mRNA_M-pyrifera_M_contig93377.21557.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93377.21557.1
Unique NamemRNA_M-pyrifera_M_contig93377.21557.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93377.21557.1 vs. uniprot
Match: A0A7S0LW48_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LW48_9CRYP)

HSP 1 Score: 54.3 bits (129), Expect = 2.640e-6
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:    4 LPSNLMWHAQTVLERNNVAVVRCMGEADFQLSADGADPAIGAYAVLSNDSDFFLSPGIRYIPYETVVTKLEMKR---IYCSVFDRDLVMKELGLTSAEGLFLFSALAGNDYT 330
            LP      A   L + +V ++ C  EAD +L  + A    GAYA+L NDSDF+L  G R+IP E     LE+     +   VF  +LV + L L+S + L   +AL GND T
Sbjct:  150 LPPGCTKQAIHTLRKMDVRILTCEEEADNELVRNLACIP-GAYAILGNDSDFYLMRGARFIPLE----HLEVTGAGPVCARVFSPELVAESLCLSS-DRLHELAALCGNDIT 255
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93377.21557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0LW48_9CRYP2.640e-638.39Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93377contigM-pyrifera_M_contig93377:305..679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93377.21557.1prot_M-pyrifera_M_contig93377.21557.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93377 305..661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.621517-CDS-M-pyrifera_M_contig93377:304..4151622816845.621517-CDS-M-pyrifera_M_contig93377:304..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93377 305..415 -
1692278212.4432662-CDS-M-pyrifera_M_contig93377:304..4151692278212.4432662-CDS-M-pyrifera_M_contig93377:304..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93377 305..415 -
1622816845.632941-CDS-M-pyrifera_M_contig93377:460..6611622816845.632941-CDS-M-pyrifera_M_contig93377:460..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93377 461..661 -
1692278212.4556746-CDS-M-pyrifera_M_contig93377:460..6611692278212.4556746-CDS-M-pyrifera_M_contig93377:460..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93377 461..661 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.6429102-UTR-M-pyrifera_M_contig93377:661..6791622816845.6429102-UTR-M-pyrifera_M_contig93377:661..679Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93377 662..679 -
1692278212.4653735-UTR-M-pyrifera_M_contig93377:661..6791692278212.4653735-UTR-M-pyrifera_M_contig93377:661..679Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93377 662..679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93377.21557.1

>prot_M-pyrifera_M_contig93377.21557.1 ID=prot_M-pyrifera_M_contig93377.21557.1|Name=mRNA_M-pyrifera_M_contig93377.21557.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MWHAQTVLERNNVAVVRCMGEADFQLSADGADPAIGAYAVLSNDSDFFLS
PGIRYIPYETVVTKLEMKRIYCSVFDRDLVMKELGLTSAEGLFLFSALAG
NDYT
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mRNA from alignment at M-pyrifera_M_contig93377:305..679-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93377.21557.1 ID=mRNA_M-pyrifera_M_contig93377.21557.1|Name=mRNA_M-pyrifera_M_contig93377.21557.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig93377:305..679- (Macrocystis pyrifera P11B4 male)
ATCCTCCCGAGCAACCTCATGTGGCATGCGCAGACTGTGCTGGAGAGGAA
CAACGTGGCAGTCGTGCGTTGCATGGGAGAGGCAGACTTCCAGCTCAGTG
CAGACGGAGCAGATCCAGCGATTGGGGCCTATGCTGTGCTCTCGAACGAC
AGCGACTTCTTTCTATCCCCAGGCATCCGCTACATCCCTTATGAGACAGT
CGTGACCAAGCTCGAGATGGTGGCCGACTCTCCTGCTGGGATCAGCGCTG
CCTCGCTCAGACAGAAGCGGATCTATTGCTCTGTCTTTGACCGCGATCTG
GTGATGAAGGAGCTGGGCCTCACCAGCGCCGAAGGCCTGTTCCTCTTCTC
GGCCCTTGCAGGCAACGACTACACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93377:305..679-

>mRNA_M-pyrifera_M_contig93377.21557.1 ID=mRNA_M-pyrifera_M_contig93377.21557.1|Name=mRNA_M-pyrifera_M_contig93377.21557.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig93377:305..679- (Macrocystis pyrifera P11B4 male)
ATGTGGCATGCGCAGACTGTGCTGGAGAGGAACAACGTGGCAGTCGTGCG
TTGCATGGGAGAGGCAGACTTCCAGCTCAGTGCAGACGGAGCAGATCCAG
CGATTGGGGCCTATGCTGTGCTCTCGAACGACAGCGACTTCTTTCTATCC
CCAGGCATCCGCTACATCCCTTATGAGACAGTCGTGACCAAGCTCGAGAT
GATGTGGCATGCGCAGACTGTGCTGGAGAGGAACAACGTGGCAGTCGTGC
GTTGCATGGGAGAGGCAGACTTCCAGCTCAGTGCAGACGGAGCAGATCCA
GCGATTGGGGCCTATGCTGTGCTCTCGAACGACAGCGACTTCTTTCTATC
CCCAGGCATCCGCTACATCCCTTATGAGACAGTCGTGACCAAGCTCGAGA
TGAAGCGGATCTATTGCTCTGTCTTTGACCGCGATCTGGTGATGAAGGAG
CTGGGCCTCACCAGCGCCGAAGGCCTGTTCCTCTTCTCGGCCCTTGCAGG
CAACGACTACACCAAGCGGATCTATTGCTCTGTCTTTGACCGCGATCTGG
TGATGAAGGAGCTGGGCCTCACCAGCGCCGAAGGCCTGTTCCTCTTCTCG
GCCCTTGCAGGCAACGACTACACC
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