mRNA_M-pyrifera_M_contig93293.21540.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93293.21540.1
Unique NamemRNA_M-pyrifera_M_contig93293.21540.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93293.21540.1 vs. uniprot
Match: A0A0L0DDZ8_THETB (Translocon-associated protein subunit delta n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DDZ8_THETB)

HSP 1 Score: 144 bits (362), Expect = 1.860e-35
Identity = 92/265 (34.72%), Postives = 144/265 (54.34%), Query Frame = 1 
Query:    1 ANGESIVLQNYDSAEGQLYDDAEPVAVSVQTDLHLADVVEQPKGGDFFYGNVISFQFEVKDHVSGEYVSAGERGNA----------YMVLTHTDAELGGRTFTSVKVPAEEGDGSS-FVINWEINPNAVNGASTLQLVAEDADENQVELLEESGKNAVQLQVNIGGDLDIESSTYSSTDFFTSHTAHIVSFTMECQGKALKDAKLRSSV--IYGGAA--VYDAPVSY--DEEGYSISWTTDHRASPSGTYTVRVFRETDQSKAEE 744
            A G ++ L NYDSAE  L++DA P++V+V   L ++     P   DF+YGNV+ F+F V D +SG+ +SA +  +A          Y+V++H DA   GR F SV+  A   D +  F I+W INPNAV G   L++ A DA   Q+ + + + +N V+  + IGG++ + S  YS        T  +  F++ CQGK L +A+LR SV  +  GA   ++  PV+     + Y +S+        +G Y +  +RE D+ +A E
Sbjct:  658 AAGNAVELDNYDSAEAALWEDASPLSVAVPVHLEMSSAEGAPTKKDFYYGNVVEFEFTVVDTLSGKSLSAADVASAVADDAVAPGMYLVISHDDAVRAGRRFVSVRERATARDAADGFAISWTINPNAVQGDGILEVAAYDAAGTQLPVYKPNSENKVEYPIVIGGEIKVTSEPYSFDAERRDTTVFVSEFSLGCQGKKLANAQLRCSVFKVVDGAKAELFQVPVALGASNDAYQVSFAVP-TPDAAGDYELAFYREVDRVRAAE 921
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93293.21540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0L0DDZ8_THETB1.860e-3534.72Translocon-associated protein subunit delta n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93293contigM-pyrifera_M_contig93293:1..753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue4.8e-33
Seed eggNOG ortholog529818.AMSG_00680T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2EKSF@1,2SQKE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size753
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.881732-CDS-M-pyrifera_M_contig93293:0..7531622816844.881732-CDS-M-pyrifera_M_contig93293:0..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93293 1..753 -
1692278212.0871258-CDS-M-pyrifera_M_contig93293:0..7531692278212.0871258-CDS-M-pyrifera_M_contig93293:0..753Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93293 1..753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93293.21540.1prot_M-pyrifera_M_contig93293.21540.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93293 1..753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93293.21540.1

>prot_M-pyrifera_M_contig93293.21540.1 ID=prot_M-pyrifera_M_contig93293.21540.1|Name=mRNA_M-pyrifera_M_contig93293.21540.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=251bp
ANGESIVLQNYDSAEGQLYDDAEPVAVSVQTDLHLADVVEQPKGGDFFYG
NVISFQFEVKDHVSGEYVSAGERGNAYMVLTHTDAELGGRTFTSVKVPAE
EGDGSSFVINWEINPNAVNGASTLQLVAEDADENQVELLEESGKNAVQLQ
VNIGGDLDIESSTYSSTDFFTSHTAHIVSFTMECQGKALKDAKLRSSVIY
GGAAVYDAPVSYDEEGYSISWTTDHRASPSGTYTVRVFRETDQSKAEENE
E
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mRNA from alignment at M-pyrifera_M_contig93293:1..753-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93293.21540.1 ID=mRNA_M-pyrifera_M_contig93293.21540.1|Name=mRNA_M-pyrifera_M_contig93293.21540.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=753bp|location=Sequence derived from alignment at M-pyrifera_M_contig93293:1..753- (Macrocystis pyrifera P11B4 male)
GCCAACGGCGAGAGCATCGTCCTTCAGAACTACGATTCTGCTGAGGGCCA
GCTTTACGACGACGCTGAGCCTGTTGCCGTCTCCGTTCAGACCGATCTTC
ACCTGGCGGACGTTGTCGAGCAGCCTAAGGGCGGCGACTTCTTCTACGGT
AACGTTATCAGCTTCCAGTTCGAGGTCAAGGACCACGTCAGCGGCGAGTA
CGTCTCTGCTGGAGAGCGTGGCAACGCCTACATGGTGCTCACGCACACCG
ACGCTGAGCTCGGTGGCCGCACCTTCACCAGTGTCAAGGTGCCTGCCGAA
GAGGGCGACGGATCTTCCTTCGTCATCAACTGGGAGATCAACCCCAACGC
CGTTAACGGCGCTAGCACCCTGCAGCTGGTCGCCGAGGATGCCGACGAGA
ACCAGGTCGAGCTCCTCGAGGAGTCTGGCAAGAACGCAGTCCAGCTCCAG
GTGAACATTGGTGGCGACCTCGACATCGAGTCCTCCACCTACTCCTCCAC
CGACTTCTTCACCTCGCACACCGCCCACATCGTGTCCTTCACCATGGAGT
GCCAGGGCAAGGCGCTCAAGGATGCGAAGCTGAGGAGCTCCGTGATCTAC
GGTGGCGCCGCGGTCTACGACGCCCCTGTCTCTTATGATGAGGAGGGCTA
CAGCATCAGCTGGACCACCGACCACAGGGCTTCTCCCAGCGGCACTTACA
CTGTTCGTGTCTTCCGCGAGACAGACCAGAGCAAGGCCGAGGAGAACGAG
GAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93293:1..753-

