mRNA_M-pyrifera_M_contig93467.21584.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93467.21584.1
Unique NamemRNA_M-pyrifera_M_contig93467.21584.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93467.21584.1 vs. uniprot
Match: A0A1I8BEE2_MELHA (Uncharacterized protein n=4 Tax=Meloidogyne TaxID=189290 RepID=A0A1I8BEE2_MELHA)

HSP 1 Score: 74.3 bits (181), Expect = 1.580e-11
Identity = 65/215 (30.23%), Postives = 116/215 (53.95%), Query Frame = 1 
Query:   40 LAKKVKVFHELLTEMKVTQFTMWDSIVTKLAKDERFSLLPTMGARKEAFEAYARGRATARKVEKAQAAKALAA----LVEEA-VKKEDILEVKEFEKRYGQDERLKKYSSLSAKEIKEAFEKVAGPIREARRKEKNVDRAEGRHIYVGLLQECEWIRHDSHWSDVRRRLRRDSARYSRCGLASEEKEDLFYDHLKRL-QKARERERKLRNLEDEA 666
            L +++K F +LL + KV+  + W+  ++K+  D+R+ LL  +  RK AF+AY R RA   K EK + AK   A    L+EEA +  +          ++ +D R K    +  +E    F+     + +  ++EK  +R + +  +V LL+E E++R +S W+ V+++L +D  RY    L SE ++ LF +H+K   +   E E + + +E+EA
Sbjct:  297 LEERIKQFRQLLEDKKVSATSTWEKELSKIVFDQRYLLLSAV-ERKAAFDAYCRERAEIEKEEKRKKAKEAKAEFYKLLEEAKLHGKSTFSSFSTNSKWAKDSRFKAVEKVRDREA--YFKDFVEQLYKKEKEEKRKEREKAKECFVALLKEQEYLRRNSVWAVVKKKLDKDE-RYRNKNLDSETRQKLFDEHVKTCPEPTEEEEAEAKRVEEEA 507
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BLAST of mRNA_M-pyrifera_M_contig93467.21584.1 vs. uniprot
Match: A0A6V7WY88_9BILA (40S ribosomal protein S21 n=3 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7WY88_9BILA)

HSP 1 Score: 74.3 bits (181), Expect = 1.710e-11
Identity = 65/215 (30.23%), Postives = 116/215 (53.95%), Query Frame = 1 
Query:   40 LAKKVKVFHELLTEMKVTQFTMWDSIVTKLAKDERFSLLPTMGARKEAFEAYARGRATARKVEKAQAAKALAA----LVEEA-VKKEDILEVKEFEKRYGQDERLKKYSSLSAKEIKEAFEKVAGPIREARRKEKNVDRAEGRHIYVGLLQECEWIRHDSHWSDVRRRLRRDSARYSRCGLASEEKEDLFYDHLKRL-QKARERERKLRNLEDEA 666
            L +++K F +LL + KV+  + W+  ++K+  D+R+ LL  +  RK AF+AY R RA   K EK + AK   A    L++EA +  +          ++ +D+R K    +  KE    F+     + +  ++EK  +R + +  +V LL+E E++R +S W+ V++++ +D  RY    L SE ++ LF +H K   +   E E + + LE+EA
Sbjct:  568 LEERIKQFRQLLEDKKVSATSTWEKELSKIVFDQRYLLLSAV-ERKAAFDAYCRERAEIEKEEKRKKAKEAKAEFYKLLDEAKLHGKSTFSSFSTNSKWAKDQRFKAVEKVRDKEA--YFKDFVEQLYKKEKEEKRKERDKAKECFVALLKEQEYLRRNSVWAVVKKKIDKDE-RYRNKNLDSETRQKLFDEHAKTCPEPTEEEEAEAKRLEEEA 778
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93467.21584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1I8BEE2_MELHA1.580e-1130.23Uncharacterized protein n=4 Tax=Meloidogyne TaxID=... [more]
