mRNA_M-pyrifera_M_contig92927.21489.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92927.21489.1
Unique NamemRNA_M-pyrifera_M_contig92927.21489.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Match: A0A5A8DBD9_CAFRO (TM2 domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DBD9_CAFRO)

HSP 1 Score: 78.6 bits (192), Expect = 3.230e-17
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 AWLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVEEYNAILFQREF 183
            A+ LW  LGIFG HRFY+G W++GLLWM + GL LVGWI DAW + D V E+N   +   F
Sbjct:    9 AYALWLVLGIFGGHRFYLGHWRTGLLWMCTCGLFLVGWITDAWRIPDLVNEHNREAWDHHF 69          
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Match: UPI001F5BD88F (TM2 domain-containing protein n=2 Tax=Thiococcus pfennigii TaxID=1057 RepID=UPI001F5BD88F)

HSP 1 Score: 78.6 bits (192), Expect = 4.030e-17
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 AWLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVEEYNA 162
            AW+L  FLG+FG HRFY+G+W +GLLW+ +GGL LVG++ D W L+D ++E NA
Sbjct:   79 AWILLTFLGLFGVHRFYLGKWPTGLLWLLTGGLFLVGYVYDYWTLNDQIDEVNA 132          
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Match: A0A1A9F6F7_9GAMM (Uncharacterized protein n=3 Tax=Marinobacterium TaxID=48075 RepID=A0A1A9F6F7_9GAMM)

HSP 1 Score: 75.5 bits (184), Expect = 4.740e-16
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 AWLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVEEYNA 162
            AW+L  FLGIFGAHRFY+G+W SGLL++ +GGLLL+G I D W L+D V E N 
Sbjct:   66 AWILLTFLGIFGAHRFYMGKWLSGLLYLLTGGLLLIGVIYDFWTLNDQVSENNG 119          
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Match: A0A1P8WBM5_9PLAN (TM2 domain-containing protein n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WBM5_9PLAN)

HSP 1 Score: 75.5 bits (184), Expect = 7.140e-16
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 AWLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVEEYNAILFQREFD 186
            AWLL  F+G+FG HR Y+G+W SGL+W+ +GGL LVGW+ D W L++ V E N  L   + D
Sbjct:   78 AWLLLTFVGVFGIHRLYLGKWISGLIWLATGGLFLVGWLYDLWTLNEQVNEENQHLSYHQHD 139          
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Match: A0A3E0PZE5_9BACT (NINE protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PZE5_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 7.660e-16
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 AWLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVEEYN 159
            AWLL  FLG FG HRFY+G+W +GLLW+ +GGL L+GW+ D W L+  V E N
Sbjct:   86 AWLLLTFLGAFGVHRFYLGKWLTGLLWLVTGGLFLIGWLYDLWTLNGQVSEVN 138          
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Match: A0A6M0JW12_9GAMM (TM2 domain-containing protein n=1 Tax=Thiorhodococcus minor TaxID=57489 RepID=A0A6M0JW12_9GAMM)

HSP 1 Score: 75.9 bits (185), Expect = 1.090e-15
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 AWLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVEEYNA 162
            AW+L  FLGIFG HRFY+G+W +GL+W+ +GGL LVG+I D W L+D ++E +A
Sbjct:   77 AWILLTFLGIFGIHRFYMGKWITGLIWLLTGGLFLVGYIYDYWTLNDQIDELSA 130          
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Match: A0A3N5F6G0_9BURK (TM2 domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3N5F6G0_9BURK)

HSP 1 Score: 74.3 bits (181), Expect = 1.560e-15
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 AWLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVEEYN 159
            AWLL  FLG+FG HR Y+G+W +GLLW+ +GGL L+GW+ D W L+  ++E N
Sbjct:   78 AWLLQTFLGVFGLHRLYMGKWLTGLLWLVTGGLFLIGWLYDFWTLNGQIDEIN 130          
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Match: L0H0B3_9GAMM (Putative membrane protein n=1 Tax=Thioflavicoccus mobilis 8321 TaxID=765912 RepID=L0H0B3_9GAMM)

HSP 1 Score: 74.3 bits (181), Expect = 1.640e-15
Identity = 28/54 (51.85%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 AWLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVEEYNA 162
            AW+L  FLG+FG HRFY+G+W +GL+W+ +GGL L+G++ D W L+D ++E N 
Sbjct:   77 AWILLTFLGLFGVHRFYLGKWLTGLIWLLTGGLFLLGYVYDYWTLNDQIDESNG 130          
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Match: A0A8J6UQ52_9DELT (TM2 domain-containing protein n=1 Tax=Pelovirga terrestris TaxID=2771352 RepID=A0A8J6UQ52_9DELT)

HSP 1 Score: 74.3 bits (181), Expect = 1.680e-15
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    4 WLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVEEYN 159
            W+L  FLGIFG HRFY+G+W +GL+W F+GGL L+G++ D W L++ V+E N
Sbjct:   77 WILMTFLGIFGVHRFYLGKWITGLIWFFTGGLFLIGYLYDFWTLNEQVDEVN 128          
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Match: UPI001FE98F66 (TM2 domain-containing protein n=1 Tax=Allochromatium palmeri TaxID=231048 RepID=UPI001FE98F66)

