mRNA_M-pyrifera_M_contig9259.21416.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9259.21416.1
Unique NamemRNA_M-pyrifera_M_contig9259.21416.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9259.21416.1 vs. uniprot
Match: D7G443_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G443_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 3.260e-59
Identity = 97/153 (63.40%), Postives = 122/153 (79.74%), Query Frame = 1 
Query:  250 VVFAWSFLGFETHFSIRGRRRRFLSPFSSLGLVAFLYLLLFVLSVGIWIFGTWAVAKDVEAGSCSRTVPVLYNYSAVLVIIYWVGVMFGGVELVATMCGKRIKSGAQASLAKTKQYAEDRDRRDEQAAERQVVGRKFDERDEEGNGTIEREQA 708
            +VFAWSFLGFETHFSIRGR+RRFL PFSSL  VA LYLLLF +S+ IWIFGTWA+ KD    SC+  VP+LY++   LV +YWVGV+FG V L+  + GK+I+SGAQA++ K KQ+A++RD+     AE+Q+V RKFD RDEEGNGTI+R+QA
Sbjct:    1 MVFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFGTWAIVKDRVGNSCANEVPLLYSFCVALVAVYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQFAQNRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQA 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9259.21416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G443_ECTSI3.260e-5963.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9259contigM-pyrifera_M_contig9259:2516..8697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-25_000620.1
Exons4
Model size717
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9259.21416.1prot_M-pyrifera_M_contig9259.21416.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9259 2516..8697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.8165884-CDS-M-pyrifera_M_contig9259:2515..26711622816838.8165884-CDS-M-pyrifera_M_contig9259:2515..2671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9259 2516..2671 +
1692278208.5747678-CDS-M-pyrifera_M_contig9259:2515..26711692278208.5747678-CDS-M-pyrifera_M_contig9259:2515..2671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9259 2516..2671 +
1622816838.82923-CDS-M-pyrifera_M_contig9259:4059..42921622816838.82923-CDS-M-pyrifera_M_contig9259:4059..4292Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9259 4060..4292 +
1692278208.5915122-CDS-M-pyrifera_M_contig9259:4059..42921692278208.5915122-CDS-M-pyrifera_M_contig9259:4059..4292Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9259 4060..4292 +
1622816838.8414478-CDS-M-pyrifera_M_contig9259:6717..69131622816838.8414478-CDS-M-pyrifera_M_contig9259:6717..6913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9259 6718..6913 +
1692278208.603464-CDS-M-pyrifera_M_contig9259:6717..69131692278208.603464-CDS-M-pyrifera_M_contig9259:6717..6913Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9259 6718..6913 +
1622816838.8529472-CDS-M-pyrifera_M_contig9259:8565..86971622816838.8529472-CDS-M-pyrifera_M_contig9259:8565..8697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9259 8566..8697 +
