mRNA_M-pyrifera_M_contig92870.21479.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92870.21479.1
Unique NamemRNA_M-pyrifera_M_contig92870.21479.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92870.21479.1 vs. uniprot
Match: A0A2E7KIZ8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KIZ8_9PLAN)

HSP 1 Score: 320 bits (819), Expect = 1.530e-109
Identity = 176/180 (97.78%), Postives = 177/180 (98.33%), Query Frame = 1 
Query:    1 MINSDKETLTFLCEDQFSFPIVFEKLKALFIDFPKTIFGVVYASCVICFISLRYFPNNIIAFIVVALLLFGVISLPSSFSEIRTIVEIFLIAIAGIAALLFVAIILSIFIPPEVSFEKERIKIGGKSIKSKEIIRIQITETPKSYHIILHYRDSDAKSDSQDTLYLVINDSTKEKLSKMS 540
            MINSDKETLTFLCEDQFSFPIVFEKLKALFIDFPKTIFGVVYASCVICFISLRYFPNNIIAFIVVALLLFGVISLPSSFSEIRTIVEIFLIAIAGIAALLFVAIIL IFIPPEVSFEKERIKIGGKSIKSKEIIRIQITETPKSYHI LHYRDSDAKSDSQDTLYLV N+STKEKLSKMS
Sbjct:    1 MINSDKETLTFLCEDQFSFPIVFEKLKALFIDFPKTIFGVVYASCVICFISLRYFPNNIIAFIVVALLLFGVISLPSSFSEIRTIVEIFLIAIAGIAALLFVAIILLIFIPPEVSFEKERIKIGGKSIKSKEIIRIQITETPKSYHINLHYRDSDAKSDSQDTLYLVFNESTKEKLSKMS 180
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92870.21479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E7KIZ8_9PLAN1.530e-10997.78Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92870contigM-pyrifera_M_contig92870:1..540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size540
Cds size540
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.7879765-CDS-M-pyrifera_M_contig92870:0..5401622816841.7879765-CDS-M-pyrifera_M_contig92870:0..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92870 1..540 -
1692278210.176372-CDS-M-pyrifera_M_contig92870:0..5401692278210.176372-CDS-M-pyrifera_M_contig92870:0..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92870 1..540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92870.21479.1prot_M-pyrifera_M_contig92870.21479.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92870 1..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92870.21479.1

>prot_M-pyrifera_M_contig92870.21479.1 ID=prot_M-pyrifera_M_contig92870.21479.1|Name=mRNA_M-pyrifera_M_contig92870.21479.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
MINSDKETLTFLCEDQFSFPIVFEKLKALFIDFPKTIFGVVYASCVICFI
SLRYFPNNIIAFIVVALLLFGVISLPSSFSEIRTIVEIFLIAIAGIAALL
FVAIILSIFIPPEVSFEKERIKIGGKSIKSKEIIRIQITETPKSYHIILH
YRDSDAKSDSQDTLYLVINDSTKEKLSKMS
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mRNA from alignment at M-pyrifera_M_contig92870:1..540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92870.21479.1 ID=mRNA_M-pyrifera_M_contig92870.21479.1|Name=mRNA_M-pyrifera_M_contig92870.21479.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig92870:1..540- (Macrocystis pyrifera P11B4 male)
ATGATAAATTCTGATAAAGAAACACTGACGTTTCTCTGTGAAGATCAATT
CAGTTTTCCGATTGTGTTTGAGAAACTGAAAGCTCTCTTTATAGATTTTC
CAAAAACAATTTTTGGAGTTGTATATGCATCATGCGTTATATGCTTTATT
TCCCTCAGATATTTCCCTAATAACATCATAGCGTTTATAGTCGTTGCTTT
GCTGCTTTTCGGTGTCATCTCACTCCCCAGCAGTTTTAGCGAAATTCGGA
CTATCGTAGAAATATTTCTTATTGCCATTGCCGGCATTGCTGCACTCTTA
TTTGTAGCGATCATTCTCTCGATCTTTATCCCCCCGGAAGTCTCTTTTGA
AAAGGAGAGAATTAAAATTGGGGGAAAATCCATCAAATCAAAAGAAATTA
TCCGGATTCAGATTACTGAGACCCCAAAGTCATATCACATCATTCTTCAT
TACAGGGATTCAGACGCCAAATCTGATTCTCAAGACACTTTATACCTTGT
AATTAATGATTCCACCAAAGAAAAGTTGAGTAAAATGAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92870:1..540-

>mRNA_M-pyrifera_M_contig92870.21479.1 ID=mRNA_M-pyrifera_M_contig92870.21479.1|Name=mRNA_M-pyrifera_M_contig92870.21479.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig92870:1..540- (Macrocystis pyrifera P11B4 male)
ATGATAAATTCTGATAAAGAAACACTGACGTTTCTCTGTGAAGATCAATT
CAGTTTTCCGATTGTGTTTGAGAAACTGAAAGCTCTCTTTATAGATTTTC
CAAAAACAATTTTTGGAGTTGTATATGCATCATGCGTTATATGCTTTATT
TCCCTCAGATATTTCCCTAATAACATCATAGCGTTTATAGTCGTTGCTTT
GCTGCTTTTCGGTGTCATCTCACTCCCCAGCAGTTTTAGCGAAATTCGGA
CTATCGTAGAAATATTTCTTATTGCCATTGCCGGCATTGCTGCACTCTTA
TTTGTAGCGATCATTCTCTCGATCTTTATCCCCCCGGAAGTCTCTTTTGA
AAAGGAGAGAATTAAAATTGGGGGAAAATCCATCAAATCAAAAGAAATTA
TCCGGATTCAGATTACTGAGACCCCAAAGTCATATCACATCATTCTTCAT
TACAGGGATTCAGACGCCAAATCTGATTCTCAAGACACTTTATACCTTGT
AATTAATGATTCCACCAAAGAAAAGTTGAGTAAAATGAGTATGATAAATT
CTGATAAAGAAACACTGACGTTTCTCTGTGAAGATCAATTCAGTTTTCCG
ATTGTGTTTGAGAAACTGAAAGCTCTCTTTATAGATTTTCCAAAAACAAT
TTTTGGAGTTGTATATGCATCATGCGTTATATGCTTTATTTCCCTCAGAT
ATTTCCCTAATAACATCATAGCGTTTATAGTCGTTGCTTTGCTGCTTTTC
GGTGTCATCTCACTCCCCAGCAGTTTTAGCGAAATTCGGACTATCGTAGA
AATATTTCTTATTGCCATTGCCGGCATTGCTGCACTCTTATTTGTAGCGA
TCATTCTCTCGATCTTTATCCCCCCGGAAGTCTCTTTTGAAAAGGAGAGA
ATTAAAATTGGGGGAAAATCCATCAAATCAAAAGAAATTATCCGGATTCA
GATTACTGAGACCCCAAAGTCATATCACATCATTCTTCATTACAGGGATT
CAGACGCCAAATCTGATTCTCAAGACACTTTATACCTTGTAATTAATGAT
TCCACCAAAGAAAAGTTGAGTAAAATGAGT
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