mRNA_M-pyrifera_M_contig9348.21588.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9348.21588.1
Unique NamemRNA_M-pyrifera_M_contig9348.21588.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Match: D7FY71_ECTSI (DNA topoisomerase VI subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY71_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 2.830e-54
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 270
            MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN
Sbjct:  476 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 565
[Close]
BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Match: A0A6H5KKC7_9PHAE (TP6A_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC7_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.640e-53
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 270
            MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN
Sbjct:  646 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 735
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BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Match: A0A7S0GDF4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GDF4_9STRA)

HSP 1 Score: 172 bits (437), Expect = 4.940e-53
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 270
            MAEDRFY KYPCI+ITAKGQPDVATR+FL RLK EL IP++GLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLG+RPSDLDRY+
Sbjct:   37 MAEDRFYHKYPCIIITAKGQPDVATRMFLSRLKSELKIPILGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGLRPSDLDRYD 126
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BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Match: A0A7S0ZD75_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZD75_9RHOD)

HSP 1 Score: 170 bits (430), Expect = 3.840e-52
Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    1 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRY 267
            ++EDRFY KYPCI+ITAKGQPDVATRLFLKRLK+ L IP++GLVDSDPYGLKILSVYMSGSKNMSYDSA+LTTPDIKWLGVRPSDLD+Y
Sbjct:   24 LSEDRFYNKYPCIIITAKGQPDVATRLFLKRLKQTLQIPILGLVDSDPYGLKILSVYMSGSKNMSYDSANLTTPDIKWLGVRPSDLDKY 112
[Close]
BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Match: A0A7S3A416_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A416_9RHOD)

HSP 1 Score: 167 bits (423), Expect = 1.090e-51
Identity = 76/90 (84.44%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 270
            +AEDRFY KYPCI+ITAKGQPDVATR+FLK+L+  L IP++GLVDSDPYGLKILSVYMSGSK+MSYDSA+LTTPDIKWLGVRPSDLD+YN
Sbjct:   21 LAEDRFYNKYPCIIITAKGQPDVATRMFLKKLRYTLRIPILGLVDSDPYGLKILSVYMSGSKSMSYDSANLTTPDIKWLGVRPSDLDKYN 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Match: A0A7S3A2U5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2U5_9RHOD)

HSP 1 Score: 167 bits (423), Expect = 4.050e-51
Identity = 76/90 (84.44%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 270
            +AEDRFY KYPCI+ITAKGQPDVATR+FLK+L+  L IP++GLVDSDPYGLKILSVYMSGSK+MSYDSA+LTTPDIKWLGVRPSDLD+YN
Sbjct:   21 LAEDRFYNKYPCIIITAKGQPDVATRMFLKKLRYTLRIPILGLVDSDPYGLKILSVYMSGSKSMSYDSANLTTPDIKWLGVRPSDLDKYN 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Match: A0A7S0AGI7_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7S0AGI7_9STRA)

HSP 1 Score: 167 bits (423), Expect = 6.610e-51
Identity = 77/90 (85.56%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 270
            MAEDRFY KYPCI+ITAKGQPDVA+R+FL R+  EL IPV+GLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLG+RPSDLD+Y+
Sbjct:   37 MAEDRFYHKYPCIIITAKGQPDVASRMFLSRITSELKIPVLGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGLRPSDLDKYD 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Match: A0A1Z5JKS0_FISSO (Meiotic recombination protein SPO11 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKS0_FISSO)

HSP 1 Score: 172 bits (437), Expect = 1.500e-50
Identity = 79/90 (87.78%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    1 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 270
            MAEDRFY +YPCI+ITAKGQPD+ATR+FLKRLK EL IPV+GLVDSDPYGLKILSVYMSGSKNMSYDS+SLTTPDIKWLG+RPSDLDRY+
Sbjct:  266 MAEDRFYHRYPCIIITAKGQPDIATRMFLKRLKEELKIPVLGLVDSDPYGLKILSVYMSGSKNMSYDSSSLTTPDIKWLGLRPSDLDRYD 355
[Close]
BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Match: A0A5J4YXA0_PORPP (DNA topoisomerase 6 subunit A n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXA0_PORPP)

HSP 1 Score: 172 bits (435), Expect = 2.560e-50
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 270
            +AEDRFY + PCI+ITAKGQPDVATRLFLKRLK  LNIP++GLVDSDPYGLKILSVYMSGSKNMSYDSA+LTTPDIKWLGVRPSDLDRYN
Sbjct:  246 LAEDRFYNRCPCIIITAKGQPDVATRLFLKRLKNTLNIPILGLVDSDPYGLKILSVYMSGSKNMSYDSANLTTPDIKWLGVRPSDLDRYN 335
[Close]
BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Match: A0A7S2EAC6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAC6_TRICV)

