mRNA_M-pyrifera_M_contig926.21418.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig926.21418.1
Unique NamemRNA_M-pyrifera_M_contig926.21418.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig926.21418.1 vs. uniprot
Match: A0A6H5JWV5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWV5_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 6.460e-101
Identity = 147/170 (86.47%), Postives = 152/170 (89.41%), Query Frame = 1 
Query:    1 MTVNAPWSTLRPNPRDQRERAAADANYGVGDGPHSTKDGETEIHWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRVIRDDGIGKFPTTALKTREFMRLTALSGTIFTGFFCTYQGVKYGAKLARGEDDFWNVLIASAGSFAPMLPFPAMRSRYPYAAILVAMDTLNNHIL 510
            MTVN PWSTLRPNPRDQRERAAA+   G G  P   KDGE EI WDVTDFGKRMAFGGIVGGVTGITFGAMDGHR IRDD +GKFPTTALKT+EF RLTALSGTIFTGFFCTYQG+KYGAKLAR EDDFWNVLIASAGSFAPML  PAMRSRYPYAAIL+AMDTLNNHIL
Sbjct:    1 MTVNVPWSTLRPNPRDQRERAAAEFPGG-GKAPPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIASAGSFAPMLVVPAMRSRYPYAAILIAMDTLNNHIL 169
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BLAST of mRNA_M-pyrifera_M_contig926.21418.1 vs. uniprot
Match: A0A835YQU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU0_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.980e-45
Identity = 82/168 (48.81%), Postives = 109/168 (64.88%), Query Frame = 1 
Query:    7 VNAPWSTLRPNPRDQRERAAADANYGVGDGPHSTKDGETEIHWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRVIRDDGIGKFPTTALKTREFMRLTALSGTIFTGFFCTYQGVKYGAKLARGEDDFWNVLIASAGSFAPMLPFPAMRSRYPYAAILVAMDTLNNHIL 510
            VN PW  LR NPR +R+R + +A       P S  D      +D+    +++ FG   GGVTGI FG MD HRVI   G  +F T A K +E  R+TA +GT+F G+F  YQG+KYG +  RGED F+NV +A+A S AP++PFPA+R+R PY A LVA+DTLN+H+L
Sbjct:    6 VNVPWRELRHNPRTERDRLS-EAELSDESKPES--DATFMDRFDMGMMNRKLIFGVACGGVTGIMFGLMDSHRVISKTG--QFFTLAAKVKETTRMTAFTGTVFGGYFAAYQGIKYGIQAYRGEDTFFNVFMATAISIAPVVPFPALRARLPYMAFLVAIDTLNSHVL 168
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig926.21418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWV5_9PHAE6.460e-10186.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQU0_9STRA2.980e-4548.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig926contigM-pyrifera_M_contig926:1801..4836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue3.7e-16
Seed eggNOG ortholog65071.PYU1_T013902
Hectar predicted targeting categoryother localisation
EggNOG free text desc.function. Source PGD
EggNOG OGs1MGYM@121069,2DR8T@1,2S6DK@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003320.1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons4
Model size513
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig926.21418.1prot_M-pyrifera_M_contig926.21418.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig926 1801..4836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.951738-CDS-M-pyrifera_M_contig926:1800..19771622816838.951738-CDS-M-pyrifera_M_contig926:1800..1977Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig926 1801..1977 +
1692278208.6484137-CDS-M-pyrifera_M_contig926:1800..19771692278208.6484137-CDS-M-pyrifera_M_contig926:1800..1977Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig926 1801..1977 +
