mRNA_M-pyrifera_M_contig93551.21609.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A7C1YIZ2_9GAMM (Helix-turn-helix domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1YIZ2_9GAMM) HSP 1 Score: 162 bits (411), Expect = 4.490e-46 Identity = 81/124 (65.32%), Postives = 94/124 (75.81%), Query Frame = 3
Query: 285 MNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGGDNLSPTPDSGDRPPGHVCQGPPDTRVTPRTTTGIQNESP 656
MNWAW + L P KL+LMAL+DAADD G+CWPSV+T+A K VSTRTVRR +Q LI +L +EPR+R+DGS SSNRYRL +GGGD LSP PD GD PGH+ QGP DT V P TT G Q ESP
Sbjct: 1 MNWAWHQDLKPVPKLVLMALADAADDQGICWPSVATVAAKVGVSTRTVRRVMQGLIRCQVLTAEPRHRSDGSCSSNRYRLLMGGGDRLSPAPDGGDTTPGHLSQGPLDTGVIPGTTIGTQKESP 124
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A7C5Q9X1_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C5Q9X1_9GAMM) HSP 1 Score: 140 bits (353), Expect = 1.560e-37 Identity = 72/124 (58.06%), Postives = 86/124 (69.35%), Query Frame = 3
Query: 285 MNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGGDNLSPTPDSGDRPPGHVCQGPPDTRVTPRTTTGIQNESP 656
MNWAW++ L P KL+L+AL+DAADD GVCWP V+T+A K S RTVRR ++ L+ LL +EPRYR DG+ SSNRYRL L GGD LSP P + D P QGPPD V P TT G + ESP
Sbjct: 1 MNWAWRQPLPPTPKLVLLALADAADDAGVCWPGVATVAAKVGCSPRTVRRVMKRLVARTLLVAEPRYRADGACSSNRYRLLLEGGDRLSPAPGTADTAPARRGQGPPDATVIPGTTRGTERESP 124
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A3B0YCS5_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0YCS5_9ZZZZ) HSP 1 Score: 127 bits (320), Expect = 1.200e-34 Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1
Query: 10 DGQYYSDNDIARMLGISLGRLRNKLSAGSPLPPRIQPPGCRHRLWPHQAVHDWLAQFTVTVSETERSAHEPLRAGRPTNAEVRVRR 267
DG+YY+D +IA +LGISLGRLRNKL AGSPLPPRIQPPGCR+RLW QAVHDWL QF VT +++ EP R GRPT EVR RR
Sbjct: 9 DGKYYTDTEIAALLGISLGRLRNKLCAGSPLPPRIQPPGCRNRLWRCQAVHDWLEQFIVTAADSAMEYPEPRRRGRPTKQEVRARR 94
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A7C5N1Z3_9HYPH (DNA-binding protein n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5N1Z3_9HYPH) HSP 1 Score: 111 bits (278), Expect = 1.440e-28 Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 1
Query: 1 PRTDGQYYSDNDIARMLGISLGRLRNKLSAGSPLPPRIQPPGCRHRLWPHQAVHDWLAQFTV 186
P +G YY+D ++AR+LGIS+GRLRNKL+AG+PLPPRIQPPGCRHRLWP QAVH WL QFTV
Sbjct: 6 PNDEGSYYTDQEMARLLGISIGRLRNKLTAGNPLPPRIQPPGCRHRLWPRQAVHAWLEQFTV 67
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A7C5N341_9HYPH (Helix-turn-helix domain-containing protein n=1 Tax=Devosia sp. TaxID=1871048 RepID=A0A7C5N341_9HYPH) HSP 1 Score: 111 bits (278), Expect = 2.970e-26 Identity = 64/131 (48.85%), Postives = 84/131 (64.12%), Query Frame = 3
Query: 270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGGDNLSPTP--DSGDRPPGHVCQGPPDTRVTPRTTTGIQNESP 656
+SI A+ W +++L P KL+L+AL ++AD+ GVCWPSV T+A++C++S RTV+R LQ L GL+ EPRYR DGS +SNRY L L GD +S P G PP G DT VTP TT +SP
Sbjct: 1 MSIEAVRWGLRQKLPPTPKLVLVALGESADEQGVCWPSVPTLARRCSLSVRTVQRILQDLEARGLIRIEPRYRADGSRTSNRYILLLDKGDPVSERPVVPDGALPPRRPSAG--DTPVTPGTTREPSRKSP 129
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: UPI0010E260F6 (helix-turn-helix domain-containing protein n=1 Tax=Crenobacter luteus TaxID=1452487 RepID=UPI0010E260F6) HSP 1 Score: 103 bits (258), Expect = 5.510e-25 Identity = 58/111 (52.25%), Postives = 69/111 (62.16%), Query Frame = 3
Query: 270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGG--------GDNLSPTPDSGDRP 578
+SI AMNWAW++RL PN KLILMAL+DAAD+ G CWP V IA+KC S RTV+R L+ L +G L E YR DG SSN Y L L D L+P +GD P
