mRNA_M-pyrifera_M_contig93084.21512.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93084.21512.1
Unique NamemRNA_M-pyrifera_M_contig93084.21512.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93084.21512.1 vs. uniprot
Match: A0A7S2WD98_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WD98_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.140e-6
Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:  442 KKRAFLEFLARQERTLRAKKEFAEEERKRSASAHRPRLCRKSLDMVKPETHGAFLERMQRDAVRKEQSALRERARASQDKDCTFAPEI 705
            +++ F  F+ARQ +    K++  E+  K+ A  H+P+LC+ S+ +VK    G+FL+R+ +DA+RKE   +R + R + D +CTF P+I
Sbjct:  527 RRKNFDAFIARQNQREIRKQQKIEQVSKQIARTHKPKLCKNSVKIVKNNIQGSFLQRVAKDALRKEHETVRLKTR-NHDPECTFQPKI 613
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93084.21512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2WD98_9STRA2.140e-637.50Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93084contigM-pyrifera_M_contig93084:13..735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size723
Cds size723
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.5702693-CDS-M-pyrifera_M_contig93084:12..7351622816843.5702693-CDS-M-pyrifera_M_contig93084:12..735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93084 13..735 -
1692278211.405347-CDS-M-pyrifera_M_contig93084:12..7351692278211.405347-CDS-M-pyrifera_M_contig93084:12..735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93084 13..735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93084.21512.1prot_M-pyrifera_M_contig93084.21512.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93084 13..735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93084.21512.1

>prot_M-pyrifera_M_contig93084.21512.1 ID=prot_M-pyrifera_M_contig93084.21512.1|Name=mRNA_M-pyrifera_M_contig93084.21512.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=241bp
SKGSGRARRDAGYEECTFQPKINKVPHSMGAVQAYLSKPAHERLSSHAVS
AARRSHRSAAATEADILRAQQPSSSSSSSSSAHAPASSTPASSPGDGSRA
VFSMGEFLTAASGGGAGTRGGGEGGEAEDEVERGGGEQSMHERGKGRKKR
AFLEFLARQERTLRAKKEFAEEERKRSASAHRPRLCRKSLDMVKPETHGA
FLERMQRDAVRKEQSALRERARASQDKDCTFAPEINPVRRS
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mRNA from alignment at M-pyrifera_M_contig93084:13..735-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93084.21512.1 ID=mRNA_M-pyrifera_M_contig93084.21512.1|Name=mRNA_M-pyrifera_M_contig93084.21512.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=723bp|location=Sequence derived from alignment at M-pyrifera_M_contig93084:13..735- (Macrocystis pyrifera P11B4 male)
TCCAAGGGTTCTGGAAGGGCGAGGAGAGATGCGGGGTACGAAGAGTGCAC
