mRNA_M-pyrifera_M_contig93394.21563.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93394.21563.1
Unique NamemRNA_M-pyrifera_M_contig93394.21563.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93394.21563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93394contigM-pyrifera_M_contig93394:1..717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size717
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.878291-CDS-M-pyrifera_M_contig93394:0..7171622816845.878291-CDS-M-pyrifera_M_contig93394:0..717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93394 1..717 -
1692278212.566928-CDS-M-pyrifera_M_contig93394:0..7171692278212.566928-CDS-M-pyrifera_M_contig93394:0..717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93394 1..717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93394.21563.1prot_M-pyrifera_M_contig93394.21563.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93394 1..717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93394.21563.1

>prot_M-pyrifera_M_contig93394.21563.1 ID=prot_M-pyrifera_M_contig93394.21563.1|Name=mRNA_M-pyrifera_M_contig93394.21563.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=239bp
SFNQALTRATNHAEIADCYQKLAYTYIQTASIDKAIIYGHKALQAARATK
DAGRIAGAYSKLGTAHKQNDELRLAATYYLKALNQVKGNKEYETWMPTMY
NNLGLLFKAMHIYDSAAYYLNASMADLKKFGFKQSYDYVAINLVNLYNKQ
GNYKQAIDLLGSLDHNTPNQRMQVELLAEGGRALIGLGSIDDALPKLTRA
KTIAQELSLTDHLIELDQSISDLYKLRGDYKSALLYFEQ
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mRNA from alignment at M-pyrifera_M_contig93394:1..717-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93394.21563.1 ID=mRNA_M-pyrifera_M_contig93394.21563.1|Name=mRNA_M-pyrifera_M_contig93394.21563.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=717bp|location=Sequence derived from alignment at M-pyrifera_M_contig93394:1..717- (Macrocystis pyrifera P11B4 male)
TCTTTCAATCAGGCACTTACACGCGCAACGAATCATGCGGAAATAGCGGA
CTGTTATCAAAAACTGGCTTATACCTATATACAAACTGCTTCCATTGATA
AGGCTATAATATATGGGCACAAGGCTTTACAAGCTGCAAGGGCTACAAAA
GATGCTGGACGAATTGCGGGTGCATATAGTAAATTGGGGACTGCACATAA
ACAAAATGATGAATTAAGATTGGCTGCTACATATTATTTGAAAGCTCTAA
ATCAGGTCAAAGGAAATAAAGAATATGAAACCTGGATGCCCACTATGTAT
AATAACTTAGGCCTTCTTTTTAAAGCAATGCATATATATGATTCGGCAGC
TTATTATCTCAATGCATCTATGGCGGATTTAAAGAAATTTGGCTTCAAGC
AGAGTTATGATTATGTAGCAATCAACTTAGTCAACCTTTACAATAAACAA
GGAAATTATAAGCAAGCGATTGATTTGCTTGGATCATTAGATCATAATAC
GCCAAATCAGCGCATGCAGGTTGAGTTACTGGCAGAGGGAGGAAGAGCAT
TAATTGGCCTTGGAAGCATCGATGATGCATTGCCAAAATTGACAAGAGCG
AAAACTATCGCACAAGAACTGAGTCTGACTGATCATCTGATAGAGTTGGA
TCAATCTATATCAGATCTTTATAAACTTCGAGGGGATTACAAAAGTGCGC
TTTTATATTTTGAACAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93394:1..717-

>mRNA_M-pyrifera_M_contig93394.21563.1 ID=mRNA_M-pyrifera_M_contig93394.21563.1|Name=mRNA_M-pyrifera_M_contig93394.21563.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1434bp|location=Sequence derived from alignment at M-pyrifera_M_contig93394:1..717- (Macrocystis pyrifera P11B4 male)
TCTTTCAATCAGGCACTTACACGCGCAACGAATCATGCGGAAATAGCGGA
CTGTTATCAAAAACTGGCTTATACCTATATACAAACTGCTTCCATTGATA
AGGCTATAATATATGGGCACAAGGCTTTACAAGCTGCAAGGGCTACAAAA
GATGCTGGACGAATTGCGGGTGCATATAGTAAATTGGGGACTGCACATAA
ACAAAATGATGAATTAAGATTGGCTGCTACATATTATTTGAAAGCTCTAA
ATCAGGTCAAAGGAAATAAAGAATATGAAACCTGGATGCCCACTATGTAT
AATAACTTAGGCCTTCTTTTTAAAGCAATGCATATATATGATTCGGCAGC
TTATTATCTCAATGCATCTATGGCGGATTTAAAGAAATTTGGCTTCAAGC
AGAGTTATGATTATGTAGCAATCAACTTAGTCAACCTTTACAATAAACAA
GGAAATTATAAGCAAGCGATTGATTTGCTTGGATCATTAGATCATAATAC
GCCAAATCAGCGCATGCAGGTTGAGTTACTGGCAGAGGGAGGAAGAGCAT
TAATTGGCCTTGGAAGCATCGATGATGCATTGCCAAAATTGACAAGAGCG
AAAACTATCGCACAAGAACTGAGTCTGACTGATCATCTGATAGAGTTGGA
TCAATCTATATCAGATCTTTATAAACTTCGAGGGGATTACAAAAGTGCGC
TTTTATATTTTGAACAATCTTTCAATCAGGCACTTACACGCGCAACGAAT
CATGCGGAAATAGCGGACTGTTATCAAAAACTGGCTTATACCTATATACA
AACTGCTTCCATTGATAAGGCTATAATATATGGGCACAAGGCTTTACAAG
CTGCAAGGGCTACAAAAGATGCTGGACGAATTGCGGGTGCATATAGTAAA
TTGGGGACTGCACATAAACAAAATGATGAATTAAGATTGGCTGCTACATA
TTATTTGAAAGCTCTAAATCAGGTCAAAGGAAATAAAGAATATGAAACCT
GGATGCCCACTATGTATAATAACTTAGGCCTTCTTTTTAAAGCAATGCAT
ATATATGATTCGGCAGCTTATTATCTCAATGCATCTATGGCGGATTTAAA
GAAATTTGGCTTCAAGCAGAGTTATGATTATGTAGCAATCAACTTAGTCA
ACCTTTACAATAAACAAGGAAATTATAAGCAAGCGATTGATTTGCTTGGA
TCATTAGATCATAATACGCCAAATCAGCGCATGCAGGTTGAGTTACTGGC
AGAGGGAGGAAGAGCATTAATTGGCCTTGGAAGCATCGATGATGCATTGC
CAAAATTGACAAGAGCGAAAACTATCGCACAAGAACTGAGTCTGACTGAT
CATCTGATAGAGTTGGATCAATCTATATCAGATCTTTATAAACTTCGAGG
GGATTACAAAAGTGCGCTTTTATATTTTGAACAA
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