1692278208.6120796-CDS-M-pyrifera_M_contig9259:8565..86971692278208.6120796-CDS-M-pyrifera_M_contig9259:8565..8697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9259 8566..8697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9259.21416.1

>prot_M-pyrifera_M_contig9259.21416.1 ID=prot_M-pyrifera_M_contig9259.21416.1|Name=mRNA_M-pyrifera_M_contig9259.21416.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=239bp
MDGIDNEPEAVAAALAASSAAQMKWASFVLLGPLVPSLLAITNIVIGGAV
VKADVIDPDAAFSCGYRADIFVRATIVNSYLLLVVFAWSFLGFETHFSIR
GRRRRFLSPFSSLGLVAFLYLLLFVLSVGIWIFGTWAVAKDVEAGSCSRT
VPVLYNYSAVLVIIYWVGVMFGGVELVATMCGKRIKSGAQASLAKTKQYA
EDRDRRDEQAAERQVVGRKFDERDEEGNGTIEREQANI*
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mRNA from alignment at M-pyrifera_M_contig9259:2516..8697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9259.21416.1 ID=mRNA_M-pyrifera_M_contig9259.21416.1|Name=mRNA_M-pyrifera_M_contig9259.21416.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6182bp|location=Sequence derived from alignment at M-pyrifera_M_contig9259:2516..8697+ (Macrocystis pyrifera P11B4 male)
ATGGATGGTATCGACAACGAACCAGAGGCAGTCGCAGCCGCCCTTGCGGC
GAGTTCAGCCGCCCAGATGAAATGGGCCTCTTTCGTGCTCTTGGGGCCGC
TGGTACCGAGCTTGCTCGCCATCACGAACATCGTAATCGGCGGGGCCGTC
GTAAAGGTAAGCCCCAGGGGGAAACTCTGCACACGTCTGACACATCACGA
CCTACTGCCTTACTTGGTCGTCTACTTATAGATCCTCTAGGCTGCAGATA
TGAGACGCTGTGCAGGATCGGCACATCACACTATACCTGGTGCACAGTGC
TGCTGTACCACTGTAGTACAGATCCAACCCACGAATCAAGTGGTATTTAC
ACACAGTAGGTAATGCAGATAATACGGCTTCCACCAGGTAACATGAGCTA
AACCGTGCAGGTTAGGCATCCATCTCCCCTTGGGGAATATATATACTGCT
GTATATCATGAAGTGGGAATCGATGGTGGTCTGCCCGAGGTGCGAAGCCT
TAACCCTGAGAAAAGTAGGCGTCGAAGACGTATTGATACCCTGTTTGTCA
CCCAATGACAACTACCACTGTGCACCGTAAGCCTTTTTCTTGCCGTCATA
CTCCATAGACGTAACCTTATGACGCCGATCACACTTACAGTCGACTACGC
ACAGACTCAACAGAAATAATTAGGAAACGCCACGAATGAGGAACCATCGT
GCGTGTCGTTATATTCGCGCTTCGCAGTACGGTATCATGGAGCGATTTTC
GGAGCAAAGGCTCGCGAAACGCTCGGTCGCACCGAAGGTATTACCGTCAC
ACACACACACATCCATGCAATGTATGCCGATCCTCGCTGGCGATGTTCAC
GGGCTCCTTCGTACGGTTGAGCTCCCAAAGTATATGGTGCCCGCTATGTG
CAACTGCATCACTTGGTGCAGGATGTGTATCGTCAGTTTTGACCTTGCAC
GTGGACCCAGACCAACCCAACCCCAGCCTAACCCTAGCCCTAACCCTAAC
ACAAACCCGAACCCCAACCCCAACCCTTCGGGGGGGCTCGAGGTCGGCGG
CGACAGTCACGCGGCTTCGCCGCGTGTTTTGGTGGCGTTTTTCCTAAAAA
ACACGCCGGGCGGCCGAAAAACTCGCCTTGACCAACAAGACCCGAGTCCT
GCACAGAGTTTTGTGCTGGATGCAGCTGCCCACTCAGTAGATCGAGTTAA
CGTATACGGCTTCCGATATGTGTAGGACTGTGTGTCGTCAATTTCAACCT
TGCACGTTGATCCATACCAACCCGACCCCAGCCCTCACCCCAACCCTAAC
CCTAACCTTAATCCTAACCCCAACCCTTTTGGGGGGCTCGAGGTCCGCAG
GGGCAGTTGTGCGGCTCCGCGCGCCGCCTGTTTCGGTGGCGTTTTAAAAA
GAAGCATCAGGGCGGCGGGCTGGAAGACAGTCTTGACCAATATGGCCCGT
ATCCTGCCCAAAGGTTTGTGTCGTCCTGCAGACGGGACGAGTCAATATGT
ACCGCCTCCCTCGAACGCTTGAACTCTCAACACATATCGTACAGGCCGAC
GTGATCGACCCGGACGCCGCCTTCTCCTGCGGATACCGAGCGGATATTTT
CGTGAGGGCCACGATCGTGAACAGCTACCTTCTCCTCGTGGTCTTCGCTT
GGTCGTTCCTGGGGTTCGAAACGCACTTTTCCATCAGGGGCCGGCGAAGA
CGCTTCCTGAGTCCCTTCTCTAGCCTCGGACTCGTGGCCTTCTTGTACCT
TCTGTTGTTTGTTTTGAGTGTCGGCATGTGAGTACGAGTACTGCTGTAGA