A0A6V7WY88_9BILA1.710e-1130.2340S ribosomal protein S21 n=3 Tax=Meloidogyne ente... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93467contigM-pyrifera_M_contig93467:1..744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score75.5
Seed ortholog evalue3.9e-11
Seed eggNOG ortholog588596.U9U2T0
KEGG koko:K12824
KEGG Pathwayko03040,ko04212,map03040,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005685,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071004,GO:0071010,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.FF domain protein
EggNOG OGs38B8V@33154,3NXVM@4751,KOG0155@1,KOG0155@2759
COG Functional cat.K
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Exons1
Model size744
Cds size744
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816847.22962-CDS-M-pyrifera_M_contig93467:0..7441622816847.22962-CDS-M-pyrifera_M_contig93467:0..744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93467 1..744 -
1692278213.3597648-CDS-M-pyrifera_M_contig93467:0..7441692278213.3597648-CDS-M-pyrifera_M_contig93467:0..744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93467 1..744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93467.21584.1prot_M-pyrifera_M_contig93467.21584.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93467 1..744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93467.21584.1

>prot_M-pyrifera_M_contig93467.21584.1 ID=prot_M-pyrifera_M_contig93467.21584.1|Name=mRNA_M-pyrifera_M_contig93467.21584.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=248bp
AAKKEREKEEKRELAKKVKVFHELLTEMKVTQFTMWDSIVTKLAKDERFS
LLPTMGARKEAFEAYARGRATARKVEKAQAAKALAALVEEAVKKEDILEV
KEFEKRYGQDERLKKYSSLSAKEIKEAFEKVAGPIREARRKEKNVDRAEG
RHIYVGLLQECEWIRHDSHWSDVRRRLRRDSARYSRCGLASEEKEDLFYD
HLKRLQKARERERKLRNLEDEARRRRERESRELEHRRRVRERTEAIEN
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mRNA from alignment at M-pyrifera_M_contig93467:1..744-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93467.21584.1 ID=mRNA_M-pyrifera_M_contig93467.21584.1|Name=mRNA_M-pyrifera_M_contig93467.21584.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig93467:1..744- (Macrocystis pyrifera P11B4 male)
GCAGCCAAGAAGGAGAGAGAGAAAGAGGAGAAGAGGGAGTTGGCAAAGAA
GGTGAAGGTGTTCCATGAGCTCCTCACTGAGATGAAAGTGACGCAGTTCA
CGATGTGGGACTCGATCGTCACGAAGCTGGCCAAGGACGAGCGCTTCTCT
CTCCTGCCAACTATGGGAGCGAGGAAAGAGGCCTTTGAAGCCTATGCCAG
AGGGAGGGCCACTGCCAGAAAGGTGGAGAAGGCCCAAGCTGCCAAGGCGC