>mRNA_M-pyrifera_M_contig93293.21540.1 ID=mRNA_M-pyrifera_M_contig93293.21540.1|Name=mRNA_M-pyrifera_M_contig93293.21540.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1506bp|location=Sequence derived from alignment at M-pyrifera_M_contig93293:1..753- (Macrocystis pyrifera P11B4 male)
GCCAACGGCGAGAGCATCGTCCTTCAGAACTACGATTCTGCTGAGGGCCA
GCTTTACGACGACGCTGAGCCTGTTGCCGTCTCCGTTCAGACCGATCTTC
ACCTGGCGGACGTTGTCGAGCAGCCTAAGGGCGGCGACTTCTTCTACGGT
AACGTTATCAGCTTCCAGTTCGAGGTCAAGGACCACGTCAGCGGCGAGTA
CGTCTCTGCTGGAGAGCGTGGCAACGCCTACATGGTGCTCACGCACACCG
ACGCTGAGCTCGGTGGCCGCACCTTCACCAGTGTCAAGGTGCCTGCCGAA
GAGGGCGACGGATCTTCCTTCGTCATCAACTGGGAGATCAACCCCAACGC
CGTTAACGGCGCTAGCACCCTGCAGCTGGTCGCCGAGGATGCCGACGAGA
ACCAGGTCGAGCTCCTCGAGGAGTCTGGCAAGAACGCAGTCCAGCTCCAG
GTGAACATTGGTGGCGACCTCGACATCGAGTCCTCCACCTACTCCTCCAC
CGACTTCTTCACCTCGCACACCGCCCACATCGTGTCCTTCACCATGGAGT
GCCAGGGCAAGGCGCTCAAGGATGCGAAGCTGAGGAGCTCCGTGATCTAC
GGTGGCGCCGCGGTCTACGACGCCCCTGTCTCTTATGATGAGGAGGGCTA
CAGCATCAGCTGGACCACCGACCACAGGGCTTCTCCCAGCGGCACTTACA
CTGTTCGTGTCTTCCGCGAGACAGACCAGAGCAAGGCCGAGGAGAACGAG
GAGGCCAACGGCGAGAGCATCGTCCTTCAGAACTACGATTCTGCTGAGGG
CCAGCTTTACGACGACGCTGAGCCTGTTGCCGTCTCCGTTCAGACCGATC
TTCACCTGGCGGACGTTGTCGAGCAGCCTAAGGGCGGCGACTTCTTCTAC
GGTAACGTTATCAGCTTCCAGTTCGAGGTCAAGGACCACGTCAGCGGCGA
GTACGTCTCTGCTGGAGAGCGTGGCAACGCCTACATGGTGCTCACGCACA
CCGACGCTGAGCTCGGTGGCCGCACCTTCACCAGTGTCAAGGTGCCTGCC
GAAGAGGGCGACGGATCTTCCTTCGTCATCAACTGGGAGATCAACCCCAA
CGCCGTTAACGGCGCTAGCACCCTGCAGCTGGTCGCCGAGGATGCCGACG
AGAACCAGGTCGAGCTCCTCGAGGAGTCTGGCAAGAACGCAGTCCAGCTC
CAGGTGAACATTGGTGGCGACCTCGACATCGAGTCCTCCACCTACTCCTC
CACCGACTTCTTCACCTCGCACACCGCCCACATCGTGTCCTTCACCATGG
AGTGCCAGGGCAAGGCGCTCAAGGATGCGAAGCTGAGGAGCTCCGTGATC
TACGGTGGCGCCGCGGTCTACGACGCCCCTGTCTCTTATGATGAGGAGGG
CTACAGCATCAGCTGGACCACCGACCACAGGGCTTCTCCCAGCGGCACTT
ACACTGTTCGTGTCTTCCGCGAGACAGACCAGAGCAAGGCCGAGGAGAAC
GAGGAG
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