mRNA_M-pyrifera_M_contig93008.21496.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig93008.21496.1
Unique NamemRNA_M-pyrifera_M_contig93008.21496.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Match: A0A0E9NJS6_SAICN (PRP1_N domain-containing protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NJS6_SAICN)

HSP 1 Score: 79.7 bits (195), Expect = 6.920e-15
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 RGVREVGSRGAEIGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAEDRVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAAAELEKEQGNGEAFEAVLKEG 336
            R + E+   GA + R +WL+ A + +     +TA+A+V +T   GL  EDR   W+ +A  L   G  A ARA++  ALRV P++ +LWR AAELEK  G  EA EA+L++G
Sbjct:  466 RAIMELQKEGAALEREQWLAEAEKCDSEGDVVTAQAIVNQTLGQGLEDEDREAQWMDDATALVSRGRFATARAVYAYALRVYPEEDSLWRKAAELEKNHGTREAMEAILEKG 577          
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Match: A0A8H3TN05_9TREE (PRP1_N domain-containing protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3TN05_9TREE)

HSP 1 Score: 69.7 bits (169), Expect = 2.210e-11
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   37 IGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAEDRVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAAAELEKEQGNGEAFEAVL 327
            + R +W+  A   E   SP+TA+A+++ T  L +  EDR+ TW+ +AE   +     CAR ++   ++V P    +WRAAA+ EK+ G  EA + +L
Sbjct:  479 MSREQWMKEAERCETEGSPITAQAILKATLHLDIEEEDRLDTWLDDAESAAKRNFIECARGIYAYVIKVFPTKKAVWRAAADFEKQHGTSEALQELL 575          
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Match: A0A1C7LXR5_GRIFR (Pre-mRNA-processing factor 6 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7LXR5_GRIFR)

HSP 1 Score: 66.2 bits (160), Expect = 3.620e-10
Identity = 41/105 (39.05%), Postives = 53/105 (50.48%), Query Frame = 1
Query:    4 GVREVGSRGAEIGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAEDRVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAAAELEKEQGNGEAFE 318
            GVRE+      + R +WL  A   E   SP T  A+V+ T  + +  EDR+ TWV +AE          ARA+   ALRV P    LWR AA LEK  G  E+ +
Sbjct:  473 GVRELRRHQVLLTREQWLKEAERCENEGSPRTCEAIVKATVAMDIEEEDRLDTWVGDAEAAEAKSNVGTARAILAYALRVFPDKKNLWRKAAALEKAHGTRESLD 577          
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Match: A0A316V8H1_9BASI (Putative pre-mRNA splicing factor prp1 n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316V8H1_9BASI)

HSP 1 Score: 66.2 bits (160), Expect = 3.620e-10
Identity = 36/122 (29.51%), Postives = 64/122 (52.46%), Query Frame = 1
Query:    7 VREVGSRGAEIGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAEDRVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAAAELEKEQGNGEAFEAVLKEGMRQSARSPVLWL 372
            ++ +   GA + R +WL  A + +   SP ++ ++V+ T  + +  EDR   WV +A+     G  A ARA+    LR      ++W+ AA+LEK+ GN    + +L++ +    +S  LWL
Sbjct:  475 IKRLTKNGAVLSREQWLKEAEQVDSEGSPRSSASIVKATIAMDIDEEDRQTVWVEDAQACIERGRIATARAILAYTLRHFTDQASIWKIAADLEKQHGNKATLQRLLEKAVSSCPKSEELWL 596          
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Match: G7E6K2_MIXOS (PRP1_N domain-containing protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E6K2_MIXOS)

HSP 1 Score: 65.9 bits (159), Expect = 4.920e-10
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 1
Query:    4 GVREVGSRGAEIGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAEDRVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAAAELEKEQGNGEAFEA 321
            G + +   G E+ R EW+  A   E   S LTARA+V  T    +  + R+ TWV +A+        A ARA+   ALRV P+   LWR AA+LEK+ G+ E   A
Sbjct:  458 GCQRLRQAGVELSREEWIKEALRCEEDGSLLTARAIVNATIHQDIDEDQRLETWVEDAQSALATSHIATARAMLAYALRVFPQKQALWRRAADLEKKHGSRETLLA 563          
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Match: A0A0C3DZ29_9AGAM (PRP1_N domain-containing protein n=2 Tax=Sclerodermatineae TaxID=227327 RepID=A0A0C3DZ29_9AGAM)

