mRNA_M-pyrifera_M_contig93405.21568.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93405.21568.1
Unique NamemRNA_M-pyrifera_M_contig93405.21568.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93405.21568.1 vs. uniprot
Match: A0A7X7F1B7_9BACT (ABC transporter permease subunit n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7X7F1B7_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 7.070e-5
Identity = 29/94 (30.85%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   10 LLWKDWRLSRTVLLAGIITLVLPYAIPVWVQWRGEGALEA-FAVATTQTLWLSCIVFAIWGGYIVSAERASQTDRFLQSLPIRNTSITGSRLLL 288
            L+WK++RL+R +L AG+  L+LP+AI +    R  G     F  +   + +++ ++ A+ GG  ++ ER  ++  FL +LP+       S+L+L
Sbjct:    4 LIWKEYRLNRLILGAGLFLLLLPHAIALVNGLRHLGNWSHYFEQSMMFSFYVTHVILALLGGNSIAGERGDRSAEFLATLPLSRRRNLASKLVL 97
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93405.21568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X7F1B7_9BACT7.070e-530.85ABC transporter permease subunit n=1 Tax=Pirellula... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93405contigM-pyrifera_M_contig93405:170..496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816846.225756-CDS-M-pyrifera_M_contig93405:169..4961622816846.225756-CDS-M-pyrifera_M_contig93405:169..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93405 170..496 -
1692278212.7755992-CDS-M-pyrifera_M_contig93405:169..4961692278212.7755992-CDS-M-pyrifera_M_contig93405:169..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93405 170..496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93405.21568.1prot_M-pyrifera_M_contig93405.21568.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93405 170..496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93405.21568.1

>prot_M-pyrifera_M_contig93405.21568.1 ID=prot_M-pyrifera_M_contig93405.21568.1|Name=mRNA_M-pyrifera_M_contig93405.21568.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
LRALLWKDWRLSRTVLLAGIITLVLPYAIPVWVQWRGEGALEAFAVATTQ
TLWLSCIVFAIWGGYIVSAERASQTDRFLQSLPIRNTSITGSRLLLTFVP
ALIIFLANI
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mRNA from alignment at M-pyrifera_M_contig93405:170..496-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93405.21568.1 ID=mRNA_M-pyrifera_M_contig93405.21568.1|Name=mRNA_M-pyrifera_M_contig93405.21568.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig93405:170..496- (Macrocystis pyrifera P11B4 male)
CTTCGTGCACTGCTCTGGAAAGACTGGCGGCTCTCGCGGACGGTCTTGCT
AGCCGGGATCATAACGCTTGTTTTGCCGTATGCGATTCCGGTCTGGGTCC
AATGGCGCGGTGAGGGAGCCTTGGAAGCATTTGCAGTTGCGACGACGCAG
ACCTTGTGGCTTAGCTGCATTGTGTTCGCGATTTGGGGCGGTTACATTGT
GTCCGCTGAACGCGCGTCGCAAACTGACCGGTTCTTGCAGAGCCTTCCCA
TCCGCAATACTTCAATAACAGGAAGTCGCCTGCTCCTTACATTCGTTCCC
GCTTTGATCATTTTTCTCGCGAACATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93405:170..496-

>mRNA_M-pyrifera_M_contig93405.21568.1 ID=mRNA_M-pyrifera_M_contig93405.21568.1|Name=mRNA_M-pyrifera_M_contig93405.21568.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig93405:170..496- (Macrocystis pyrifera P11B4 male)
CTTCGTGCACTGCTCTGGAAAGACTGGCGGCTCTCGCGGACGGTCTTGCT
AGCCGGGATCATAACGCTTGTTTTGCCGTATGCGATTCCGGTCTGGGTCC
AATGGCGCGGTGAGGGAGCCTTGGAAGCATTTGCAGTTGCGACGACGCAG
ACCTTGTGGCTTAGCTGCATTGTGTTCGCGATTTGGGGCGGTTACATTGT
GTCCGCTGAACGCGCGTCGCAAACTGACCGGTTCTTGCAGAGCCTTCCCA
TCCGCAATACTTCAATAACAGGAAGTCGCCTGCTCCTTACATTCGTTCCC
GCTTTGATCATTTTTCTCGCGAACATCCTTCGTGCACTGCTCTGGAAAGA
CTGGCGGCTCTCGCGGACGGTCTTGCTAGCCGGGATCATAACGCTTGTTT
TGCCGTATGCGATTCCGGTCTGGGTCCAATGGCGCGGTGAGGGAGCCTTG
GAAGCATTTGCAGTTGCGACGACGCAGACCTTGTGGCTTAGCTGCATTGT
GTTCGCGATTTGGGGCGGTTACATTGTGTCCGCTGAACGCGCGTCGCAAA
CTGACCGGTTCTTGCAGAGCCTTCCCATCCGCAATACTTCAATAACAGGA
AGTCGCCTGCTCCTTACATTCGTTCCCGCTTTGATCATTTTTCTCGCGAA
CATC
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