mRNA_M-pyrifera_M_contig9345.21578.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9345.21578.1
Unique NamemRNA_M-pyrifera_M_contig9345.21578.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9345.21578.1 vs. uniprot
Match: D7G781_ECTSI (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G781_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 3.610e-19
Identity = 38/49 (77.55%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    4 QAIPERPNFVRASFGPPLLNLLGRRGLTVRAGPKSSVALAATYVDERVR 150
            +AIP++PNFV+ASFGPPL+N LG+RGLT+R+GPKSSV LAATYVDER+R
Sbjct:  190 KAIPDKPNFVKASFGPPLINFLGKRGLTIRSGPKSSVRLAATYVDERIR 238
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BLAST of mRNA_M-pyrifera_M_contig9345.21578.1 vs. uniprot
Match: A0A6H5JIG4_9PHAE (PAP_fibrillin domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.400e-18
Identity = 37/49 (75.51%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    4 QAIPERPNFVRASFGPPLLNLLGRRGLTVRAGPKSSVALAATYVDERVR 150
            +AIP++PNFV+ASFGPPL+N LG+ GLT+R+GPKSSV LAATYVDER R
Sbjct:  192 KAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERDR 240
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9345.21578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G781_ECTSI3.610e-1977.55PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JIG4_9PHAE5.400e-1875.51PAP_fibrillin domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9345contigM-pyrifera_M_contig9345:11014..11163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue9.1e-16
Seed eggNOG ortholog2880.D7G781
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.PAP_fibrillin
EggNOG OGs28JTJ@1,2QS7D@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816846.9932165-CDS-M-pyrifera_M_contig9345:11013..111631622816846.9932165-CDS-M-pyrifera_M_contig9345:11013..11163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9345 11014..11163 -
1692278213.2553756-CDS-M-pyrifera_M_contig9345:11013..111631692278213.2553756-CDS-M-pyrifera_M_contig9345:11013..11163Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9345 11014..11163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9345.21578.1prot_M-pyrifera_M_contig9345.21578.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9345 11014..11163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9345.21578.1

>prot_M-pyrifera_M_contig9345.21578.1 ID=prot_M-pyrifera_M_contig9345.21578.1|Name=mRNA_M-pyrifera_M_contig9345.21578.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
LQAIPERPNFVRASFGPPLLNLLGRRGLTVRAGPKSSVALAATYVDERVR
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mRNA from alignment at M-pyrifera_M_contig9345:11014..11163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9345.21578.1 ID=mRNA_M-pyrifera_M_contig9345.21578.1|Name=mRNA_M-pyrifera_M_contig9345.21578.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig9345:11014..11163- (Macrocystis pyrifera P11B4 male)
CTGCAGGCGATCCCGGAGAGGCCTAACTTTGTTAGGGCTTCCTTTGGACC
GCCGCTGCTGAACTTGCTCGGGAGGCGCGGCCTCACGGTCCGCGCGGGGC
CGAAGAGCAGCGTCGCATTGGCGGCCACCTACGTGGACGAGCGGGTGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9345:11014..11163-

>mRNA_M-pyrifera_M_contig9345.21578.1 ID=mRNA_M-pyrifera_M_contig9345.21578.1|Name=mRNA_M-pyrifera_M_contig9345.21578.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig9345:11014..11163- (Macrocystis pyrifera P11B4 male)
CTGCAGGCGATCCCGGAGAGGCCTAACTTTGTTAGGGCTTCCTTTGGACC
GCCGCTGCTGAACTTGCTCGGGAGGCGCGGCCTCACGGTCCGCGCGGGGC
CGAAGAGCAGCGTCGCATTGGCGGCCACCTACGTGGACGAGCGGGTGAGG
CTGCAGGCGATCCCGGAGAGGCCTAACTTTGTTAGGGCTTCCTTTGGACC
GCCGCTGCTGAACTTGCTCGGGAGGCGCGGCCTCACGGTCCGCGCGGGGC
CGAAGAGCAGCGTCGCATTGGCGGCCACCTACGTGGACGAGCGGGTGAGG
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