HSP 1 Score: 65.5 bits (158), Expect = 6.730e-10
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 1
Query:    4 GVREVGSRGAEIGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAEDRVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAAAELEKEQGNGEAFE 318
            GVRE+      + R +WL  A   E   SP T  A+++ T  + +  EDR+ TWV +AE          ARA+   AL+V P    LWR AA+LEK  G+ E+ +
Sbjct:  475 GVRELRRHQVLLTREQWLKEAERCESESSPRTCEAIIKATVGMEIEEEDRLDTWVTDAESAESRDKVGTARAILAYALKVFPDKRHLWRKAADLEKAHGSRESLD 579          
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Match: A0A4S4LAC1_9AGAM (PRP1_N domain-containing protein n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LAC1_9AGAM)

HSP 1 Score: 64.3 bits (155), Expect = 1.710e-9
Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    4 GVREVGSRGAEIGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAEDRVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAAAELEKEQGNGE 309
            GVRE+      + R +WL  A   E   SP T+ A+++ T  + +  EDR+ TWV +AE     G+   ARA+   AL+V P    LW  AA LEK  G  E
Sbjct:  470 GVRELRRHQVLLTREQWLKEAERCESDGSPRTSEAIIKATVGMEIEEEDRLDTWVGDAESAEERGMIGSARAILAYALKVFPDRRMLWEKAAGLEKAHGTRE 571          
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Match: A0A4R0RB93_9APHY (PRP1_N domain-containing protein n=2 Tax=Agaricomycetes TaxID=155619 RepID=A0A4R0RB93_9APHY)

HSP 1 Score: 63.9 bits (154), Expect = 2.330e-9
Identity = 39/106 (36.79%), Postives = 54/106 (50.94%), Query Frame = 1
Query:    4 GVREVGSRGAEIGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAEDRVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAAAELEKEQGNGEAFEA 321
            GV ++      + R +WL  A + E   SP T  A+V+ T  + +  EDR+ TWV +AE          ARA+   ALRV P    LWR AA+LE+  G  E+  A
Sbjct:  478 GVGQLRKHQVLLTREQWLKEAEKCEAEGSPRTCEAIVKATVAMEVEEEDRLDTWVGDAESAEARERVGTARAILAYALRVFPDKKMLWRKAADLERTHGTRESLNA 583          
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Match: A0A0D0BDB0_9AGAR (PRP1_N domain-containing protein n=4 Tax=Omphalotaceae TaxID=72117 RepID=A0A0D0BDB0_9AGAR)

HSP 1 Score: 63.9 bits (154), Expect = 2.330e-9
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    4 GVREVGSRGAEIGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAEDRVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAAAELEKEQGNGEAFEA 321
            GVRE+   G  + R +WL  A + E   S LT+ A+V+ T  + +  EDR+ TW+ +AE      +   AR++   AL+V P    LW  AA LEK  G  ++ +A
Sbjct:  476 GVRELRRHGVLLTREQWLKEAEKCETQGSVLTSEAIVKATIAMDVEEEDRLDTWIDDAEGALSRNMVGTARSVLAYALKVFPDKKNLWIRAAGLEKAHGTSQSLDA 581          
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Match: A0A4S4N0N6_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4N0N6_9APHY)

HSP 1 Score: 63.2 bits (152), Expect = 4.310e-9
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    4 GVREVGSRGAEIGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAEDRVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAA 276
            GV+E+      + R +WL  A   E  +SP T  A+V+ T  + +  EDR+ TWV +AE     G+   ARA+   ALRV P   TLWR A
Sbjct:  526 GVKELRRHQVLLTREQWLKEAERCEAEESPRTCEAIVKATVAMEVEEEDRLDTWVGDAESAEARGMVGTARAILAYALRVFPDRKTLWRKA 616          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig93008.21496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0E9NJS6_SAICN6.920e-1541.96PRP1_N domain-containing protein n=1 Tax=Saitoella... [more]
A0A8H3TN05_9TREE2.210e-1135.05PRP1_N domain-containing protein n=1 Tax=Naganishi... [more]
A0A1C7LXR5_GRIFR3.620e-1039.05Pre-mRNA-processing factor 6 n=1 Tax=Grifola frond... [more]
A0A316V8H1_9BASI3.620e-1029.51Putative pre-mRNA splicing factor prp1 n=1 Tax=Mei... [more]
G7E6K2_MIXOS4.920e-1038.68PRP1_N domain-containing protein n=1 Tax=Mixia osm... [more]
A0A0C3DZ29_9AGAM6.730e-1037.14PRP1_N domain-containing protein n=2 Tax=Scleroder... [more]
A0A4S4LAC1_9AGAM1.710e-938.24PRP1_N domain-containing protein n=1 Tax=Phellinid... [more]
A0A4R0RB93_9APHY2.330e-936.79PRP1_N domain-containing protein n=2 Tax=Agaricomy... [more]
A0A0D0BDB0_9AGAR2.330e-935.85PRP1_N domain-containing protein n=4 Tax=Omphalota... [more]
A0A4S4N0N6_9APHY4.310e-939.56Uncharacterized protein (Fragment) n=1 Tax=Antrodi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig93008contigM-pyrifera_M_contig93008:3..374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score78.6
Seed ortholog evalue2.3e-12
Seed eggNOG ortholog10160.XP_004644241.1
Preferred namePRPF6
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048522,GO:0050681,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGs35IDZ@314146,38EYN@33154,3B9NH@33208,3CZ2Z@33213,3J7VY@40674,47ZA1@7711,48WDC@7742,4PZ00@9989,KOG0495@1,KOG0495@2759
COG Functional cat.A
Best tax levelRodentia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.8404317-CDS-M-pyrifera_M_contig93008:2..3741622816842.8404317-CDS-M-pyrifera_M_contig93008:2..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93008 3..374 -
1692278210.9843524-CDS-M-pyrifera_M_contig93008:2..3741692278210.9843524-CDS-M-pyrifera_M_contig93008:2..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig93008 3..374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig93008.21496.1prot_M-pyrifera_M_contig93008.21496.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig93008 3..374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig93008.21496.1

