mRNA_M-pyrifera_M_contig93551.21609.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93551.21609.1
Unique NamemRNA_M-pyrifera_M_contig93551.21609.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A7C1YIZ2_9GAMM (Helix-turn-helix domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1YIZ2_9GAMM)

HSP 1 Score: 162 bits (411), Expect = 4.490e-46
Identity = 81/124 (65.32%), Postives = 94/124 (75.81%), Query Frame = 3
Query:  285 MNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGGDNLSPTPDSGDRPPGHVCQGPPDTRVTPRTTTGIQNESP 656
            MNWAW + L P  KL+LMAL+DAADD G+CWPSV+T+A K  VSTRTVRR +Q LI   +L +EPR+R+DGS SSNRYRL +GGGD LSP PD GD  PGH+ QGP DT V P TT G Q ESP
Sbjct:    1 MNWAWHQDLKPVPKLVLMALADAADDQGICWPSVATVAAKVGVSTRTVRRVMQGLIRCQVLTAEPRHRSDGSCSSNRYRLLMGGGDRLSPAPDGGDTTPGHLSQGPLDTGVIPGTTIGTQKESP 124          
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A7C5Q9X1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C5Q9X1_9GAMM)

HSP 1 Score: 140 bits (353), Expect = 1.560e-37
Identity = 72/124 (58.06%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  285 MNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGGDNLSPTPDSGDRPPGHVCQGPPDTRVTPRTTTGIQNESP 656
            MNWAW++ L P  KL+L+AL+DAADD GVCWP V+T+A K   S RTVRR ++ L+   LL +EPRYR DG+ SSNRYRL L GGD LSP P + D  P    QGPPD  V P TT G + ESP
Sbjct:    1 MNWAWRQPLPPTPKLVLLALADAADDAGVCWPGVATVAAKVGCSPRTVRRVMKRLVARTLLVAEPRYRADGACSSNRYRLLLEGGDRLSPAPGTADTAPARRGQGPPDATVIPGTTRGTERESP 124          
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A3B0YCS5_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0YCS5_9ZZZZ)

HSP 1 Score: 127 bits (320), Expect = 1.200e-34
Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1
Query:   10 DGQYYSDNDIARMLGISLGRLRNKLSAGSPLPPRIQPPGCRHRLWPHQAVHDWLAQFTVTVSETERSAHEPLRAGRPTNAEVRVRR 267
            DG+YY+D +IA +LGISLGRLRNKL AGSPLPPRIQPPGCR+RLW  QAVHDWL QF VT +++     EP R GRPT  EVR RR
Sbjct:    9 DGKYYTDTEIAALLGISLGRLRNKLCAGSPLPPRIQPPGCRNRLWRCQAVHDWLEQFIVTAADSAMEYPEPRRRGRPTKQEVRARR 94          
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A7C5N1Z3_9HYPH (DNA-binding protein n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5N1Z3_9HYPH)

HSP 1 Score: 111 bits (278), Expect = 1.440e-28
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 1
Query:    1 PRTDGQYYSDNDIARMLGISLGRLRNKLSAGSPLPPRIQPPGCRHRLWPHQAVHDWLAQFTV 186
            P  +G YY+D ++AR+LGIS+GRLRNKL+AG+PLPPRIQPPGCRHRLWP QAVH WL QFTV
Sbjct:    6 PNDEGSYYTDQEMARLLGISIGRLRNKLTAGNPLPPRIQPPGCRHRLWPRQAVHAWLEQFTV 67          
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A7C5N341_9HYPH (Helix-turn-helix domain-containing protein n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5N341_9HYPH)

HSP 1 Score: 111 bits (278), Expect = 2.970e-26
Identity = 64/131 (48.85%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGGDNLSPTP--DSGDRPPGHVCQGPPDTRVTPRTTTGIQNESP 656
            +SI A+ W  +++L P  KL+L+AL ++AD+ GVCWPSV T+A++C++S RTV+R LQ L   GL+  EPRYR DGS +SNRY L L  GD +S  P    G  PP     G  DT VTP TT     +SP
Sbjct:    1 MSIEAVRWGLRQKLPPTPKLVLVALGESADEQGVCWPSVPTLARRCSLSVRTVQRILQDLEARGLIRIEPRYRADGSRTSNRYILLLDKGDPVSERPVVPDGALPPRRPSAG--DTPVTPGTTREPSRKSP 129          
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: UPI0010E260F6 (helix-turn-helix domain-containing protein n=1 Tax=Crenobacter luteus TaxID=1452487 RepID=UPI0010E260F6)

