mRNA_M-pyrifera_M_contig93319.21551.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93319.21551.1
Unique NamemRNA_M-pyrifera_M_contig93319.21551.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93319.21551.1 vs. uniprot
Match: A0A1M5CRY8_9BACT (Uncharacterized protein n=1 Tax=Cnuella takakiae TaxID=1302690 RepID=A0A1M5CRY8_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 3.810e-9
Identity = 32/75 (42.67%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   46 NFKDEIARIISLYVPIATGVLGVVGLILVGIFIYK-----CEYDKAVDT----LKYVFTALLPIWGTWIGTVLAF 243
            + KD +AR I++YV + TGVLG +G+ LV + +++      E D+ VD     L++VF ++LP+ GTW+GT+LAF
Sbjct:    6 DIKDLLARKITMYVLVCTGVLGTLGIALVLVVLFRKGDTAAETDQMVDNGLKVLQFVFASILPLLGTWLGTILAF 80
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BLAST of mRNA_M-pyrifera_M_contig93319.21551.1 vs. uniprot
Match: A0A5B8UKV0_9BACT (Uncharacterized protein n=1 Tax=Flavisolibacter ginsenosidimutans TaxID=661481 RepID=A0A5B8UKV0_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.040e-6
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:   22 NTEATTNGN-FKDEIARIISLYVPIATGVLGVVGLIL--VGIFIYKCEYDKAVDTLKYVFTALLPIWGTWIGTVLAF 243
            N  AT   N  ++++AR +S+ V + T VLGV+G+ +  V +   K +   A D L+ +F+A+LP++GTWIGT+LA+
Sbjct:    6 NNPATQTANPVQEKVARTVSIIVLVGTCVLGVLGMAIAIVALTTKKEDIAGAKDILQILFSAILPLFGTWIGTILAY 82
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93319.21551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1M5CRY8_9BACT3.810e-942.67Uncharacterized protein n=1 Tax=Cnuella takakiae T... [more]
A0A5B8UKV0_9BACT1.040e-640.26Uncharacterized protein n=1 Tax=Flavisolibacter gi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93319contigM-pyrifera_M_contig93319:513..755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816845.2694902-CDS-M-pyrifera_M_contig93319:512..7551622816845.2694902-CDS-M-pyrifera_M_contig93319:512..755Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93319 513..755 +
1692278212.2542362-CDS-M-pyrifera_M_contig93319:512..7551692278212.2542362-CDS-M-pyrifera_M_contig93319:512..755Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93319 513..755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93319.21551.1prot_M-pyrifera_M_contig93319.21551.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93319 513..755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93319.21551.1

>prot_M-pyrifera_M_contig93319.21551.1 ID=prot_M-pyrifera_M_contig93319.21551.1|Name=mRNA_M-pyrifera_M_contig93319.21551.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MSNPTPPNTEATTNGNFKDEIARIISLYVPIATGVLGVVGLILVGIFIYK
CEYDKAVDTLKYVFTALLPIWGTWIGTVLAF
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mRNA from alignment at M-pyrifera_M_contig93319:513..755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93319.21551.1 ID=mRNA_M-pyrifera_M_contig93319.21551.1|Name=mRNA_M-pyrifera_M_contig93319.21551.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig93319:513..755+ (Macrocystis pyrifera P11B4 male)
ATGAGCAATCCAACACCTCCAAACACTGAAGCTACAACCAACGGTAATTT
TAAAGATGAAATTGCCAGAATAATTTCCCTATACGTGCCCATTGCCACCG
GGGTGTTGGGTGTTGTTGGGTTGATTCTGGTTGGTATATTTATTTACAAA
TGTGAATACGATAAGGCCGTTGATACCTTAAAATATGTATTCACAGCGCT
ACTGCCTATTTGGGGTACCTGGATAGGCACTGTGCTCGCCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93319:513..755+

>mRNA_M-pyrifera_M_contig93319.21551.1 ID=mRNA_M-pyrifera_M_contig93319.21551.1|Name=mRNA_M-pyrifera_M_contig93319.21551.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig93319:513..755+ (Macrocystis pyrifera P11B4 male)
ATGAGCAATCCAACACCTCCAAACACTGAAGCTACAACCAACGGTAATTT
TAAAGATGAAATTGCCAGAATAATTTCCCTATACGTGCCCATTGCCACCG
GGGTGTTGGGTGTTGTTGGGTTGATTCTGGTTGGTATATTTATTTACAAA
TGTGAATACGATAAGGCCGTTGATACCTTAAAATATGTATTCACAGCGCT
ACTGCCTATTTGGGGTACCTGGATAGGCACTGTGCTCGCCTTTATGAGCA
ATCCAACACCTCCAAACACTGAAGCTACAACCAACGGTAATTTTAAAGAT
GAAATTGCCAGAATAATTTCCCTATACGTGCCCATTGCCACCGGGGTGTT
GGGTGTTGTTGGGTTGATTCTGGTTGGTATATTTATTTACAAATGTGAAT
ACGATAAGGCCGTTGATACCTTAAAATATGTATTCACAGCGCTACTGCCT
ATTTGGGGTACCTGGATAGGCACTGTGCTCGCCTTT
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