mRNA_M-pyrifera_M_contig92933.21490.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92933.21490.1
Unique NamemRNA_M-pyrifera_M_contig92933.21490.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92933.21490.1 vs. uniprot
Match: UPI001EE79793 (SMI1/KNR4 family protein n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE79793)

HSP 1 Score: 151 bits (381), Expect = 1.270e-41
Identity = 94/239 (39.33%), Postives = 128/239 (53.56%), Query Frame = 1 
Query:    1 EQRLSLSLPEPYREALLDGVTIDGSDPAPYILQDVKELLIMNLEVRMALRDDAFCGAPWPTHFLGIGEDGCGNIYCIAANDSACAVQMFDHESNVFEDVTDSLPAYFEYISSIISLLKSTSEDCTGSSVRPEIESTLSPDVVFVARTDVPRESVLDPISMSEWLSLVESDPELELREFRAIVNPFRQEEIRSECPGLAVLESGTSGQEFQFSCGRVMVRCPDPAALQKLKQIAEALDAK 717
            E+RL   LPE Y E +      +     PY+  D+K +LI NL++RM  R  AF G PWP  FL IG DGCGN Y I  +     V  FDHE++ FE V   L  + + ++ + S+      D   +  +P     L  D   +ARTD P ESVL PI++ EW SLVE D +LE  EF    +PF+ EEIR    GLA  +SGT     Q++ GR+  R      ++K+K IA  L+A+
Sbjct:    9 EKRLGFELPEAYCEIVARSERCE-----PYLESDLKRMLIENLQLRMTPRPAAFAGKPWPPSFLCIGNDGCGNNYAIDVDAPQAGVWFFDHEADEFEIVAADLAEFVQQMAPLASI------DYRANGSQP-----LQSDNHVIARTDRPEESVLVPITLEEWKSLVERDDQLEWIEFEERKHPFKAEEIRIPVYGLARFQSGTESANLQWAFGRLWNRRGGLETVEKMKAIASNLEAR 231
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BLAST of mRNA_M-pyrifera_M_contig92933.21490.1 vs. uniprot
Match: A0A853I4Z7_9GAMM (Uncharacterized protein n=1 Tax=Endozoicomonas sp. SM1973 TaxID=2751884 RepID=A0A853I4Z7_9GAMM)

HSP 1 Score: 71.6 bits (174), Expect = 1.760e-11
Identity = 62/211 (29.38%), Postives = 94/211 (44.55%), Query Frame = 1 
Query:  100 DVKELLIMNLEVRMALRDDAFCGAPWPTHFLGIGEDGCGNIYCIAANDSACAVQMFDHESNVFEDVTDSLPAYFEYISSIISLLKSTSEDCTGSSVRPEIESTLSPDVVFVARTDVPRESVLDPISMSEWLSLVESDPELELREFRAIVNPFRQEEIRSECPGLAVLESGTSGQEFQFSCGRVMVRCPDPAALQKLK-QIAEALDAKVIKG 729
            DVK L ++NLE+   L +           F  +  DGCGN Y +  N  A  V +  H+    E     L  +          LK+  ++C        I   L    + + RTD+P ES+L+PI + EWL  +E+   +    +R   NPF  E  R + PG AV E+     E+    GRV+    +     +L  ++AE L+A +IKG
Sbjct:   32 DVKTLCVLNLELWSNLNESEI-----KNRFF-LSGDGCGNYYFVETNRDA-EVFLLSHDPVGIEKTGMVLDQF----------LKNAVQECP-------IMQDLEQGELAICRTDIPGESILNPIMLDEWLQAIENVQGINHLGYREGKNPFTGEVHRFDIPGYAVAETS----EYSLCLGRVLTM--ESIGNNELAFKLAEELEANLIKG 212
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BLAST of mRNA_M-pyrifera_M_contig92933.21490.1 vs. uniprot
Match: A0A368W8R8_9BACL (Uncharacterized protein n=1 Tax=Paenibacillus prosopidis TaxID=630520 RepID=A0A368W8R8_9BACL)

