mRNA_M-pyrifera_M_contig93228.21530.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93228.21530.1
Unique NamemRNA_M-pyrifera_M_contig93228.21530.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93228.21530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93228contigM-pyrifera_M_contig93228:22..756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size630
Cds size603
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93228.21530.1prot_M-pyrifera_M_contig93228.21530.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93228 22..729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.3836126-CDS-M-pyrifera_M_contig93228:21..1201622816844.3836126-CDS-M-pyrifera_M_contig93228:21..120Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93228 22..120 -
1692278211.827265-CDS-M-pyrifera_M_contig93228:21..1201692278211.827265-CDS-M-pyrifera_M_contig93228:21..120Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93228 22..120 -
1622816844.3944497-CDS-M-pyrifera_M_contig93228:225..7291622816844.3944497-CDS-M-pyrifera_M_contig93228:225..729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93228 226..729 -
1692278211.8402793-CDS-M-pyrifera_M_contig93228:225..7291692278211.8402793-CDS-M-pyrifera_M_contig93228:225..729Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93228 226..729 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.4076457-UTR-M-pyrifera_M_contig93228:729..7561622816844.4076457-UTR-M-pyrifera_M_contig93228:729..756Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93228 730..756 -
1692278211.851061-UTR-M-pyrifera_M_contig93228:729..7561692278211.851061-UTR-M-pyrifera_M_contig93228:729..756Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig93228 730..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93228.21530.1

>prot_M-pyrifera_M_contig93228.21530.1 ID=prot_M-pyrifera_M_contig93228.21530.1|Name=mRNA_M-pyrifera_M_contig93228.21530.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=201bp
MDEAEAARWYRRAAEAGNSGAMLSLGFRYEEGRGVEKDESEAVRWYRRAA
EAGNCRGMTYLRACIDRGCAAELDSAEAARCFRSAAGAGHAKSMLNLGAC
YEAGRGVEKDESEAARWYRRAAGAGHATSMLRLSECLRSGTGTPADADEA
ALWLGRAADAGCVQAMVPLGRLLLGGRRIPSDERRAVFWLRKAAEGGREG
A
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mRNA from alignment at M-pyrifera_M_contig93228:22..756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93228.21530.1 ID=mRNA_M-pyrifera_M_contig93228.21530.1|Name=mRNA_M-pyrifera_M_contig93228.21530.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=735bp|location=Sequence derived from alignment at M-pyrifera_M_contig93228:22..756- (Macrocystis pyrifera P11B4 male)
TGCTATGAGCATGGCGAGGGTGTGGAGATGGACGAGGCAGAGGCTGCTCG
ATGGTACCGGCGCGCTGCTGAAGCTGGAAACAGCGGCGCCATGCTCAGCC
TGGGGTTTCGCTATGAGGAAGGCCGCGGAGTGGAGAAGGACGAGTCAGAG
GCTGTTCGATGGTACCGGCGCGCTGCTGAAGCTGGAAACTGCAGGGGCAT
GACATACCTACGTGCATGCATTGATCGCGGCTGTGCAGCAGAGCTTGACT
CCGCGGAGGCCGCACGATGCTTCCGCAGTGCTGCCGGTGCTGGCCACGCC
AAGTCCATGCTCAACCTGGGTGCGTGCTATGAAGCCGGCCGCGGTGTGGA
GAAGGACGAGTCAGAGGCTGCTCGATGGTACCGGCGCGCTGCCGGTGCTG
GCCACGCCACGTCCATGCTGCGCCTCTCAGAGTGTCTGCGCAGCGGCACA
GGCACTCCTGCCGATGCAGATGAGGCTGCGCTGTGGCTGGGGAGGGCTGC
CGATGCTGGGTGTGTACAAGCGATGGTCCCAGTTGCACTCCAGCTCCTGG
AGGCGGGGGATGTGCACAGCAGTGAGCGGGCGCGCGCGCTGCTGGAGAAG
GCGGCGGTGGCGGCCGATGTGGAGGGCATGTTCGAGCTGGGGCGGCTGTT
GTTGGGGGGCAGGCGCATCCCGTCGGATGAGCGGAGGGCTGTGTTCTGGC
TGCGGAAGGCGGCGGAGGGCGGGCGTGAGGGCGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93228:22..756-

>mRNA_M-pyrifera_M_contig93228.21530.1 ID=mRNA_M-pyrifera_M_contig93228.21530.1|Name=mRNA_M-pyrifera_M_contig93228.21530.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1206bp|location=Sequence derived from alignment at M-pyrifera_M_contig93228:22..756- (Macrocystis pyrifera P11B4 male)
ATGGACGAGGCAGAGGCTGCTCGATGGTACCGGCGCGCTGCTGAAGCTGG
AAACAGCGGCGCCATGCTCAGCCTGGGGTTTCGCTATGAGGAAGGCCGCG
GAGTGGAGAAGGACGAGTCAGAGGCTGTTCGATGGTACCGGCGCGCTGCT
GAAGCTGGAAACTGCAGGGGCATGACATACCTACGTGCATGCATTGATCG
CGGCTGTGCAGCAGAGCTTGACTCCGCGGAGGCCGCACGATGCTTCCGCA
GTGCTGCCGGTGCTGGCCACGCCAAGTCCATGCTCAACCTGGGTGCGTGC
TATGAAGCCGGCCGCGGTGTGGAGAAGGACGAGTCAGAGGCTGCTCGATG
GTACCGGCGCGCTGCCGGTGCTGGCCACGCCACGTCCATGCTGCGCCTCT
CAGAGTGTCTGCGCAGCGGCACAGGCACTCCTGCCGATGCAGATGAGGCT
GCGCTGTGGCTGGGGAGGGCTGCCGATGCTGGGTGTGTACAAGCGATGGT
CCCAATGGACGAGGCAGAGGCTGCTCGATGGTACCGGCGCGCTGCTGAAG
CTGGAAACAGCGGCGCCATGCTCAGCCTGGGGTTTCGCTATGAGGAAGGC
CGCGGAGTGGAGAAGGACGAGTCAGAGGCTGTTCGATGGTACCGGCGCGC
TGCTGAAGCTGGAAACTGCAGGGGCATGACATACCTACGTGCATGCATTG
ATCGCGGCTGTGCAGCAGAGCTTGACTCCGCGGAGGCCGCACGATGCTTC
CGCAGTGCTGCCGGTGCTGGCCACGCCAAGTCCATGCTCAACCTGGGTGC
GTGCTATGAAGCCGGCCGCGGTGTGGAGAAGGACGAGTCAGAGGCTGCTC
GATGGTACCGGCGCGCTGCCGGTGCTGGCCACGCCACGTCCATGCTGCGC
CTCTCAGAGTGTCTGCGCAGCGGCACAGGCACTCCTGCCGATGCAGATGA
GGCTGCGCTGTGGCTGGGGAGGGCTGCCGATGCTGGGTGTGTACAAGCGA
TGGTCCCACTGGGGCGGCTGTTGTTGGGGGGCAGGCGCATCCCGTCGGAT
GAGCGGAGGGCTGTGTTCTGGCTGCGGAAGGCGGCGGAGGGCGGGCGTGA
GGGCGCACTGGGGCGGCTGTTGTTGGGGGGCAGGCGCATCCCGTCGGATG
AGCGGAGGGCTGTGTTCTGGCTGCGGAAGGCGGCGGAGGGCGGGCGTGAG
GGCGCA
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