HSP 1 Score: 103 bits (258), Expect = 5.510e-25
Identity = 58/111 (52.25%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGG--------GDNLSPTPDSGDRP 578
            +SI AMNWAW++RL PN KLILMAL+DAAD+ G CWP V  IA+KC  S RTV+R L+ L  +G L  E  YR DG  SSN Y L L           D L+P   +GD P
Sbjct:    1 MSIKAMNWAWEQRLPPNSKLILMALADAADEVGQCWPRVRLIAEKCCTSERTVQRVLKELEAAGFLHIERNYRKDGGQSSNVYSLSLAPPSDKSSPPSDRLAPGGGTGDTP 111          
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: UPI001673B140 (helix-turn-helix domain-containing protein n=6 Tax=Pseudomonas syringae group TaxID=136849 RepID=UPI001673B140)

HSP 1 Score: 107 bits (267), Expect = 7.390e-25
Identity = 61/120 (50.83%), Postives = 75/120 (62.50%), Query Frame = 3
Query:  270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRL--QLGGGDNLSPTP------DSGDRPPG--HVCQG 599
            +SI AMNWAW+++LSP+ KLILMA++DAAD++G CWP V TIAKKC VS RTV+R L+  +   L+   PR+  D    SN YRL  Q    DNLSP        D  D  PG    CQG
Sbjct:    1 MSIKAMNWAWEQKLSPSSKLILMAIADAADEEGDCWPKVKTIAKKCGVSDRTVQRVLKEFVSGNLISVTPRFSQDRRQVSNNYRLNPQNHYPDNLSPPQAPRSRRDEADVAPGVPQKCQG 120          
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A6A7ZJD6_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas helleri TaxID=1608996 RepID=A0A6A7ZJD6_9PSED)

HSP 1 Score: 105 bits (261), Expect = 5.380e-24
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGGDNLSPTPDS 566
            +SI A+NWAW ++L PN KLILMA++DAAD++G CWP + TIAKKC VS RTV+R L+  I +  +    RY ++G   SN YRL       L+P PD+
Sbjct:    1 MSIKAINWAWDQQLPPNAKLILMAIADAADEEGNCWPKIKTIAKKCGVSQRTVQRALKDFISNNFISVTARYSHEGRQVSNNYRLSY-----LNPYPDN 94          
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: UPI001FD262B4 (helix-turn-helix domain-containing protein n=2 Tax=Xanthomonas TaxID=338 RepID=UPI001FD262B4)

HSP 1 Score: 101 bits (252), Expect = 5.920e-24
Identity = 58/116 (50.00%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRL------------QLGGGDNLSPTPDSGDRPP 581
            +SI A NWAW++RL PN KLILMAL+D+AD+ G CWP V  IA+KC  S RTV+R L+ L E G L  E R+R DG  SSN Y L             L   D LSP  D+   PP
Sbjct:    1 MSIKARNWAWEQRLPPNSKLILMALADSADEIGKCWPRVRLIAEKCCASERTVQRVLKELEERGFLHIERRFRGDGGQSSNAYYLCLESPPVNLSSPSLTSSDKLSPGGDAAVTPP 116          
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: K0M9H0_BORPB (Uncharacterized protein n=11 Tax=Proteobacteria TaxID=1224 RepID=K0M9H0_BORPB)

HSP 1 Score: 105 bits (262), Expect = 6.630e-24
Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGG-DNLSP 554
            +SI AMNWAW++RL PN KLILMAL+DAAD+ G CWP V  IA+KC  S RTV+R L+ L  +G L  E  YR DGS SSN Y L L    D LSP
Sbjct:    1 MSIKAMNWAWEQRLPPNSKLILMALADAADEVGQCWPRVRLIAEKCCTSERTVQRVLKELEAAGFLHIERNYRKDGSQSSNVYSLSLASPPDKLSP 96          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1YIZ2_9GAMM4.490e-4665.32Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A7C5Q9X1_9GAMM1.560e-3758.06Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A3B0YCS5_9ZZZZ1.200e-3469.77Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A7C5N1Z3_9HYPH1.440e-2875.81DNA-binding protein n=1 Tax=Devosia sp. TaxID=1871... [more]
A0A7C5N341_9HYPH2.970e-2648.85Helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI0010E260F65.510e-2552.25helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001673B1407.390e-2550.83helix-turn-helix domain-containing protein n=6 Tax... [more]
A0A6A7ZJD6_9PSED5.380e-2450.51Uncharacterized protein n=1 Tax=Pseudomonas heller... [more]
UPI001FD262B45.920e-2450.00helix-turn-helix domain-containing protein n=2 Tax... [more]
K0M9H0_BORPB6.630e-2459.38Uncharacterized protein n=11 Tax=Proteobacteria Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93551contigM-pyrifera_M_contig93551:29..684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score102.4
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog380358.XALC_2645
KEGG koko:K19505,ko:K21885
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Helix-turn-helix domain
EggNOG OGs1PR7B@1224,1RUV1@1236,1XBB9@135614,COG0640@1,COG0640@2
COG Functional cat.K
Best tax levelXanthomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size656
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.392301-UTR-M-pyrifera_M_contig93551:28..3121622816848.392301-UTR-M-pyrifera_M_contig93551:28..312Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93551 29..312 +
1692278214.0097237-UTR-M-pyrifera_M_contig93551:28..3121692278214.0097237-UTR-M-pyrifera_M_contig93551:28..312Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93551 29..312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816848.4056342-CDS-M-pyrifera_M_contig93551:312..6841622816848.4056342-CDS-M-pyrifera_M_contig93551:312..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93551 313..684 +
1692278214.021116-CDS-M-pyrifera_M_contig93551:312..6841692278214.021116-CDS-M-pyrifera_M_contig93551:312..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93551 313..684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93551.21609.1prot_M-pyrifera_M_contig93551.21609.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93551 313..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93551.21609.1

