mRNA_M-pyrifera_M_contig9282.21463.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9282.21463.1
Unique NamemRNA_M-pyrifera_M_contig9282.21463.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9282.21463.1 vs. uniprot
Match: A0A6H5K3X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.740e-27
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 VQPFTEKEPAAAARSRHFIAEGIPLRCDRCHQDVVGPLFRCIHCPSFVCCLECQ 162
            V PFTE+EPAAAARSRHFIA+GI LRCDRCH+DVVGPLFRC+HCPSF CCLECQ
Sbjct:  625 VTPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQ 678
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BLAST of mRNA_M-pyrifera_M_contig9282.21463.1 vs. uniprot
Match: A0A812RJH2_9DINO (RNF14 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812RJH2_9DINO)

HSP 1 Score: 52.4 bits (124), Expect = 1.850e-6
Identity = 19/29 (65.52%), Postives = 21/29 (72.41%), Query Frame = 1 
Query:   76 RCDRCHQDVVGPLFRCIHCPSFVCCLECQ 162
            RC RCHQD+VGP FRCIHCP +  C  C 
Sbjct:  306 RCSRCHQDIVGPRFRCIHCPDYNLCASCD 334
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BLAST of mRNA_M-pyrifera_M_contig9282.21463.1 vs. uniprot
Match: A0A812YGP9_9DINO (RNF14 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812YGP9_9DINO)

HSP 1 Score: 49.3 bits (116), Expect = 2.270e-5
Identity = 18/29 (62.07%), Postives = 20/29 (68.97%), Query Frame = 1 
Query:   76 RCDRCHQDVVGPLFRCIHCPSFVCCLECQ 162
            RC RC QD+VGP FRCIHCP +  C  C 
Sbjct:  316 RCSRCQQDIVGPRFRCIHCPDYNLCASCD 344
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BLAST of mRNA_M-pyrifera_M_contig9282.21463.1 vs. uniprot
Match: A0A813CMB1_9DINO (Hsdl2 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CMB1_9DINO)

HSP 1 Score: 49.3 bits (116), Expect = 2.280e-5
Identity = 18/29 (62.07%), Postives = 20/29 (68.97%), Query Frame = 1 
Query:   76 RCDRCHQDVVGPLFRCIHCPSFVCCLECQ 162
            RC RC QD+VGP FRCIHCP +  C  C 
Sbjct:  414 RCSRCRQDIVGPRFRCIHCPDYNLCASCD 442
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9282.21463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K3X2_9PHAE4.740e-2787.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A812RJH2_9DINO1.850e-665.52RNF14 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]
A0A812YGP9_9DINO2.270e-562.07RNF14 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A813CMB1_9DINO2.280e-562.07Hsdl2 protein n=1 Tax=Symbiodinium necroappetens T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9282contigM-pyrifera_M_contig9282:337..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816841.1149325-CDS-M-pyrifera_M_contig9282:336..4981622816841.1149325-CDS-M-pyrifera_M_contig9282:336..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9282 337..498 +
1692278209.8247418-CDS-M-pyrifera_M_contig9282:336..4981692278209.8247418-CDS-M-pyrifera_M_contig9282:336..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9282 337..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9282.21463.1prot_M-pyrifera_M_contig9282.21463.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9282 337..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9282.21463.1

>prot_M-pyrifera_M_contig9282.21463.1 ID=prot_M-pyrifera_M_contig9282.21463.1|Name=mRNA_M-pyrifera_M_contig9282.21463.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
VQPFTEKEPAAAARSRHFIAEGIPLRCDRCHQDVVGPLFRCIHCPSFVCC
LECQ
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mRNA from alignment at M-pyrifera_M_contig9282:337..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9282.21463.1 ID=mRNA_M-pyrifera_M_contig9282.21463.1|Name=mRNA_M-pyrifera_M_contig9282.21463.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig9282:337..498+ (Macrocystis pyrifera P11B4 male)
GTGCAGCCGTTTACAGAGAAAGAACCCGCGGCTGCGGCGCGCTCCAGGCA
CTTCATCGCGGAGGGTATTCCGCTTCGCTGTGACCGCTGCCACCAGGACG
TGGTCGGACCCCTGTTCCGCTGTATACACTGCCCGTCGTTCGTCTGCTGC
CTCGAGTGTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9282:337..498+

>mRNA_M-pyrifera_M_contig9282.21463.1 ID=mRNA_M-pyrifera_M_contig9282.21463.1|Name=mRNA_M-pyrifera_M_contig9282.21463.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig9282:337..498+ (Macrocystis pyrifera P11B4 male)
GTGCAGCCGTTTACAGAGAAAGAACCCGCGGCTGCGGCGCGCTCCAGGCA
CTTCATCGCGGAGGGTATTCCGCTTCGCTGTGACCGCTGCCACCAGGACG
TGGTCGGACCCCTGTTCCGCTGTATACACTGCCCGTCGTTCGTCTGCTGC
CTCGAGTGTCAGGTGCAGCCGTTTACAGAGAAAGAACCCGCGGCTGCGGC
GCGCTCCAGGCACTTCATCGCGGAGGGTATTCCGCTTCGCTGTGACCGCT
GCCACCAGGACGTGGTCGGACCCCTGTTCCGCTGTATACACTGCCCGTCG
TTCGTCTGCTGCCTCGAGTGTCAG
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