mRNA_M-pyrifera_M_contig93169.21526.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93169.21526.1
Unique NamemRNA_M-pyrifera_M_contig93169.21526.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93169.21526.1 vs. uniprot
Match: A0A5A8EBP6_CAFRO (Ubiquitin-like domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EBP6_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 1.810e-14
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:    4 EFWSTRTSGARERWDALKLACESLLQEPPDVGLAGEVLSAADLRCP-TGNLAEVYDARGRLYAVPRYCYQTPANVMSTE 237
            +FWSTRT    + W+AL L  ++LLQ   D GLA  +L  + LR      L+EV+D RG+LY VPRYC+QTP NV S +
Sbjct:   76 QFWSTRTENQPQAWEALHLCADTLLQG--DAGLAHTILVESGLRVGGRAGLSEVWDPRGQLYRVPRYCWQTPGNVASDD 152
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BLAST of mRNA_M-pyrifera_M_contig93169.21526.1 vs. uniprot
Match: A0A8H4W4U4_9HELO (Ubiquitin-like domain-containing protein n=1 Tax=Cudoniella acicularis TaxID=354080 RepID=A0A8H4W4U4_9HELO)

HSP 1 Score: 52.4 bits (124), Expect = 5.170e-6
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:    7 FWSTRTSGARERWDALKLACESLLQ--EPPD----VGLAGEVLSAADLRCPTGNLAE--VYDARGRLYAVPRYCYQTPANVMSTED 240
            F+ TRT+G  E W  L+ A E L    EP D    VG A ++L AAD+  PTG+LA    +DA G  Y +P      P N++++ +
Sbjct:  143 FFDTRTAGRTEIWQTLRAALEILWAGGEPEDHDGGVGTAQQILDAADITIPTGDLAVGGAFDAFGVHYKMPPEIVSDPENIVASPE 228
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BLAST of mRNA_M-pyrifera_M_contig93169.21526.1 vs. uniprot
Match: A0A2J6SD51_9HELO (Ubiquitin-like domain-containing protein n=2 Tax=Hyaloscypha hepaticicola/Rhizoscyphus ericae species complex TaxID=186449 RepID=A0A2J6SD51_9HELO)

HSP 1 Score: 51.6 bits (122), Expect = 8.880e-6
Identity = 29/82 (35.37%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:    4 EFWSTRTSGARERWDALKLACESLLQEPPD------VGLAGEVLSAADLRCPTGNLAE--VYDARGRLYAVPRYCYQTPANV 225
            EF+ TR +G  E W  ++   E L     +      +G A ++L AAD+  PTG+LA   VYD+ G  Y++P Y    P N+
Sbjct:   89 EFFDTRVTGRSEVWQTVQQVLELLWSGGDEGDTDGGLGTAQQILDAADITIPTGDLATGGVYDSLGAHYSLPEYIVSDPQNI 170
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93169.21526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8EBP6_CAFRO1.810e-1449.37Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
A0A8H4W4U4_9HELO5.170e-638.37Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
A0A2J6SD51_9HELO8.880e-635.37Ubiquitin-like domain-containing protein n=2 Tax=H... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93169contigM-pyrifera_M_contig93169:314..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog69293.ENSGACP00000006485
Preferred nameUBTD1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ubiquitin domain containing
EggNOG OGs38EE6@33154,3BBAY@33208,3CSP6@33213,485JW@7711,48VSE@7742,49RQQ@7898,KOG0013@1,KOG0013@2759
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816844.175159-CDS-M-pyrifera_M_contig93169:313..5531622816844.175159-CDS-M-pyrifera_M_contig93169:313..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93169 314..553 +
1692278211.688507-CDS-M-pyrifera_M_contig93169:313..5531692278211.688507-CDS-M-pyrifera_M_contig93169:313..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93169 314..553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93169.21526.1prot_M-pyrifera_M_contig93169.21526.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93169 314..553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93169.21526.1

>prot_M-pyrifera_M_contig93169.21526.1 ID=prot_M-pyrifera_M_contig93169.21526.1|Name=mRNA_M-pyrifera_M_contig93169.21526.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
QEFWSTRTSGARERWDALKLACESLLQEPPDVGLAGEVLSAADLRCPTGN
LAEVYDARGRLYAVPRYCYQTPANVMSTED
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mRNA from alignment at M-pyrifera_M_contig93169:314..553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93169.21526.1 ID=mRNA_M-pyrifera_M_contig93169.21526.1|Name=mRNA_M-pyrifera_M_contig93169.21526.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig93169:314..553+ (Macrocystis pyrifera P11B4 male)
CAGGAATTCTGGAGTACTCGGACTTCTGGTGCTCGCGAGCGTTGGGATGC
GTTGAAACTCGCATGTGAGAGTCTGCTGCAGGAGCCTCCGGACGTTGGTT
TGGCCGGTGAGGTGCTGAGTGCCGCAGATTTGCGTTGTCCTACCGGCAAT
TTGGCGGAAGTGTACGATGCGCGAGGCAGACTGTACGCGGTGCCTCGGTA
CTGCTACCAAACGCCGGCCAACGTGATGTCGACGGAAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93169:314..553+

>mRNA_M-pyrifera_M_contig93169.21526.1 ID=mRNA_M-pyrifera_M_contig93169.21526.1|Name=mRNA_M-pyrifera_M_contig93169.21526.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig93169:314..553+ (Macrocystis pyrifera P11B4 male)
CAGGAATTCTGGAGTACTCGGACTTCTGGTGCTCGCGAGCGTTGGGATGC
GTTGAAACTCGCATGTGAGAGTCTGCTGCAGGAGCCTCCGGACGTTGGTT
TGGCCGGTGAGGTGCTGAGTGCCGCAGATTTGCGTTGTCCTACCGGCAAT
TTGGCGGAAGTGTACGATGCGCGAGGCAGACTGTACGCGGTGCCTCGGTA
CTGCTACCAAACGCCGGCCAACGTGATGTCGACGGAAGATCAGGAATTCT
GGAGTACTCGGACTTCTGGTGCTCGCGAGCGTTGGGATGCGTTGAAACTC
GCATGTGAGAGTCTGCTGCAGGAGCCTCCGGACGTTGGTTTGGCCGGTGA
GGTGCTGAGTGCCGCAGATTTGCGTTGTCCTACCGGCAATTTGGCGGAAG
TGTACGATGCGCGAGGCAGACTGTACGCGGTGCCTCGGTACTGCTACCAA
ACGCCGGCCAACGTGATGTCGACGGAAGAT
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