mRNA_M-pyrifera_M_contig926.21421.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig926.21421.1
Unique NamemRNA_M-pyrifera_M_contig926.21421.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig926.21421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig926contigM-pyrifera_M_contig926:18223..18583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size361
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.8852239-CDS-M-pyrifera_M_contig926:18222..185821622816838.8852239-CDS-M-pyrifera_M_contig926:18222..18582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig926 18223..18582 +
1692278208.6211133-CDS-M-pyrifera_M_contig926:18222..185821692278208.6211133-CDS-M-pyrifera_M_contig926:18222..18582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig926 18223..18582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig926.21421.1prot_M-pyrifera_M_contig926.21421.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig926 18223..18582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig926.21421.1

>prot_M-pyrifera_M_contig926.21421.1 ID=prot_M-pyrifera_M_contig926.21421.1|Name=mRNA_M-pyrifera_M_contig926.21421.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
RCTRPFLTCFVRRSERGGAGSLTDVKCFFPSISAFGSRVRLSGFPPNNRK
TCATCFFRAFFCLLPFSFFFHLLSARTLFSRFVGAPNLPGMYWLLVLPIV
KEVVRVVQRWRRAMNTFFSY
back to top

mRNA from alignment at M-pyrifera_M_contig926:18223..18583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig926.21421.1 ID=mRNA_M-pyrifera_M_contig926.21421.1|Name=mRNA_M-pyrifera_M_contig926.21421.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=361bp|location=Sequence derived from alignment at M-pyrifera_M_contig926:18223..18583+ (Macrocystis pyrifera P11B4 male)
CGGTGCACCCGCCCTTTTTTAACGTGCTTCGTACGGCGGTCGGAGAGGGG
CGGTGCGGGGTCGCTCACAGATGTAAAGTGTTTTTTCCCTTCAATTTCTG
CCTTCGGTAGTCGGGTTCGCTTAAGTGGTTTTCCACCGAATAATAGAAAA
ACCTGTGCGACGTGTTTTTTTCGGGCTTTTTTTTGTTTGCTTCCCTTCTC
TTTCTTCTTTCATCTCCTTTCTGCGAGAACACTTTTCTCGCGCTTTGTCG
GTGCACCAAATTTACCCGGTATGTACTGGTTACTGGTTTTACCGATCGTC
AAGGAAGTTGTGCGAGTGGTGCAGCGCTGGCGTAGAGCAATGAACACGTT
TTTTTCATATC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig926:18223..18583+

>mRNA_M-pyrifera_M_contig926.21421.1 ID=mRNA_M-pyrifera_M_contig926.21421.1|Name=mRNA_M-pyrifera_M_contig926.21421.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig926:18223..18583+ (Macrocystis pyrifera P11B4 male)
CGGTGCACCCGCCCTTTTTTAACGTGCTTCGTACGGCGGTCGGAGAGGGG
CGGTGCGGGGTCGCTCACAGATGTAAAGTGTTTTTTCCCTTCAATTTCTG
CCTTCGGTAGTCGGGTTCGCTTAAGTGGTTTTCCACCGAATAATAGAAAA
ACCTGTGCGACGTGTTTTTTTCGGGCTTTTTTTTGTTTGCTTCCCTTCTC
TTTCTTCTTTCATCTCCTTTCTGCGAGAACACTTTTCTCGCGCTTTGTCG
GTGCACCAAATTTACCCGGTATGTACTGGTTACTGGTTTTACCGATCGTC
AAGGAAGTTGTGCGAGTGGTGCAGCGCTGGCGTAGAGCAATGAACACGTT
TTTTTCATATCGGTGCACCCGCCCTTTTTTAACGTGCTTCGTACGGCGGT
CGGAGAGGGGCGGTGCGGGGTCGCTCACAGATGTAAAGTGTTTTTTCCCT
TCAATTTCTGCCTTCGGTAGTCGGGTTCGCTTAAGTGGTTTTCCACCGAA
TAATAGAAAAACCTGTGCGACGTGTTTTTTTCGGGCTTTTTTTTGTTTGC
TTCCCTTCTCTTTCTTCTTTCATCTCCTTTCTGCGAGAACACTTTTCTCG
CGCTTTGTCGGTGCACCAAATTTACCCGGTATGTACTGGTTACTGGTTTT
ACCGATCGTCAAGGAAGTTGTGCGAGTGGTGCAGCGCTGGCGTAGAGCAA
TGAACACGTTTTTTTCATAT
back to top