HSP 1 Score: 55.5 bits (132), Expect = 2.070e-6
Identity = 34/104 (32.69%), Postives = 56/104 (53.85%), Query Frame = 1 
Query:  424 VFVARTDVPRESVLDPISMSEWLSLVESDPELELREFRAIVNPFRQEEIRSECPGLAVLESGTSGQE----FQFSCGRVMVRCPDPAALQKLKQIAEALDAKVI 723
            + + R +   ES   PIS+SEW  ++  DP+L L +   + +P     +R E  G+AV       +E    F +  GR++V+ P+   + K+K+IAE L+A VI
Sbjct:    5 IHITRAEWWGESEDHPISLSEWQEIINGDPQLRLEKAAEMKSPNGMT-LRYENQGIAVCIMEDEDEEYPVYFDYRDGRIVVKNPNDQIINKMKEIAEKLNASVI 107
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BLAST of mRNA_M-pyrifera_M_contig92933.21490.1 vs. uniprot
Match: UPI0013699678 (hypothetical protein n=1 Tax=Clostridium sp. C8-1-8 TaxID=2698831 RepID=UPI0013699678)

HSP 1 Score: 52.4 bits (124), Expect = 2.770e-5
Identity = 28/104 (26.92%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:  424 VFVARTDVPRESVLDPISMSEWLSLVESDPELELREFRAIVNPFRQEEIRSECPGLAVL----ESGTSGQEFQFSCGRVMVRCPDPAALQKLKQIAEALDAKVI 723
            + + +++ P E+   PI++ EW+SLVE+D E++++     +NP  +E+I  +    AV     E  T    F ++ G++     +   ++K+K+IA  L  +V+
Sbjct:    5 IHIIKSNYPWEASKQPITLEEWISLVEADMEMKMKSEFEDINPITKEKIIIKLENTAVYTYNYEGNTCEVLFTYNRGKISGAYVNDKVIEKMKEIATKLGCRVV 108
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92933.21490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001EE797931.270e-4139.33SMI1/KNR4 family protein n=1 Tax=Rubinisphaera sp.... [more]
A0A853I4Z7_9GAMM1.760e-1129.38Uncharacterized protein n=1 Tax=Endozoicomonas sp.... [more]
A0A368W8R8_9BACL2.070e-632.69Uncharacterized protein n=1 Tax=Paenibacillus pros... [more]
UPI00136996782.770e-526.92hypothetical protein n=1 Tax=Clostridium sp. C8-1-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92933contigM-pyrifera_M_contig92933:21..758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size738
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.5750773-CDS-M-pyrifera_M_contig92933:20..7581622816842.5750773-CDS-M-pyrifera_M_contig92933:20..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92933 21..758 -
1692278210.8149655-CDS-M-pyrifera_M_contig92933:20..7581692278210.8149655-CDS-M-pyrifera_M_contig92933:20..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92933 21..758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92933.21490.1prot_M-pyrifera_M_contig92933.21490.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92933 21..758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92933.21490.1

>prot_M-pyrifera_M_contig92933.21490.1 ID=prot_M-pyrifera_M_contig92933.21490.1|Name=mRNA_M-pyrifera_M_contig92933.21490.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=246bp
EQRLSLSLPEPYREALLDGVTIDGSDPAPYILQDVKELLIMNLEVRMALR
DDAFCGAPWPTHFLGIGEDGCGNIYCIAANDSACAVQMFDHESNVFEDVT
DSLPAYFEYISSIISLLKSTSEDCTGSSVRPEIESTLSPDVVFVARTDVP
RESVLDPISMSEWLSLVESDPELELREFRAIVNPFRQEEIRSECPGLAVL
ESGTSGQEFQFSCGRVMVRCPDPAALQKLKQIAEALDAKVIKGWQ*
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mRNA from alignment at M-pyrifera_M_contig92933:21..758-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92933.21490.1 ID=mRNA_M-pyrifera_M_contig92933.21490.1|Name=mRNA_M-pyrifera_M_contig92933.21490.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig92933:21..758- (Macrocystis pyrifera P11B4 male)
GAGCAACGTCTCAGCCTCTCCCTGCCGGAGCCTTATCGAGAAGCGTTACT
CGACGGCGTTACGATTGATGGATCAGATCCCGCGCCGTACATCCTGCAGG
ATGTCAAGGAATTGCTGATCATGAATCTTGAAGTACGCATGGCGCTGCGT
GACGATGCTTTCTGCGGTGCGCCATGGCCCACGCATTTTCTTGGCATCGG
CGAAGATGGTTGCGGAAACATTTACTGCATTGCGGCAAATGACTCCGCAT
GCGCTGTGCAAATGTTTGATCACGAGAGCAACGTGTTTGAAGATGTCACT
GACAGCTTGCCCGCATATTTTGAGTACATTTCCTCGATTATCAGTCTTCT
CAAGTCAACGTCCGAAGACTGCACCGGCTCTTCGGTCCGACCAGAGATTG
AATCGACACTATCTCCCGATGTTGTTTTCGTTGCCCGCACAGACGTACCA
CGTGAGAGCGTTCTTGATCCGATCTCGATGTCCGAATGGCTATCGCTTGT
TGAGTCTGATCCAGAACTGGAGCTGCGCGAATTTCGCGCGATCGTCAATC
CATTTAGACAAGAAGAAATACGGAGTGAGTGTCCTGGATTGGCAGTCTTG
GAGAGCGGCACGTCAGGACAAGAGTTTCAGTTCAGCTGCGGTCGTGTCAT
GGTTCGCTGTCCTGATCCCGCCGCTCTCCAAAAGCTCAAGCAGATCGCGG
AAGCCTTGGATGCTAAAGTGATCAAAGGATGGCAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92933:21..758-