Sbjct: 1 MSIKAMNWAWEQRLPPNSKLILMALADAADEVGQCWPRVRLIAEKCCTSERTVQRVLKELEAAGFLHIERNYRKDGGQSSNVYSLSLAPPSDKSSPPSDRLAPGGGTGDTP 111
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: UPI001673B140 (helix-turn-helix domain-containing protein n=6 Tax=Pseudomonas syringae group TaxID=136849 RepID=UPI001673B140) HSP 1 Score: 107 bits (267), Expect = 7.390e-25 Identity = 61/120 (50.83%), Postives = 75/120 (62.50%), Query Frame = 3
Query: 270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRL--QLGGGDNLSPTP------DSGDRPPG--HVCQG 599
+SI AMNWAW+++LSP+ KLILMA++DAAD++G CWP V TIAKKC VS RTV+R L+ + L+ PR+ D SN YRL Q DNLSP D D PG CQG
Sbjct: 1 MSIKAMNWAWEQKLSPSSKLILMAIADAADEEGDCWPKVKTIAKKCGVSDRTVQRVLKEFVSGNLISVTPRFSQDRRQVSNNYRLNPQNHYPDNLSPPQAPRSRRDEADVAPGVPQKCQG 120
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: A0A6A7ZJD6_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas helleri TaxID=1608996 RepID=A0A6A7ZJD6_9PSED) HSP 1 Score: 105 bits (261), Expect = 5.380e-24 Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 3
Query: 270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGGDNLSPTPDS 566
+SI A+NWAW ++L PN KLILMA++DAAD++G CWP + TIAKKC VS RTV+R L+ I + + RY ++G SN YRL L+P PD+
Sbjct: 1 MSIKAINWAWDQQLPPNAKLILMAIADAADEEGNCWPKIKTIAKKCGVSQRTVQRALKDFISNNFISVTARYSHEGRQVSNNYRLSY-----LNPYPDN 94
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: UPI001FD262B4 (helix-turn-helix domain-containing protein n=2 Tax=Xanthomonas TaxID=338 RepID=UPI001FD262B4) HSP 1 Score: 101 bits (252), Expect = 5.920e-24 Identity = 58/116 (50.00%), Postives = 69/116 (59.48%), Query Frame = 3
Query: 270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRL------------QLGGGDNLSPTPDSGDRPP 581
+SI A NWAW++RL PN KLILMAL+D+AD+ G CWP V IA+KC S RTV+R L+ L E G L E R+R DG SSN Y L L D LSP D+ PP
Sbjct: 1 MSIKARNWAWEQRLPPNSKLILMALADSADEIGKCWPRVRLIAEKCCASERTVQRVLKELEERGFLHIERRFRGDGGQSSNAYYLCLESPPVNLSSPSLTSSDKLSPGGDAAVTPP 116
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Match: K0M9H0_BORPB (Uncharacterized protein n=11 Tax=Proteobacteria TaxID=1224 RepID=K0M9H0_BORPB) HSP 1 Score: 105 bits (262), Expect = 6.630e-24 Identity = 57/96 (59.38%), Postives = 66/96 (68.75%), Query Frame = 3
Query: 270 VSIAAMNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRGLQSLIESGLLDSEPRYRNDGSNSSNRYRLQLGGG-DNLSP 554
+SI AMNWAW++RL PN KLILMAL+DAAD+ G CWP V IA+KC S RTV+R L+ L +G L E YR DGS SSN Y L L D LSP
Sbjct: 1 MSIKAMNWAWEQRLPPNSKLILMALADAADEVGQCWPRVRLIAEKCCTSERTVQRVLKELEAAGFLHIERNYRKDGSQSSNVYSLSLASPPDKLSP 96 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93551.21609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig93551.21609.1 >prot_M-pyrifera_M_contig93551.21609.1 ID=prot_M-pyrifera_M_contig93551.21609.1|Name=mRNA_M-pyrifera_M_contig93551.21609.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp MNWAWQRRLSPNLKLILMALSDAADDDGVCWPSVSTIAKKCNVSTRTVRRback to top mRNA from alignment at M-pyrifera_M_contig93551:29..684+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig93551.21609.1 ID=mRNA_M-pyrifera_M_contig93551.21609.1|Name=mRNA_M-pyrifera_M_contig93551.21609.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=656bp|location=Sequence derived from alignment at M-pyrifera_M_contig93551:29..684+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig93551:29..684+ >mRNA_M-pyrifera_M_contig93551.21609.1 ID=mRNA_M-pyrifera_M_contig93551.21609.1|Name=mRNA_M-pyrifera_M_contig93551.21609.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig93551:29..684+ (Macrocystis pyrifera P11B4 male)back to top |