TAGCTGCTCTTGTCGAGGAGGCTGTGAAGAAGGAGGACATCCTAGAGGTG
AAGGAATTCGAGAAGAGGTACGGCCAGGACGAGAGGCTCAAGAAATACTC
GTCTCTGTCTGCCAAGGAAATCAAGGAGGCGTTTGAGAAGGTCGCTGGCC
CTATCAGAGAGGCGAGGCGGAAGGAGAAGAATGTAGACAGAGCAGAAGGC
CGCCACATCTACGTGGGGCTCTTGCAGGAGTGTGAATGGATTCGCCATGA
CAGCCATTGGTCTGATGTGAGGAGAAGGCTGAGGAGAGACAGCGCCCGGT
ACTCGCGCTGTGGCCTCGCCTCAGAGGAGAAGGAGGACCTCTTCTATGAC
CATCTCAAGCGTCTGCAGAAGGCACGTGAGCGCGAGAGAAAGCTCAGAAA
CCTCGAGGATGAGGCGAGGAGGAGAAGAGAGAGGGAGAGCAGAGAACTTG
AGCACAGGAGGAGAGTACGGGAGAGGACAGAGGCAATCGAGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93467:1..744-

>mRNA_M-pyrifera_M_contig93467.21584.1 ID=mRNA_M-pyrifera_M_contig93467.21584.1|Name=mRNA_M-pyrifera_M_contig93467.21584.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1488bp|location=Sequence derived from alignment at M-pyrifera_M_contig93467:1..744- (Macrocystis pyrifera P11B4 male)
GCAGCCAAGAAGGAGAGAGAGAAAGAGGAGAAGAGGGAGTTGGCAAAGAA
GGTGAAGGTGTTCCATGAGCTCCTCACTGAGATGAAAGTGACGCAGTTCA
CGATGTGGGACTCGATCGTCACGAAGCTGGCCAAGGACGAGCGCTTCTCT
CTCCTGCCAACTATGGGAGCGAGGAAAGAGGCCTTTGAAGCCTATGCCAG
AGGGAGGGCCACTGCCAGAAAGGTGGAGAAGGCCCAAGCTGCCAAGGCGC
TAGCTGCTCTTGTCGAGGAGGCTGTGAAGAAGGAGGACATCCTAGAGGTG
AAGGAATTCGAGAAGAGGTACGGCCAGGACGAGAGGCTCAAGAAATACTC
GTCTCTGTCTGCCAAGGAAATCAAGGAGGCGTTTGAGAAGGTCGCTGGCC
CTATCAGAGAGGCGAGGCGGAAGGAGAAGAATGTAGACAGAGCAGAAGGC
CGCCACATCTACGTGGGGCTCTTGCAGGAGTGTGAATGGATTCGCCATGA
CAGCCATTGGTCTGATGTGAGGAGAAGGCTGAGGAGAGACAGCGCCCGGT
ACTCGCGCTGTGGCCTCGCCTCAGAGGAGAAGGAGGACCTCTTCTATGAC
CATCTCAAGCGTCTGCAGAAGGCACGTGAGCGCGAGAGAAAGCTCAGAAA
CCTCGAGGATGAGGCGAGGAGGAGAAGAGAGAGGGAGAGCAGAGAACTTG
AGCACAGGAGGAGAGTACGGGAGAGGACAGAGGCAATCGAGAACGCAGCC
AAGAAGGAGAGAGAGAAAGAGGAGAAGAGGGAGTTGGCAAAGAAGGTGAA
GGTGTTCCATGAGCTCCTCACTGAGATGAAAGTGACGCAGTTCACGATGT
GGGACTCGATCGTCACGAAGCTGGCCAAGGACGAGCGCTTCTCTCTCCTG
CCAACTATGGGAGCGAGGAAAGAGGCCTTTGAAGCCTATGCCAGAGGGAG
GGCCACTGCCAGAAAGGTGGAGAAGGCCCAAGCTGCCAAGGCGCTAGCTG
CTCTTGTCGAGGAGGCTGTGAAGAAGGAGGACATCCTAGAGGTGAAGGAA
TTCGAGAAGAGGTACGGCCAGGACGAGAGGCTCAAGAAATACTCGTCTCT
GTCTGCCAAGGAAATCAAGGAGGCGTTTGAGAAGGTCGCTGGCCCTATCA
GAGAGGCGAGGCGGAAGGAGAAGAATGTAGACAGAGCAGAAGGCCGCCAC
ATCTACGTGGGGCTCTTGCAGGAGTGTGAATGGATTCGCCATGACAGCCA
TTGGTCTGATGTGAGGAGAAGGCTGAGGAGAGACAGCGCCCGGTACTCGC
GCTGTGGCCTCGCCTCAGAGGAGAAGGAGGACCTCTTCTATGACCATCTC
AAGCGTCTGCAGAAGGCACGTGAGCGCGAGAGAAAGCTCAGAAACCTCGA
GGATGAGGCGAGGAGGAGAAGAGAGAGGGAGAGCAGAGAACTTGAGCACA
GGAGGAGAGTACGGGAGAGGACAGAGGCAATCGAGAAC
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