>prot_M-pyrifera_M_contig93008.21496.1 ID=prot_M-pyrifera_M_contig93008.21496.1|Name=mRNA_M-pyrifera_M_contig93008.21496.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
RGVREVGSRGAEIGRGEWLSLAREAEVGQSPLTARAVVEETATLGLAAED
RVRTWVAEAEELRRAGLPACARALFRLALRVTPKDVTLWRAAAELEKEQG
NGEAFEAVLKEGMRQSARSPVLWL
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mRNA from alignment at M-pyrifera_M_contig93008:3..374-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig93008.21496.1 ID=mRNA_M-pyrifera_M_contig93008.21496.1|Name=mRNA_M-pyrifera_M_contig93008.21496.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig93008:3..374- (Macrocystis pyrifera P11B4 male)
CGCGGGGTGCGAGAGGTTGGGTCTCGTGGTGCGGAGATCGGGCGTGGGGA GTGGTTGTCGTTGGCTCGGGAAGCGGAGGTTGGCCAGAGTCCGTTGACTG CGCGAGCGGTGGTGGAGGAGACGGCGACGCTTGGTCTCGCGGCGGAAGAC CGCGTGCGCACATGGGTCGCAGAGGCGGAGGAGCTGCGTCGCGCTGGCTT GCCTGCGTGCGCACGTGCGTTGTTTCGCCTGGCGCTGCGGGTGACTCCCA AGGACGTGACGCTGTGGCGGGCTGCTGCGGAGCTGGAGAAGGAGCAGGGC AATGGGGAGGCCTTCGAGGCTGTGCTGAAGGAAGGCATGCGGCAGAGCGC AAGGTCGCCAGTGCTGTGGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig93008:3..374-

>mRNA_M-pyrifera_M_contig93008.21496.1 ID=mRNA_M-pyrifera_M_contig93008.21496.1|Name=mRNA_M-pyrifera_M_contig93008.21496.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig93008:3..374- (Macrocystis pyrifera P11B4 male)
CGCGGGGTGCGAGAGGTTGGGTCTCGTGGTGCGGAGATCGGGCGTGGGGA
GTGGTTGTCGTTGGCTCGGGAAGCGGAGGTTGGCCAGAGTCCGTTGACTG
CGCGAGCGGTGGTGGAGGAGACGGCGACGCTTGGTCTCGCGGCGGAAGAC
CGCGTGCGCACATGGGTCGCAGAGGCGGAGGAGCTGCGTCGCGCTGGCTT
GCCTGCGTGCGCACGTGCGTTGTTTCGCCTGGCGCTGCGGGTGACTCCCA
AGGACGTGACGCTGTGGCGGGCTGCTGCGGAGCTGGAGAAGGAGCAGGGC
AATGGGGAGGCCTTCGAGGCTGTGCTGAAGGAAGGCATGCGGCAGAGCGC
AAGGTCGCCAGTGCTGTGGCTCCGCGGGGTGCGAGAGGTTGGGTCTCGTG
GTGCGGAGATCGGGCGTGGGGAGTGGTTGTCGTTGGCTCGGGAAGCGGAG
GTTGGCCAGAGTCCGTTGACTGCGCGAGCGGTGGTGGAGGAGACGGCGAC
GCTTGGTCTCGCGGCGGAAGACCGCGTGCGCACATGGGTCGCAGAGGCGG
AGGAGCTGCGTCGCGCTGGCTTGCCTGCGTGCGCACGTGCGTTGTTTCGC
CTGGCGCTGCGGGTGACTCCCAAGGACGTGACGCTGTGGCGGGCTGCTGC
GGAGCTGGAGAAGGAGCAGGGCAATGGGGAGGCCTTCGAGGCTGTGCTGA
AGGAAGGCATGCGGCAGAGCGCAAGGTCGCCAGTGCTGTGGCTC
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