mRNA_M-pyrifera_M_contig93063.21507.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93063.21507.1
Unique NamemRNA_M-pyrifera_M_contig93063.21507.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig93063.21507.1 vs. uniprot
Match: UPI0015D0CC2D (E3 ubiquitin-protein ligase TRIM47-like n=1 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015D0CC2D)

HSP 1 Score: 52.0 bits (123), Expect = 1.240e-5
Identity = 25/63 (39.68%), Postives = 34/63 (53.97%), Query Frame = 1 
Query:  127 NRLHSHSTDS-------HFTQ---RPPTVVHVDAICDGCGMFPLVGPRFQCRERPDVVLCVAC 285
            N++ +H  +S       H TQ   +P   VH   ICDGC MFP++GPRF+C +  D   C  C
Sbjct:  350 NKIITHGDESVELQDPGHQTQAMPQPHPNVHPTIICDGCNMFPMIGPRFKCLDCNDFDFCEIC 412
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BLAST of mRNA_M-pyrifera_M_contig93063.21507.1 vs. uniprot
Match: A0A835PND7_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PND7_VANPL)

HSP 1 Score: 49.7 bits (117), Expect = 8.430e-5
Identity = 22/60 (36.67%), Postives = 33/60 (55.00%), Query Frame = 1 
Query:  109 AGAWGDNRL-HSHSTDSHFTQRPPTVVHVDAICDGCGMFPLVGPRFQCRERPDVVLCVAC 285
            A A+  +RL H +     +  R     H   ICDGCGM P++GPR++   + +  LC+AC
Sbjct:  289 ANAFRGHRLQHPYGRFCSYDGRTSRAFHRGVICDGCGMHPIMGPRYKSTVKDNYDLCIAC 348
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BLAST of mRNA_M-pyrifera_M_contig93063.21507.1 vs. uniprot
Match: A0A7S3DZD4_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3DZD4_9CHLO)

HSP 1 Score: 48.9 bits (115), Expect = 9.020e-5
Identity = 22/44 (50.00%), Postives = 26/44 (59.09%), Query Frame = 1 
Query:  163 TQRPPTVVHVDAICDGCGMFPLVGPRFQC---RERPDVVLCVAC 285
            T RP   VH    CDGCG+ P+VGPR+QC   +ER    LC  C
Sbjct:   58 TIRPENFVHFGVGCDGCGVCPIVGPRWQCTECKERIGFDLCAEC 101
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93063.21507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI0015D0CC2D1.240e-539.68E3 ubiquitin-protein ligase TRIM47-like n=1 Tax=El... [more]
A0A835PND7_VANPL8.430e-536.67Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]
A0A7S3DZD4_9CHLO9.020e-550.00Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93063contigM-pyrifera_M_contig93063:394..678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2e-11
Seed eggNOG ortholog4792.ETI48142
KEGG koko:K05925,ko:K17987,ko:K21997
KEGG Pathwayko04137,map04137
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000328,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005775,GO:0005829,GO:0006914,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016043,GO:0016236,GO:0022607,GO:0031410,GO:0031974,GO:0031982,GO:0032182,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051258,GO:0051259,GO:0051641,GO:0061919,GO:0061957,GO:0065003,GO:0070013,GO:0070727,GO:0071840,GO:0072665,GO:0097708,GO:0120113
EggNOG free text desc.Ig-like domain from next to BRCA1 gene
EggNOG OGs3QBD5@4776,KOG4351@1,KOG4351@2759,KOG4582@1,KOG4582@2759
EC2.1.1.62
COG Functional cat.DZ
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko04131
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816843.403137-CDS-M-pyrifera_M_contig93063:393..6781622816843.403137-CDS-M-pyrifera_M_contig93063:393..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93063 394..678 +
1692278211.322131-CDS-M-pyrifera_M_contig93063:393..6781692278211.322131-CDS-M-pyrifera_M_contig93063:393..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93063 394..678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93063.21507.1prot_M-pyrifera_M_contig93063.21507.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93063 394..678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93063.21507.1

>prot_M-pyrifera_M_contig93063.21507.1 ID=prot_M-pyrifera_M_contig93063.21507.1|Name=mRNA_M-pyrifera_M_contig93063.21507.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
HYGVTCSACRSSPIVGVCHLCRAVDCDVRLCDTCFRAGAWGDNRLHSHST
DSHFTQRPPTVVHVDAICDGCGMFPLVGPRFQCRERPDVVLCVAC
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mRNA from alignment at M-pyrifera_M_contig93063:394..678+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93063.21507.1 ID=mRNA_M-pyrifera_M_contig93063.21507.1|Name=mRNA_M-pyrifera_M_contig93063.21507.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig93063:394..678+ (Macrocystis pyrifera P11B4 male)
CACTACGGCGTGACGTGCAGCGCCTGTCGCTCCTCGCCCATCGTCGGCGT
CTGCCACCTCTGCCGCGCGGTAGACTGTGACGTGCGCCTGTGCGACACGT
GCTTCCGCGCCGGCGCCTGGGGCGACAACCGGCTGCACAGCCATTCCACC
GACTCGCATTTCACGCAGCGCCCGCCCACCGTGGTGCATGTGGACGCCAT
CTGCGATGGCTGCGGCATGTTTCCCCTCGTCGGACCGCGGTTCCAGTGCC
GGGAGCGGCCGGACGTGGTGCTGTGCGTGGCCTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93063:394..678+

>mRNA_M-pyrifera_M_contig93063.21507.1 ID=mRNA_M-pyrifera_M_contig93063.21507.1|Name=mRNA_M-pyrifera_M_contig93063.21507.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig93063:394..678+ (Macrocystis pyrifera P11B4 male)
CACTACGGCGTGACGTGCAGCGCCTGTCGCTCCTCGCCCATCGTCGGCGT
CTGCCACCTCTGCCGCGCGGTAGACTGTGACGTGCGCCTGTGCGACACGT
GCTTCCGCGCCGGCGCCTGGGGCGACAACCGGCTGCACAGCCATTCCACC
GACTCGCATTTCACGCAGCGCCCGCCCACCGTGGTGCATGTGGACGCCAT
CTGCGATGGCTGCGGCATGTTTCCCCTCGTCGGACCGCGGTTCCAGTGCC
GGGAGCGGCCGGACGTGGTGCTGTGCGTGGCCTGCCACTACGGCGTGACG
TGCAGCGCCTGTCGCTCCTCGCCCATCGTCGGCGTCTGCCACCTCTGCCG
CGCGGTAGACTGTGACGTGCGCCTGTGCGACACGTGCTTCCGCGCCGGCG
CCTGGGGCGACAACCGGCTGCACAGCCATTCCACCGACTCGCATTTCACG
CAGCGCCCGCCCACCGTGGTGCATGTGGACGCCATCTGCGATGGCTGCGG
CATGTTTCCCCTCGTCGGACCGCGGTTCCAGTGCCGGGAGCGGCCGGACG
TGGTGCTGTGCGTGGCCTGC
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