mRNA_M-pyrifera_M_contig93484.21589.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93484.21589.1
Unique NamemRNA_M-pyrifera_M_contig93484.21589.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93484.21589.1 vs. uniprot
Match: UPI001685492F (DUF3223 domain-containing protein n=1 Tax=Anabaena catenula TaxID=1296320 RepID=UPI001685492F)

HSP 1 Score: 93.6 bits (231), Expect = 7.400e-22
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 LLYAFTLDFEIDPFKVSVESHNGTVAVFEDAMLTANWVGYHSANAELRLLSRTGHAQVSVERIDWSALLR 210
            LL+ FTL   I+P  V+V S NGTV +FED  L  +WVGYH+ NAELRL+SRTGH+Q+S ER+DWS +L+
Sbjct:  162 LLFDFTLKSSINPLMVAVGSRNGTVPIFEDRQLNDDWVGYHNENAELRLVSRTGHSQLSTERVDWSIILQ 231
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93484.21589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001685492F7.400e-2260.00DUF3223 domain-containing protein n=1 Tax=Anabaena... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93484contigM-pyrifera_M_contig93484:529..750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.4748023-CDS-M-pyrifera_M_contig93484:528..7501622816847.4748023-CDS-M-pyrifera_M_contig93484:528..750Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93484 529..750 -
1692278213.4688013-CDS-M-pyrifera_M_contig93484:528..7501692278213.4688013-CDS-M-pyrifera_M_contig93484:528..750Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93484 529..750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93484.21589.1prot_M-pyrifera_M_contig93484.21589.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93484 529..750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93484.21589.1

>prot_M-pyrifera_M_contig93484.21589.1 ID=prot_M-pyrifera_M_contig93484.21589.1|Name=mRNA_M-pyrifera_M_contig93484.21589.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
LLYAFTLDFEIDPFKVSVESHNGTVAVFEDAMLTANWVGYHSANAELRLL
SRTGHAQVSVERIDWSALLRPSG*
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mRNA from alignment at M-pyrifera_M_contig93484:529..750-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93484.21589.1 ID=mRNA_M-pyrifera_M_contig93484.21589.1|Name=mRNA_M-pyrifera_M_contig93484.21589.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig93484:529..750- (Macrocystis pyrifera P11B4 male)
TTGCTTTACGCCTTCACTCTGGACTTCGAAATCGACCCTTTTAAAGTTTC
TGTGGAGTCTCACAACGGCACTGTTGCGGTATTTGAAGACGCGATGCTTA
CTGCTAACTGGGTAGGCTACCACTCTGCAAATGCTGAACTACGGCTTTTA
TCGCGTACCGGACACGCTCAGGTTTCGGTAGAACGGATCGATTGGTCGGC
ACTGCTTCGCCCCAGTGGTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93484:529..750-

>mRNA_M-pyrifera_M_contig93484.21589.1 ID=mRNA_M-pyrifera_M_contig93484.21589.1|Name=mRNA_M-pyrifera_M_contig93484.21589.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig93484:529..750- (Macrocystis pyrifera P11B4 male)
TTGCTTTACGCCTTCACTCTGGACTTCGAAATCGACCCTTTTAAAGTTTC
TGTGGAGTCTCACAACGGCACTGTTGCGGTATTTGAAGACGCGATGCTTA
CTGCTAACTGGGTAGGCTACCACTCTGCAAATGCTGAACTACGGCTTTTA
TCGCGTACCGGACACGCTCAGGTTTCGGTAGAACGGATCGATTGGTCGGC
ACTGCTTCGCCCCAGTGGTTAATTGCTTTACGCCTTCACTCTGGACTTCG
AAATCGACCCTTTTAAAGTTTCTGTGGAGTCTCACAACGGCACTGTTGCG
GTATTTGAAGACGCGATGCTTACTGCTAACTGGGTAGGCTACCACTCTGC
AAATGCTGAACTACGGCTTTTATCGCGTACCGGACACGCTCAGGTTTCGG
TAGAACGGATCGATTGGTCGGCACTGCTTCGCCCCAGTGGTTAA
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