mRNA_M-pyrifera_M_contig92698.21442.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92698.21442.1
Unique NamemRNA_M-pyrifera_M_contig92698.21442.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92698.21442.1 vs. uniprot
Match: A0A7S1K2W0_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K2W0_9ALVE)

HSP 1 Score: 52.4 bits (124), Expect = 3.230e-5
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:  226 DWERDSRGDGVLDYQEFTVGVFQLADFWTPVISEHAYAAFVNALTDKLT 372
            DW  DSRG   L++  F    FQLAD WTPVIS+ AY+ F+  L  ++T
Sbjct:   41 DWLHDSRGADALEFTRFFEAFFQLADVWTPVISDKAYSDFLTKLFKRIT 89
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BLAST of mRNA_M-pyrifera_M_contig92698.21442.1 vs. uniprot
Match: A0A0G4FQA8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FQA8_VITBC)

HSP 1 Score: 52.4 bits (124), Expect = 3.980e-5
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:  226 DWERDSRGDGVLDYQEFTVGVFQLADFWTPVISEHAYAAFVNALTDKLT 372
            DW  DSRG   L++  F    FQLAD WTPVIS+ AY+ F+  L  ++T
Sbjct:  100 DWLHDSRGADALEFTRFFEAFFQLADVWTPVISDKAYSDFLTKLFKRIT 148
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92698.21442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1K2W0_9ALVE3.230e-548.98Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A0G4FQA8_VITBC3.980e-548.98Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92698contigM-pyrifera_M_contig92698:176..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue9.5e-07
Seed eggNOG ortholog42099.EPrPV00000021384
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.function. Source PGD
EggNOG OGs1MC32@121069,2EAAQ@1,2SGJ5@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816840.0552633-CDS-M-pyrifera_M_contig92698:175..5861622816840.0552633-CDS-M-pyrifera_M_contig92698:175..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92698 176..586 -
1692278209.2264724-CDS-M-pyrifera_M_contig92698:175..5861692278209.2264724-CDS-M-pyrifera_M_contig92698:175..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92698 176..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92698.21442.1prot_M-pyrifera_M_contig92698.21442.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92698 176..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92698.21442.1

>prot_M-pyrifera_M_contig92698.21442.1 ID=prot_M-pyrifera_M_contig92698.21442.1|Name=mRNA_M-pyrifera_M_contig92698.21442.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
FYSRKALVTREAIRFSRTFQNAMLRLWRAFCATEGHTFMDETAYKLFFRQ
VQTELGSHVGETGGTEEAEDDALLRDWERDSRGDGVLDYQEFTVGVFQLA
DFWTPVISEHAYAAFVNALTDKLTRVNSRGVLVLRFR
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mRNA from alignment at M-pyrifera_M_contig92698:176..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92698.21442.1 ID=mRNA_M-pyrifera_M_contig92698.21442.1|Name=mRNA_M-pyrifera_M_contig92698.21442.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig92698:176..586- (Macrocystis pyrifera P11B4 male)
TTCTACAGTCGGAAAGCGCTGGTGACCCGAGAAGCGATTCGATTCTCAAG
AACATTTCAAAACGCAATGCTACGGTTGTGGAGGGCGTTCTGTGCTACGG
AGGGACACACGTTCATGGATGAAACAGCGTACAAGCTGTTTTTTCGCCAA
GTACAGACAGAATTAGGGAGTCATGTAGGGGAAACGGGGGGCACTGAGGA
AGCGGAGGATGATGCTTTGTTGCGAGATTGGGAAAGAGATTCAAGAGGGG
ATGGGGTGTTGGATTATCAAGAATTTACTGTTGGGGTGTTTCAATTGGCA
GATTTCTGGACTCCAGTGATTTCCGAACATGCCTATGCAGCCTTTGTCAA
TGCTCTCACTGACAAACTCACCCGTGTCAACTCTCGTGGTGTTCTTGTGC
TTCGATTTCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92698:176..586-

>mRNA_M-pyrifera_M_contig92698.21442.1 ID=mRNA_M-pyrifera_M_contig92698.21442.1|Name=mRNA_M-pyrifera_M_contig92698.21442.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig92698:176..586- (Macrocystis pyrifera P11B4 male)
TTCTACAGTCGGAAAGCGCTGGTGACCCGAGAAGCGATTCGATTCTCAAG
AACATTTCAAAACGCAATGCTACGGTTGTGGAGGGCGTTCTGTGCTACGG
AGGGACACACGTTCATGGATGAAACAGCGTACAAGCTGTTTTTTCGCCAA
GTACAGACAGAATTAGGGAGTCATGTAGGGGAAACGGGGGGCACTGAGGA
AGCGGAGGATGATGCTTTGTTGCGAGATTGGGAAAGAGATTCAAGAGGGG
ATGGGGTGTTGGATTATCAAGAATTTACTGTTGGGGTGTTTCAATTGGCA
GATTTCTGGACTCCAGTGATTTCCGAACATGCCTATGCAGCCTTTGTCAA
TGCTCTCACTGACAAACTCACCCGTGTCAACTCTCGTGGTGTTCTTGTGC
TTCGATTTCGATTCTACAGTCGGAAAGCGCTGGTGACCCGAGAAGCGATT
CGATTCTCAAGAACATTTCAAAACGCAATGCTACGGTTGTGGAGGGCGTT
CTGTGCTACGGAGGGACACACGTTCATGGATGAAACAGCGTACAAGCTGT
TTTTTCGCCAAGTACAGACAGAATTAGGGAGTCATGTAGGGGAAACGGGG
GGCACTGAGGAAGCGGAGGATGATGCTTTGTTGCGAGATTGGGAAAGAGA
TTCAAGAGGGGATGGGGTGTTGGATTATCAAGAATTTACTGTTGGGGTGT
TTCAATTGGCAGATTTCTGGACTCCAGTGATTTCCGAACATGCCTATGCA
GCCTTTGTCAATGCTCTCACTGACAAACTCACCCGTGTCAACTCTCGTGG
TGTTCTTGTGCTTCGATTTCGA
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