HSP 1 Score: 72.0 bits (175), Expect = 3.230e-15
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    4 WLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVEEYN 159
            W+L  FLG+FG HRFY+G+W +GL+W+ +GGL LVG++ D W L+D +E  N
Sbjct:   20 WILLTFLGLFGVHRFYLGKWITGLIWLLTGGLFLVGYLYDYWTLNDQIETVN 71          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92927.21489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DBD9_CAFRO3.230e-1755.74TM2 domain-containing protein n=3 Tax=Cafeteria ro... [more]
UPI001F5BD88F4.030e-1757.41TM2 domain-containing protein n=2 Tax=Thiococcus p... [more]
A0A1A9F6F7_9GAMM4.740e-1662.96Uncharacterized protein n=3 Tax=Marinobacterium Ta... [more]
A0A1P8WBM5_9PLAN7.140e-1651.61TM2 domain-containing protein n=1 Tax=Fuerstiella ... [more]
A0A3E0PZE5_9BACT7.660e-1658.49NINE protein n=1 Tax=Planctomycetes bacterium TaxI... [more]
A0A6M0JW12_9GAMM1.090e-1557.41TM2 domain-containing protein n=1 Tax=Thiorhodococ... [more]
A0A3N5F6G0_9BURK1.560e-1554.72TM2 domain-containing protein n=1 Tax=Burkholderia... [more]
L0H0B3_9GAMM1.640e-1551.85Putative membrane protein n=1 Tax=Thioflavicoccus ... [more]
A0A8J6UQ52_9DELT1.680e-1555.77TM2 domain-containing protein n=1 Tax=Pelovirga te... [more]
UPI001FE98F663.230e-1553.85TM2 domain-containing protein n=1 Tax=Allochromati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92927contigM-pyrifera_M_contig92927:57..347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score74.7
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog765912.Thimo_2325
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.TM2 domain
EggNOG OGs1RHUU@1224,1S694@1236,1X0TQ@135613,COG2314@1,COG2314@2
COG Functional cat.S
Best tax levelChromatiales
Best eggNOG OGNA|NA|NA
Exons2
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.5303411-CDS-M-pyrifera_M_contig92927:56..981622816842.5303411-CDS-M-pyrifera_M_contig92927:56..98Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92927 57..98 +
1692278210.7796073-CDS-M-pyrifera_M_contig92927:56..981692278210.7796073-CDS-M-pyrifera_M_contig92927:56..98Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92927 57..98 +
1622816842.5424128-CDS-M-pyrifera_M_contig92927:203..3471622816842.5424128-CDS-M-pyrifera_M_contig92927:203..347Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92927 204..347 +
1692278210.7984927-CDS-M-pyrifera_M_contig92927:203..3471692278210.7984927-CDS-M-pyrifera_M_contig92927:203..347Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92927 204..347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92927.21489.1prot_M-pyrifera_M_contig92927.21489.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92927 57..347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92927.21489.1

>prot_M-pyrifera_M_contig92927.21489.1 ID=prot_M-pyrifera_M_contig92927.21489.1|Name=mRNA_M-pyrifera_M_contig92927.21489.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
AWLLWAFLGIFGAHRFYVGRWQSGLLWMFSGGLLLVGWIIDAWLLSDFVE
EYNAILFQREFD
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mRNA from alignment at M-pyrifera_M_contig92927:57..347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92927.21489.1 ID=mRNA_M-pyrifera_M_contig92927.21489.1|Name=mRNA_M-pyrifera_M_contig92927.21489.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig92927:57..347+ (Macrocystis pyrifera P11B4 male)
GCGTGGCTTTTGTGGGCGTTTCTGGGGATTTTTGGAGCACATGTAAGTGA TGTGGGTTTGGAGAAGTTGATGGTTTGAGGTGTAGGGGGCGAGAGGGTAT GGGAATGGAGTTGAATGGGACGAGTGTTGGGTTTTGATGGATTGCAGCGA TTCTATGTTGGTCGATGGCAAAGTGGACTATTGTGGATGTTTTCTGGAGG TCTTTTGTTGGTCGGATGGATCATCGATGCGTGGCTTTTGTCCGATTTTG TCGAAGAATACAATGCAATCCTTTTCCAGAGAGAGTTTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92927:57..347+

>mRNA_M-pyrifera_M_contig92927.21489.1 ID=mRNA_M-pyrifera_M_contig92927.21489.1|Name=mRNA_M-pyrifera_M_contig92927.21489.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig92927:57..347+ (Macrocystis pyrifera P11B4 male)
GCGTGGCTTTTGTGGGCGTTTCTGGGGATTTTTGGAGCACATGCGTGGCT
TTTGTGGGCGTTTCTGGGGATTTTTGGAGCACATCGATTCTATGTTGGTC
GATGGCAAAGTGGACTATTGTGGATGTTTTCTGGAGGTCTTTTGTTGGTC
GGATGGATCATCGATGCGTGGCTTTTGTCCGATTTTGTCGAAGAATACAA
TGCAATCCTTTTCCAGAGAGAGTTTGATCGATTCTATGTTGGTCGATGGC
AAAGTGGACTATTGTGGATGTTTTCTGGAGGTCTTTTGTTGGTCGGATGG
ATCATCGATGCGTGGCTTTTGTCCGATTTTGTCGAAGAATACAATGCAAT
CCTTTTCCAGAGAGAGTTTGAT
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