HSP 1 Score: 166 bits (421), Expect = 5.640e-50
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN 270
            +AEDRFY +YPC+VITAKGQPDVATR+FL RL  EL IPV+GLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKW+G+RPSDLD+Y+
Sbjct:   86 LAEDRFYHRYPCVVITAKGQPDVATRMFLSRLTSELQIPVLGLVDSDPYGLKILSVYMSGSKNMSYDSASLTTPDIKWIGLRPSDLDKYD 175
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9348.21588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY71_ECTSI2.830e-54100.00DNA topoisomerase VI subunit A n=1 Tax=Ectocarpus ... [more]
A0A6H5KKC7_9PHAE1.640e-53100.00TP6A_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S0GDF4_9STRA4.940e-5388.89Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0ZD75_9RHOD3.840e-5287.64Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S3A416_9RHOD1.090e-5184.44Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3A2U5_9RHOD4.050e-5184.44Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0AGI7_9STRA6.610e-5185.56Hypothetical protein n=2 Tax=Mediophyceae TaxID=58... [more]
A0A1Z5JKS0_FISSO1.500e-5087.78Meiotic recombination protein SPO11 n=2 Tax=Fistul... [more]
A0A5J4YXA0_PORPP2.560e-5088.89DNA topoisomerase 6 subunit A n=1 Tax=Porphyridium... [more]
A0A7S2EAC6_TRICV5.640e-5084.44Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9348contigM-pyrifera_M_contig9348:2658..4003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.0
Seed ortholog evalue2e-45
Seed eggNOG ortholog2880.D7FY71
Preferred nameTOP6A
KEGG koko:K03166,ko:K10878
KEGG Pathwayko04113,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000706,GO:0000729,GO:0001708,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003918,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0008544,GO:0009888,GO:0009913,GO:0009957,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0016889,GO:0016894,GO:0017111,GO:0022402,GO:0022414,GO:0030154,GO:0030855,GO:0031974,GO:0031981,GO:0032502,GO:0033554,GO:0034641,GO:0035825,GO:0042138,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045165,GO:0046483,GO:0048285,GO:0048856,GO:0048869,GO:0050896,GO:0051321,GO:0051716,GO:0060429,GO:0061505,GO:0061982,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.DNA topoisomerase VI subunit A
EggNOG OGsCOG1697@1,KOG2795@2759
Ec32 ortholog descriptionDNA topoisomerase VI subunit A
Ec32 orthologEc-24_003570.1
EC5.99.1.3
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons3
Model size271
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9348.21588.1prot_M-pyrifera_M_contig9348.21588.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9348 2658..4003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.4035363-CDS-M-pyrifera_M_contig9348:2657..27201622816847.4035363-CDS-M-pyrifera_M_contig9348:2657..2720Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9348 2658..2720 +
1692278213.4335377-CDS-M-pyrifera_M_contig9348:2657..27201692278213.4335377-CDS-M-pyrifera_M_contig9348:2657..2720Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9348 2658..2720 +
1622816847.4188762-CDS-M-pyrifera_M_contig9348:3323..34381622816847.4188762-CDS-M-pyrifera_M_contig9348:3323..3438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9348 3324..3438 +
1692278213.4477882-CDS-M-pyrifera_M_contig9348:3323..34381692278213.4477882-CDS-M-pyrifera_M_contig9348:3323..3438Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9348 3324..3438 +
1622816847.433401-CDS-M-pyrifera_M_contig9348:3911..40031622816847.433401-CDS-M-pyrifera_M_contig9348:3911..4003Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9348 3912..4003 +
1692278213.4580693-CDS-M-pyrifera_M_contig9348:3911..40031692278213.4580693-CDS-M-pyrifera_M_contig9348:3911..4003Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9348 3912..4003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9348.21588.1