>prot_M-pyrifera_M_contig93551.21609.1 ID=prot_M-pyrifera_M_contig93551.21609.1|Name=mRNA_M-pyrifera_M_contig93551.21609.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
MNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRR
GLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGGDNLSPTPDSGDRPPG
HVCQGPPDTRVTPRTTTGIQNESP
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mRNA from alignment at M-pyrifera_M_contig93551:29..684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93551.21609.1 ID=mRNA_M-pyrifera_M_contig93551.21609.1|Name=mRNA_M-pyrifera_M_contig93551.21609.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=656bp|location=Sequence derived from alignment at M-pyrifera_M_contig93551:29..684+ (Macrocystis pyrifera P11B4 male)
CCAAGAACCGACGGGCAATATTATTCCGACAACGACATTGCGCGCATGCT CGGGATTTCATTGGGCCGGTTGCGCAACAAATTGAGCGCGGGCAGTCCAT TACCACCACGGATTCAACCGCCAGGATGTCGCCATCGCTTGTGGCCACAC CAAGCCGTACATGATTGGTTGGCTCAATTTACAGTCACGGTGTCCGAGAC TGAACGGTCCGCACATGAACCGCTCCGAGCCGGACGACCGACTAATGCGG AGGTGCGAGTCCGCCGTCGGTGAGCATCGCCGCCATGAACTGGGCGTGGC AGCGACGGCTTTCGCCAAACCTGAAACTGATATTAATGGCCTTGTCCGAC GCAGCAGACGACGACGGGGTTTGCTGGCCCAGCGTTTCGACGATAGCGAA GAAATGCAATGTGTCGACACGCACCGTTCGGCGCGGTCTTCAGTCACTGA TCGAAAGCGGTTTATTGGACTCCGAGCCGCGTTACCGTAATGACGGATCG AATTCGTCAAACCGCTATCGCCTGCAACTCGGAGGGGGTGACAATTTGTC ACCCACCCCTGACAGCGGTGACAGGCCCCCCGGACACGTGTGTCAGGGGC CCCCTGACACACGTGTCACCCCTAGAACCACCACTGGAATCCAAAACGAA TCACCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93551:29..684+

>mRNA_M-pyrifera_M_contig93551.21609.1 ID=mRNA_M-pyrifera_M_contig93551.21609.1|Name=mRNA_M-pyrifera_M_contig93551.21609.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig93551:29..684+ (Macrocystis pyrifera P11B4 male)
ATGAACTGGGCGTGGCAGCGACGGCTTTCGCCAAACCTGAAACTGATATT
AATGGCCTTGTCCGACGCAGCAGACGACGACGGGGTTTGCTGGCCCAGCG
TTTCGACGATAGCGAAGAAATGCAATGTGTCGACACGCACCGTTCGGCGC
GGTCTTCAGTCACTGATCGAAAGCGGTTTATTGGACTCCGAGCCGCGTTA
CCGTAATGACGGATCGAATTCGTCAAACCGCTATCGCCTGCAACTCGGAG
GGGGTGACAATTTGTCACCCACCCCTGACAGCGGTGACAGGCCCCCCGGA
CACGTGTGTCAGGGGCCCCCTGACACACGTGTCACCCCTAGAACCACCAC
TGGAATCCAAAACGAATCACCAATGAACTGGGCGTGGCAGCGACGGCTTT
CGCCAAACCTGAAACTGATATTAATGGCCTTGTCCGACGCAGCAGACGAC
GACGGGGTTTGCTGGCCCAGCGTTTCGACGATAGCGAAGAAATGCAATGT
GTCGACACGCACCGTTCGGCGCGGTCTTCAGTCACTGATCGAAAGCGGTT
TATTGGACTCCGAGCCGCGTTACCGTAATGACGGATCGAATTCGTCAAAC
CGCTATCGCCTGCAACTCGGAGGGGGTGACAATTTGTCACCCACCCCTGA
CAGCGGTGACAGGCCCCCCGGACACGTGTGTCAGGGGCCCCCTGACACAC
GTGTCACCCCTAGAACCACCACTGGAATCCAAAACGAATCACCA
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