mRNA_M-pyrifera_M_contig93096.21516.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93096.21516.1
Unique NamemRNA_M-pyrifera_M_contig93096.21516.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93096.21516.1 vs. uniprot
Match: A0A556QVH6_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Cardinium endosymbiont of Dermatophagoides farinae TaxID=2597823 RepID=A0A556QVH6_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 9.990e-6
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:  103 TLLHVAAEGGFWKLTQLLVRDFKAPLHARNAFGNTPLHLAEANGHKRVARLL 258
            TLLHVAA  G W+  QLL++D K  ++ARN + +TP+H A A  H  V ++L
Sbjct:   19 TLLHVAAFEGDWQKAQLLLKDKKIDVNARNNYYDTPMHYAVAQEHVEVLKVL 70
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BLAST of mRNA_M-pyrifera_M_contig93096.21516.1 vs. uniprot
Match: A0A2S8FZA3_9BACT (Uncharacterized protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2S8FZA3_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 4.090e-5
Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:   67 VRVDARIGDQAQTLLHVAAEGGFWKLTQLLVRDFKAPLHARNAFGNTPLHLAEANGHKRVARLL 258
            +R D R G+   T LH AA  G  +L Q+L+ D + PL ARNA G TPLHLA      RV + L
Sbjct:  135 LRQDPRSGEVGDTFLHTAARRGNDELCQILI-DEQLPLDARNAAGQTPLHLAAQWAPPRVVQTL 197
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93096.21516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A556QVH6_9BACT9.990e-648.08Ankyrin repeat domain-containing protein n=1 Tax=C... [more]
A0A2S8FZA3_9BACT4.090e-546.88Uncharacterized protein n=2 Tax=Pirellulaceae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93096contigM-pyrifera_M_contig93096:323..652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.7243335-CDS-M-pyrifera_M_contig93096:322..6521622816843.7243335-CDS-M-pyrifera_M_contig93096:322..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93096 323..652 -
1692278211.4789937-CDS-M-pyrifera_M_contig93096:322..6521692278211.4789937-CDS-M-pyrifera_M_contig93096:322..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93096 323..652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93096.21516.1prot_M-pyrifera_M_contig93096.21516.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93096 323..652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93096.21516.1

>prot_M-pyrifera_M_contig93096.21516.1 ID=prot_M-pyrifera_M_contig93096.21516.1|Name=mRNA_M-pyrifera_M_contig93096.21516.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
EAFGAAADNDIQAVGRLLLCGDVRVDARIGDQAQTLLHVAAEGGFWKLTQ
LLVRDFKAPLHARNAFGNTPLHLAEANGHKRVARLLRAFGASDRVKNATG
KTPIDLRTI*
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mRNA from alignment at M-pyrifera_M_contig93096:323..652-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93096.21516.1 ID=mRNA_M-pyrifera_M_contig93096.21516.1|Name=mRNA_M-pyrifera_M_contig93096.21516.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig93096:323..652- (Macrocystis pyrifera P11B4 male)
GAAGCGTTTGGAGCTGCAGCTGACAATGATATTCAAGCGGTGGGGAGGTT
GCTCTTGTGTGGAGATGTGAGGGTGGATGCAAGAATCGGAGATCAAGCCC
AAACTTTACTGCATGTAGCAGCAGAAGGTGGGTTTTGGAAACTCACGCAG
CTGCTGGTACGAGACTTCAAGGCCCCCCTCCACGCCAGAAACGCTTTTGG
AAACACCCCTCTCCACCTCGCAGAAGCCAACGGACACAAGAGGGTCGCAA
GACTCCTCAGAGCCTTTGGAGCATCAGACAGAGTCAAAAACGCAACCGGA
AAAACACCAATCGACCTCAGAACCATCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93096:323..652-

>mRNA_M-pyrifera_M_contig93096.21516.1 ID=mRNA_M-pyrifera_M_contig93096.21516.1|Name=mRNA_M-pyrifera_M_contig93096.21516.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig93096:323..652- (Macrocystis pyrifera P11B4 male)
GAAGCGTTTGGAGCTGCAGCTGACAATGATATTCAAGCGGTGGGGAGGTT
GCTCTTGTGTGGAGATGTGAGGGTGGATGCAAGAATCGGAGATCAAGCCC
AAACTTTACTGCATGTAGCAGCAGAAGGTGGGTTTTGGAAACTCACGCAG
CTGCTGGTACGAGACTTCAAGGCCCCCCTCCACGCCAGAAACGCTTTTGG
AAACACCCCTCTCCACCTCGCAGAAGCCAACGGACACAAGAGGGTCGCAA
GACTCCTCAGAGCCTTTGGAGCATCAGACAGAGTCAAAAACGCAACCGGA
AAAACACCAATCGACCTCAGAACCATCTAGGAAGCGTTTGGAGCTGCAGC
TGACAATGATATTCAAGCGGTGGGGAGGTTGCTCTTGTGTGGAGATGTGA
GGGTGGATGCAAGAATCGGAGATCAAGCCCAAACTTTACTGCATGTAGCA
GCAGAAGGTGGGTTTTGGAAACTCACGCAGCTGCTGGTACGAGACTTCAA
GGCCCCCCTCCACGCCAGAAACGCTTTTGGAAACACCCCTCTCCACCTCG
CAGAAGCCAACGGACACAAGAGGGTCGCAAGACTCCTCAGAGCCTTTGGA
GCATCAGACAGAGTCAAAAACGCAACCGGAAAAACACCAATCGACCTCAG
AACCATCTAG
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