310e-761.54Nucleotidyltransferase domain-containing protein n... [more]
A0A4R9DW28_9STRE5.350e-773.33Nucleotidyltransferase domain-containing protein n... [more]
A0A0C5XC65_NOCSI7.290e-756.41Nucleotidyltransferase n=1 Tax=Nocardioides simple... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93944contigM-pyrifera_M_contig93944:620..748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816852.7132177-CDS-M-pyrifera_M_contig93944:619..7481622816852.7132177-CDS-M-pyrifera_M_contig93944:619..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93944 620..748 +
1692278216.7072473-CDS-M-pyrifera_M_contig93944:619..7481692278216.7072473-CDS-M-pyrifera_M_contig93944:619..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93944 620..748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93944.21686.1prot_M-pyrifera_M_contig93944.21686.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93944 620..748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93944.21686.1

>prot_M-pyrifera_M_contig93944.21686.1 ID=prot_M-pyrifera_M_contig93944.21686.1|Name=mRNA_M-pyrifera_M_contig93944.21686.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
AVCASVAGRISALLGSMESEHGVRVLWCVESGSRAWGMESPDS
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mRNA from alignment at M-pyrifera_M_contig93944:620..748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93944.21686.1 ID=mRNA_M-pyrifera_M_contig93944.21686.1|Name=mRNA_M-pyrifera_M_contig93944.21686.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig93944:620..748+ (Macrocystis pyrifera P11B4 male)
GCGGTGTGTGCGTCGGTGGCGGGTCGGATCAGCGCACTGTTGGGGTCGAT GGAGTCGGAGCACGGGGTTCGCGTGTTGTGGTGCGTGGAAAGTGGGTCTC GCGCGTGGGGCATGGAGTCTCCGGACTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93944:620..748+

>mRNA_M-pyrifera_M_contig93944.21686.1 ID=mRNA_M-pyrifera_M_contig93944.21686.1|Name=mRNA_M-pyrifera_M_contig93944.21686.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig93944:620..748+ (Macrocystis pyrifera P11B4 male)
GCGGTGTGTGCGTCGGTGGCGGGTCGGATCAGCGCACTGTTGGGGTCGAT
GGAGTCGGAGCACGGGGTTCGCGTGTTGTGGTGCGTGGAAAGTGGGTCTC
GCGCGTGGGGCATGGAGTCTCCGGACTCGGCGGTGTGTGCGTCGGTGGCG
GGTCGGATCAGCGCACTGTTGGGGTCGATGGAGTCGGAGCACGGGGTTCG
CGTGTTGTGGTGCGTGGAAAGTGGGTCTCGCGCGTGGGGCATGGAGTCTC
CGGACTCG
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