>mRNA_M-pyrifera_M_contig92933.21490.1 ID=mRNA_M-pyrifera_M_contig92933.21490.1|Name=mRNA_M-pyrifera_M_contig92933.21490.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1476bp|location=Sequence derived from alignment at M-pyrifera_M_contig92933:21..758- (Macrocystis pyrifera P11B4 male)
GAGCAACGTCTCAGCCTCTCCCTGCCGGAGCCTTATCGAGAAGCGTTACT
CGACGGCGTTACGATTGATGGATCAGATCCCGCGCCGTACATCCTGCAGG
ATGTCAAGGAATTGCTGATCATGAATCTTGAAGTACGCATGGCGCTGCGT
GACGATGCTTTCTGCGGTGCGCCATGGCCCACGCATTTTCTTGGCATCGG
CGAAGATGGTTGCGGAAACATTTACTGCATTGCGGCAAATGACTCCGCAT
GCGCTGTGCAAATGTTTGATCACGAGAGCAACGTGTTTGAAGATGTCACT
GACAGCTTGCCCGCATATTTTGAGTACATTTCCTCGATTATCAGTCTTCT
CAAGTCAACGTCCGAAGACTGCACCGGCTCTTCGGTCCGACCAGAGATTG
AATCGACACTATCTCCCGATGTTGTTTTCGTTGCCCGCACAGACGTACCA
CGTGAGAGCGTTCTTGATCCGATCTCGATGTCCGAATGGCTATCGCTTGT
TGAGTCTGATCCAGAACTGGAGCTGCGCGAATTTCGCGCGATCGTCAATC
CATTTAGACAAGAAGAAATACGGAGTGAGTGTCCTGGATTGGCAGTCTTG
GAGAGCGGCACGTCAGGACAAGAGTTTCAGTTCAGCTGCGGTCGTGTCAT
GGTTCGCTGTCCTGATCCCGCCGCTCTCCAAAAGCTCAAGCAGATCGCGG
AAGCCTTGGATGCTAAAGTGATCAAAGGATGGCAGTAAGAGCAACGTCTC
AGCCTCTCCCTGCCGGAGCCTTATCGAGAAGCGTTACTCGACGGCGTTAC
GATTGATGGATCAGATCCCGCGCCGTACATCCTGCAGGATGTCAAGGAAT
TGCTGATCATGAATCTTGAAGTACGCATGGCGCTGCGTGACGATGCTTTC
TGCGGTGCGCCATGGCCCACGCATTTTCTTGGCATCGGCGAAGATGGTTG
CGGAAACATTTACTGCATTGCGGCAAATGACTCCGCATGCGCTGTGCAAA
TGTTTGATCACGAGAGCAACGTGTTTGAAGATGTCACTGACAGCTTGCCC
GCATATTTTGAGTACATTTCCTCGATTATCAGTCTTCTCAAGTCAACGTC
CGAAGACTGCACCGGCTCTTCGGTCCGACCAGAGATTGAATCGACACTAT
CTCCCGATGTTGTTTTCGTTGCCCGCACAGACGTACCACGTGAGAGCGTT
CTTGATCCGATCTCGATGTCCGAATGGCTATCGCTTGTTGAGTCTGATCC
AGAACTGGAGCTGCGCGAATTTCGCGCGATCGTCAATCCATTTAGACAAG
AAGAAATACGGAGTGAGTGTCCTGGATTGGCAGTCTTGGAGAGCGGCACG
TCAGGACAAGAGTTTCAGTTCAGCTGCGGTCGTGTCATGGTTCGCTGTCC
TGATCCCGCCGCTCTCCAAAAGCTCAAGCAGATCGCGGAAGCCTTGGATG
CTAAAGTGATCAAAGGATGGCAGTAA
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