>prot_M-pyrifera_M_contig9348.21588.1 ID=prot_M-pyrifera_M_contig9348.21588.1|Name=mRNA_M-pyrifera_M_contig9348.21588.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
MAEDRFYQKYPCIVITAKGQPDVATRLFLKRLKRELNIPVMGLVDSDPYG
LKILSVYMSGSKNMSYDSASLTTPDIKWLGVRPSDLDRYN
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mRNA from alignment at M-pyrifera_M_contig9348:2658..4003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9348.21588.1 ID=mRNA_M-pyrifera_M_contig9348.21588.1|Name=mRNA_M-pyrifera_M_contig9348.21588.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1346bp|location=Sequence derived from alignment at M-pyrifera_M_contig9348:2658..4003+ (Macrocystis pyrifera P11B4 male)
ATGGCGGAGGATAGGTTCTACCAGAAGTACCCGTGCATTGTCATCACCGC
CAAGGGCCAGCCGGTGAGCCTGAAGAAATGTCGAAACCACGAAGGCAGAA
AGTACCGTTGAGAAATGTGAGGAAATGTGAGGAAATGTCTTGCGCTGGCC
ACGCTTGGCGGATTGTCGTAGTCGTTGCTACTGCCGCTGCTGCTGCTGCT
TCTGCTGCTGGTGGTCTTGCTTGTGCCGCTGCTGCTAGTATTGCTGGTGT
TCTGCTGGCGTTATTGGTGGTGGCGGCGGTGGTGGTAATGCCGCTGCAGC
TGTTTCTGCAGCTGCAATTCCTGCTATCGTTGCCGCTGCTGCCGCCGCCG
CTGCATCTCGGCTTGGCGGGAAAGCTTTCGGGTCGTTTGCTCGCAGGCGT
GTGTGTGCGTTATCAAGCAGGGGGGTCGGGGGCGCAGCTCGCCGGACTGT
GCCATGCCACCGAGCACGTGATAGGTGCTACCCCACGCTATGGGGTACGG
CATGCACTGCTGGATGGTCGGTTGATACACACGCTACAGGGGTTTCAGAG
TCTAGGATGCCGAGAGTGAGTTCCCTACGGTATCGCTCAAAGCACAATAT
TCCACGCTTCACCCCCGACCCCCCCTCGCCGCGCCCCCCCCCTCCCCTCC
ACCCCTCCGTGTACAGGATGTGGCGACGCGGTTGTTCCTGAAGCGCCTCA
AGCGCGAGCTAAACATTCCCGTCATGGGGCTCGTCGACAGCGACCCCTAC
GGGCTGAAGATTCTCTCCGTGTACATGAGCGGTGAGGGAGACAAACCATA
TACCGCGACGTTTTTGTTTCTTCAGTTTTCGTGATTGGATATAATCCAGA
GGACCAACAGTAGACTGCAGGGGGGAGATATCCGACGTTTTCACGTGTAC
AAAGACGGGTATCCCCCGTCCCCACCCCCGGGTCCGACACTGAGCATGCC
GGACAACTCCACGGGATATATTGTCCCAGGTCAACAAGAGATGTAGGGAA
GACAAGTCCATATTTTTCCCTGGATTGTATACGACTGTAGAACTACTGCC
CCCGCCCCCAGACAGACAGGATACTATAAGGAGAAACCGTCCGTCTCTAT
CCTGTGTACTGCGTACTCCAGGGGAACCGGGAGTATGCAGGAAGAAAACA
TCCGTCGTTATCTCGTGTACCACTGTAAGCACTAAGCGTAGTATCCCCCA
TCCCCGCCCCCGATCCCCTCCTCGCATTTACCTTCTGCCGTTGGCGCTCG
GAAGGTTCGAAAAACATGTCGTACGACAGCGCTAGCCTCACGACCCCCGA
CATAAAGTGGCTTGGGGTGAGACCCTCAGACCTGGACAGGTACAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9348:2658..4003+

>mRNA_M-pyrifera_M_contig9348.21588.1 ID=mRNA_M-pyrifera_M_contig9348.21588.1|Name=mRNA_M-pyrifera_M_contig9348.21588.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig9348:2658..4003+ (Macrocystis pyrifera P11B4 male)
ATGGCGGAGGATAGGTTCTACCAGAAGTACCCGTGCATTGTCATCACCGC
CAAGGGCCAGCCGATGGCGGAGGATAGGTTCTACCAGAAGTACCCGTGCA
TTGTCATCACCGCCAAGGGCCAGCCGGATGTGGCGACGCGGTTGTTCCTG
AAGCGCCTCAAGCGCGAGCTAAACATTCCCGTCATGGGGCTCGTCGACAG
CGACCCCTACGGGCTGAAGATTCTCTCCGTGTACATGAGCGGATGTGGCG
ACGCGGTTGTTCCTGAAGCGCCTCAAGCGCGAGCTAAACATTCCCGTCAT
GGGGCTCGTCGACAGCGACCCCTACGGGCTGAAGATTCTCTCCGTGTACA
TGAGCGGTTCGAAAAACATGTCGTACGACAGCGCTAGCCTCACGACCCCC
GACATAAAGTGGCTTGGGGTGAGACCCTCAGACCTGGACAGGTACAACGT
TCGAAAAACATGTCGTACGACAGCGCTAGCCTCACGACCCCCGACATAAA
GTGGCTTGGGGTGAGACCCTCAGACCTGGACAGGTACAAC
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