GTTCCAGCCCAAGATCAACAAGGTGCCACACTCCATGGGCGCAGTGCAAG
CATACTTGTCCAAACCCGCACATGAAAGACTTTCCAGCCACGCAGTGTCT
GCAGCTAGACGTTCTCACCGATCAGCTGCTGCCACGGAAGCTGATATCCT
CAGGGCCCAACAGCCTTCTTCCTCCTCCTCTTCCTCCTCCTCTGCACACG
CTCCTGCTTCCTCCACCCCTGCCTCCTCCCCTGGAGATGGTTCCAGAGCA
GTCTTCTCCATGGGAGAGTTCCTCACAGCAGCTTCTGGCGGAGGCGCAGG
AACGAGGGGAGGTGGGGAAGGCGGAGAAGCGGAGGATGAGGTGGAAAGGG
GTGGAGGAGAGCAAAGCATGCACGAGCGAGGCAAAGGCCGCAAGAAGCGG
GCGTTCCTAGAGTTCCTCGCCAGGCAAGAACGCACTCTGCGAGCCAAGAA
GGAGTTTGCGGAAGAAGAAAGGAAGCGATCGGCATCGGCACACCGACCTC
GACTCTGCAGAAAATCCCTCGACATGGTCAAGCCAGAAACGCACGGCGCT
TTCCTCGAACGCATGCAGAGAGACGCTGTCCGCAAAGAACAGTCCGCGCT
GCGGGAACGAGCGAGGGCGTCCCAAGACAAAGACTGCACCTTTGCACCAG
AAATCAACCCCGTAAGGAGAAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93084:13..735-

>mRNA_M-pyrifera_M_contig93084.21512.1 ID=mRNA_M-pyrifera_M_contig93084.21512.1|Name=mRNA_M-pyrifera_M_contig93084.21512.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1446bp|location=Sequence derived from alignment at M-pyrifera_M_contig93084:13..735- (Macrocystis pyrifera P11B4 male)
TCCAAGGGTTCTGGAAGGGCGAGGAGAGATGCGGGGTACGAAGAGTGCAC
GTTCCAGCCCAAGATCAACAAGGTGCCACACTCCATGGGCGCAGTGCAAG
CATACTTGTCCAAACCCGCACATGAAAGACTTTCCAGCCACGCAGTGTCT
GCAGCTAGACGTTCTCACCGATCAGCTGCTGCCACGGAAGCTGATATCCT
CAGGGCCCAACAGCCTTCTTCCTCCTCCTCTTCCTCCTCCTCTGCACACG
CTCCTGCTTCCTCCACCCCTGCCTCCTCCCCTGGAGATGGTTCCAGAGCA
GTCTTCTCCATGGGAGAGTTCCTCACAGCAGCTTCTGGCGGAGGCGCAGG
AACGAGGGGAGGTGGGGAAGGCGGAGAAGCGGAGGATGAGGTGGAAAGGG
GTGGAGGAGAGCAAAGCATGCACGAGCGAGGCAAAGGCCGCAAGAAGCGG
GCGTTCCTAGAGTTCCTCGCCAGGCAAGAACGCACTCTGCGAGCCAAGAA
GGAGTTTGCGGAAGAAGAAAGGAAGCGATCGGCATCGGCACACCGACCTC
GACTCTGCAGAAAATCCCTCGACATGGTCAAGCCAGAAACGCACGGCGCT
TTCCTCGAACGCATGCAGAGAGACGCTGTCCGCAAAGAACAGTCCGCGCT
GCGGGAACGAGCGAGGGCGTCCCAAGACAAAGACTGCACCTTTGCACCAG
AAATCAACCCCGTAAGGAGAAGTTCCAAGGGTTCTGGAAGGGCGAGGAGA
GATGCGGGGTACGAAGAGTGCACGTTCCAGCCCAAGATCAACAAGGTGCC
ACACTCCATGGGCGCAGTGCAAGCATACTTGTCCAAACCCGCACATGAAA
GACTTTCCAGCCACGCAGTGTCTGCAGCTAGACGTTCTCACCGATCAGCT
GCTGCCACGGAAGCTGATATCCTCAGGGCCCAACAGCCTTCTTCCTCCTC
CTCTTCCTCCTCCTCTGCACACGCTCCTGCTTCCTCCACCCCTGCCTCCT
CCCCTGGAGATGGTTCCAGAGCAGTCTTCTCCATGGGAGAGTTCCTCACA
GCAGCTTCTGGCGGAGGCGCAGGAACGAGGGGAGGTGGGGAAGGCGGAGA
AGCGGAGGATGAGGTGGAAAGGGGTGGAGGAGAGCAAAGCATGCACGAGC
GAGGCAAAGGCCGCAAGAAGCGGGCGTTCCTAGAGTTCCTCGCCAGGCAA
GAACGCACTCTGCGAGCCAAGAAGGAGTTTGCGGAAGAAGAAAGGAAGCG
ATCGGCATCGGCACACCGACCTCGACTCTGCAGAAAATCCCTCGACATGG
TCAAGCCAGAAACGCACGGCGCTTTCCTCGAACGCATGCAGAGAGACGCT
GTCCGCAAAGAACAGTCCGCGCTGCGGGAACGAGCGAGGGCGTCCCAAGA
CAAAGACTGCACCTTTGCACCAGAAATCAACCCCGTAAGGAGAAGT
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