1622816838.96422-CDS-M-pyrifera_M_contig926:3107..31411622816838.96422-CDS-M-pyrifera_M_contig926:3107..3141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig926 3108..3141 +
1692278208.6670005-CDS-M-pyrifera_M_contig926:3107..31411692278208.6670005-CDS-M-pyrifera_M_contig926:3107..3141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig926 3108..3141 +
1622816838.9749963-CDS-M-pyrifera_M_contig926:3727..38391622816838.9749963-CDS-M-pyrifera_M_contig926:3727..3839Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig926 3728..3839 +
1692278208.6777236-CDS-M-pyrifera_M_contig926:3727..38391692278208.6777236-CDS-M-pyrifera_M_contig926:3727..3839Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig926 3728..3839 +
1622816838.9886882-CDS-M-pyrifera_M_contig926:4646..48361622816838.9886882-CDS-M-pyrifera_M_contig926:4646..4836Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig926 4647..4836 +
1692278208.6883574-CDS-M-pyrifera_M_contig926:4646..48361692278208.6883574-CDS-M-pyrifera_M_contig926:4646..4836Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig926 4647..4836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig926.21418.1

>prot_M-pyrifera_M_contig926.21418.1 ID=prot_M-pyrifera_M_contig926.21418.1|Name=mRNA_M-pyrifera_M_contig926.21418.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
MTVNAPWSTLRPNPRDQRERAAADANYGVGDGPHSTKDGETEIHWDVTDF
GKRMAFGGIVGGVTGITFGAMDGHRVIRDDGIGKFPTTALKTREFMRLTA
LSGTIFTGFFCTYQGVKYGAKLARGEDDFWNVLIASAGSFAPMLPFPAMR
SRYPYAAILVAMDTLNNHIL*
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mRNA from alignment at M-pyrifera_M_contig926:1801..4836+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig926.21418.1 ID=mRNA_M-pyrifera_M_contig926.21418.1|Name=mRNA_M-pyrifera_M_contig926.21418.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3036bp|location=Sequence derived from alignment at M-pyrifera_M_contig926:1801..4836+ (Macrocystis pyrifera P11B4 male)
ATGACAGTGAATGCTCCATGGTCGACGCTTCGACCAAACCCTCGAGATCA
GCGCGAGAGAGCTGCCGCAGATGCGAATTATGGGGTTGGAGATGGACCGC
ACTCGACGAAGGATGGCGAAACGGAAATCCATTGGGACGTGACTGACTTC
GGCAAGCGCATGGCCTTCGGAGGTATCGTGAGTACGATACTTCTGTACTT
CTGTATCTATACTTCTTCTCCACCAAGTTCTTTTATTACGCTACCCGCTG
TGGCAGCTGGGGATACAACGTGGTTCGCAGTTGCTCCAGTCGTGCTCATT
TATACAACAGGTCGAACGAGTGTAAGCGCTGTGCGGCAGTCTCCGCCTCC
AAACGAATTGATACCTCCGACGTTGTTTGTGTCGTGTGTGAAACATCGTC
GTGTAGACTGCAGCAACACACCAGCAGTACATGGCAACGACAGCAGCAGC
AGCAGCAGCAGCAGCAGCCCATGAGTACAGAGTAGTACGGGTACGTATGG
TATAGCGTCGATGCAATGTCAACTGCAGCAGTAGCAGCATGATAAGTTGG
TATGATTAGAGAAAGGAGGCTATTCCGTTGGCCCGCGCAAGAGACGCGCA
CTATTAGGCACCAGGTACCTGCCAGTGCTTTTGTTGTCATTGTTGTTGCT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGCTTCCATTAAA
TTTTTAATCGCGGAGTCCGTGGTCACACAAAGGTGCTGGAGCCCGAGGAA
GGTCCGAAAAAACAAAAAAGTATATACCCACGAGCAGTGGTTACGATACT
GCTGTTGTAATCGTCCTGGAGGGCTTGATTCGGCCACCAGAAGAACGCCG
CAGAGGGAACATTCGCTGCTGTCATACGGGCACAGGGGGCAGAATAATCG
CAGTCCAGGGCCGACAGAAAGCCTAGCGAAGAGTCTATTATGATTCTGGA
CATGTTCAGGGGTAGAAACCGGGATCAGGAATCGAGTTGATGGTTGAAGG
AGATAAATGTGGGAACTCGCCGTAGACTCCCTTTACTCATGGAGCGAAGC
ACTCCGTCCTGGATCCGGACTACAGCATTAATAGTTGACCCCACGCAGAT
GTGGAACACACTCGACCGGGGGATGCATGCATACAGGGTGGTGTACACGC
ATGAAATGTTACATGCCCTGCGTACGTGGAACACCTTGCCTCTCTGGAAA
ATATGGTGGTCTTGTGCTCTGACATCACGACGGCACGCTCATCCTAGACG
CCCGTCTGTTCTCTGTTGGCCCCCTTGTGCCGCACCACTGGCGTACAACC
TAAACAGGTCGGGGGCGTCACCGGCATCACGTTCGGAGCAAGTGAGTCGA
TGCTCGTTTTTGGTTTGGGTGCTGCTCTTATTTGTTTTGTTGGTACGTAG
GACGGCCGTAGGTTTCGTCAAGTCCGCGGCTAGGGTCAATTGGAACATTA
TCCACAAGCAAGGACAACGGATACTACCGTCTTGGGATCCCGTTCCAGGT
TCCAGGGTTCCAGGACCAGTCCATCGTAGTGCTGCTGTTGTGCTTTCTAT
AGCTATGTGACGACCGATCCCCGCGTGATTACGATAGCGCTCTGAAGAGC
TATGAGTGTGCATGCCGCGCCAAGCTGTGGTGGATCTCTGTGGCTTCGTT
TGGCACAAAAACAGCTTTACGGTGTGGTAGAAGACGAAGATCTACGAGTA
TTGCATGTCACCATCCGACGTCCAGATTGCTCTATTATTGGTATGCACTG
CACATGCATGTCAACAATGACGTGAAAAAAGCGAAACTGGCCGCTCAAAA
GCGCGCGAAATCTTGCACCACTGGAATATTTGCGGTGCTCCAGGCGCAAA
CGCATGGTACCAGAAACCCATTCCTGCCGACGCATATGTGTGCTCGCATC
ATTAATTTGTACCTATTCGTTTGGCAGTGGACGGCCACAGAGTTATTCGT
GACGACGGAATAGGCAAGTTTCCCACCACAGCCCTCAAGACCAGGGAATT
CATGAGGCTCACGGCGCTCTCTGGCACCATTTTTACAGGGTAAGGACCGC
TGCCCTCTAGAATATGAAGTACAGAGGGGTGCTTGGAAAATCGAAGCAGA
TTGCGAAATATCATTTGTGCCGTTTTGCAGTAACGTCGTTGCACCTGCGG
TAGAGGTTACAAGGTGGAAGTGGGAGGGGTGCTGGGAAAATCGAAGCAGC
TTGTGAAACATCATTTGTGTCGTTTAGCAGTATCGTTGTTGCACTTGCGA
TAGAGGCTGCAAGTTGAAAATTGATACACACCTTGGCACTCCGTTGGAAA
ACTCTCCTTTTGAGTTTGCTGTTATCACGTTAAATGGCTGAGGCATGGCA
CAATTTAATCTGCCGCCTTCACGTCTCCACAAGAGGCCCAGCTACAGCAA
AACGTGAATGTAGGCAGACGAGACAGGTACTACAACGTGGTATAGACGTT
CTTCCGCTCACCAACACCAAGTGCGGTGAAACCAACAATTTTATTGGAGA
AAAAGATTTGTGCGCTGTTCTGTTCTGTCCTTGTCCCCATCCCTTGCTAC
TGGGAGGAGGAGCGTCAACGGTTTCTATCAAAAGCAGCTTGGGGTCGTCC
AAAACCGGTGCTTGGGAATATCACGCCGTGCAAGCCTGCGCCTTGAGCCG
CGCAAACGAGATGCTATCACAAGCTGGCTGGTCTTTCGGTCTGTTGCGTT
TTTTATTCAGGGCAGCGAACGTCCCAACATATCAAACATGGAATTATCTT
GGGCAACACCTTCGCGTGCTCCGTTGTCCCGCCGTCTTAGGCCGCCGCCA
CCACGGCTTTGACGTACGCACCGAAATCCTCCCGCTATTTTCGCAGTTTC
TTTTGCACGTACCAGGGGGTCAAGTACGGGGCGAAGCTGGCACGAGGAGA
GGACGACTTCTGGAACGTACTCATCGCGTCGGCGGGATCTTTCGCGCCCA
TGCTGCCATTCCCGGCGATGCGGTCACGGTACCCGTACGCCGCGATTCTC
GTTGCGATGGACACCCTTAACAACCACATTTTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig926:1801..4836+

>mRNA_M-pyrifera_M_contig926.21418.1 ID=mRNA_M-pyrifera_M_contig926.21418.1|Name=mRNA_M-pyrifera_M_contig926.21418.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig926:1801..4836+ (Macrocystis pyrifera P11B4 male)
ATGACAGTGAATGCTCCATGGTCGACGCTTCGACCAAACCCTCGAGATCA
GCGCGAGAGAGCTGCCGCAGATGCGAATTATGGGGTTGGAGATGGACCGC
ACTCGACGAAGGATGGCGAAACGGAAATCCATTGGGACGTGACTGACTTC
GGCAAGCGCATGGCCTTCGGAGGTATCATGACAGTGAATGCTCCATGGTC
GACGCTTCGACCAAACCCTCGAGATCAGCGCGAGAGAGCTGCCGCAGATG
CGAATTATGGGGTTGGAGATGGACCGCACTCGACGAAGGATGGCGAAACG
GAAATCCATTGGGACGTGACTGACTTCGGCAAGCGCATGGCCTTCGGAGG
TATCGTCGGGGGCGTCACCGGCATCACGTTCGGAGCAAGTCGGGGGCGTC
ACCGGCATCACGTTCGGAGCAATGGACGGCCACAGAGTTATTCGTGACGA
CGGAATAGGCAAGTTTCCCACCACAGCCCTCAAGACCAGGGAATTCATGA
GGCTCACGGCGCTCTCTGGCACCATTTTTACAGGTGGACGGCCACAGAGT
TATTCGTGACGACGGAATAGGCAAGTTTCCCACCACAGCCCTCAAGACCA
GGGAATTCATGAGGCTCACGGCGCTCTCTGGCACCATTTTTACAGGTTTC
TTTTGCACGTACCAGGGGGTCAAGTACGGGGCGAAGCTGGCACGAGGAGA
GGACGACTTCTGGAACGTACTCATCGCGTCGGCGGGATCTTTCGCGCCCA
TGCTGCCATTCCCGGCGATGCGGTCACGGTACCCGTACGCCGCGATTCTC
GTTGCGATGGACACCCTTAACAACCACATTTTGTAGTTTCTTTTGCACGT
ACCAGGGGGTCAAGTACGGGGCGAAGCTGGCACGAGGAGAGGACGACTTC
TGGAACGTACTCATCGCGTCGGCGGGATCTTTCGCGCCCATGCTGCCATT
CCCGGCGATGCGGTCACGGTACCCGTACGCCGCGATTCTCGTTGCGATGG
ACACCCTTAACAACCACATTTTGTAG
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