CGTCCCGGCTTGCACACACTTTCTTCTTCTGTTTGTTTTAGAGTGTCGCG
CAATGTGAGCAGAGCGAGAGCGATGGTCACCCACCGGCTTCTGTCCCGAG
CGGGGTCTTTGTTTGTTTTAAGAATGAGGCACTACAGTAGTAGTGGGCTC
TCGCTATTACGGAGGACCATAGTAAATAGGACCTACGTTACAGAAAAAAA
ACTATATATTTACCTATTTTACTAACCATATTTGGTCCTGTTTACTATGG
TACCCCGTAGTAGATGCTTGCGCAGCAGGACACTTGTACGTAGCTGTCGT
CAACTTGCGTGCGTTGACAGATTTTGAGAATTTGGAGAATCGTCCAAAAA
AACAAACATCGGTCAGCAGTCGTAGAACCTCGGTCGTAGAACCGGCTTCA
GTCAGTCAGCTCGAAAGGCGTCCCGAACTTTTGGCGCGGTGTAAACTAGA
TATCCGTAAGAGTTAGCAAGGAAAACGGACCCGACCCGACTCGTGAGACT
TTGAAAACCCCTTCTGACCCGACCCGTGAGATTGAAAAAACAATCCTGAC
CCAACCCGTGGGTAAGATCATGACCACTGTAGATGATGGAATGTGATGAG
TTCACACTTAGATGACTGACCGATGACGGACGGTCTTCAGATGGCTACCA
CATAGTCGTTGTGTGATGAGATCAAGCAGCACTGATGGCGATTTAAACGA
TGATAATAGTGGATACCTGGTATGTTGAAAGGGCGCCCGTTGGCCCAAAA
AAAGCTTATGGTACGATGAACCGCAGAGAGTTCGGATGCGGATGTGAGGA
ATACAAACAAAAGGGCTACTCCTGCGAAGCTTCTCCTACTTACGGCTTAC
GGCAATATCCGTCTCGTACGGTAGCTTACACTCATACGCACGTTACGCTA
ATCACACGCACAGTAACCTACATTTATTGTACGTGCGTTACCTTAGCCCA
AAAGCTACTCGGTGGAATGTCTTTCCAAAGGATCGCTTCCCACCTACATT
AAACGACAAGCGGTCAGTATTCTGCGTCCCGAACCTACACTGATATCTTC
CGAAGTACGACGGCCTACCCTGCATACATACCCAACGAACACTGAGATCT
TCCGAAGGACGACAGCAAGGTCAGAGGAATGTGTACCTACCGATGACTAT
TACGGGGGTCCATAGTTAACAGGACCTATGGTATACATAAAAACCTATAT
GTTTACCTATTTTTACTAACAAAATTTGGTCCCATTAACTATGGACCCCC
GTAATAGTGGATCTCTCGAAGATCCTATCATTTGGCAGAAAAGCGCTGCA
TTTTTAGATCGTAGTTGACCAGCCTAGGCTACCGGGATGGTAGGTGGATC
CGAAGTGCAACGAGCGGAAATGTACGACAGGCGCGCAGCATACTGATCCT
TGTGCCGCTCGCTCTCTTCCTATTGCAAGTAACGGTCCTTCCGTAGTGCC
TTTTTTGTTTTTTGTTTTTTCTTGTCTTCCCAACAAATTGTTTTCTCAGC
CCATTGTTTTTCTCTCTCCCTCCTAGTCGTAGCTCAAATCCGGGGTCACA
TAGCAGGATCGCCCCCCCTCCCCCCTCCCCACTACGTACGATTCGTTCCT
TGCATTTTTCTCGCGAGAAAGGCTTCAGCCCTTTCTTCTCTCGTCGACTC
GCGTCGGTTGAATAGTGCGGGTTGCCCTCAATAGTGCCTGTGGAATCGCT
GGGCACAGATGGGATTCACAAGTCGGTTTGGTAGTTAGTGCCCGGAGTAG
TGCCGATTGCCGTGCCATATTGCCGGTGCTGTTGGCTGGCGCATACCGGG
ACTACAGGAATACCACTACCTTAAATACGAGCGATGTTGTTGCATTTCTC
GTTTTTAGAGGCGTACACTGCTTGCTGTACCTAACATTCTTTGGCGGGGG
GGTGCGCGGGGGGGCGGGGGGGGGGGGTAGACCACTTTAGTAGAGGGCTG
TGTAGACCTTAGCCCGGCTTCAACGAACCGGTTAAAAAAATGCTGGACTT
AAAACACTAACATCGACCTTAAACCCGGCCGTCTGGGAAAATTCTCGGAG
CGAACACGCGTTGAGAAGTTCTCTAGCGTGGACTGTGAACTGTTTCGTCG
GAGCTGAGCCAAAGATGCACACGCTGCTGACTCGGTAGATATTCCGTTTT
TTGTTTCAAATTATTTATTAAAAAACTGAAACATGCCCGGGTACGTCACC
TGTGAGCTCATAACTTTATGTGGGACATTTCGAGGACTTTCATTTTTCTG
CACTCCAGCATCTGTCTACCGCTCGAGTCATCTTAGCCTCCACAATCACT
CCTACAAGGGGGATGACCCCCAAAATATCCCCGGAGCCAAGGTATCACCC
GCCGCGTTTGTTCCAGTTATTTCGCTCCTCCTGTGCTGTTTTTCCTGGGC
AGATGGATATTCGGAACTTGGGCGGTGGCAAAAGACGTCGAAGCAGGATC
GTGCTCCAGAACGGTCCCCGTGCTGTACAACTATTCTGCGGTGTTGGTGA
TTATTTACTGGGTAGGCGTTATGTTCGGGGGAGTGGAGCTGGTGGCGACG
ATGTGTGGGAAGCGGATCAAGAGCGGAGCACAGGCTTCCCTCGCGAAGGT
GCGGGACAGCCGCCGCTGCTATGGTACAATGATGCGTGCGTGCATACTAC
AGCAGTGCCTAGCAGCCCTTGTCGGGGTTTTTTTTTCCCCGGAACGCGCG
TCTCAAGCACAATACAGAATGCCGTAAAGAGCGCGTTGAGTGTGTAGAGG
GGTGCGATCGTTGTTCAGCGCTCGATTTATCAATAAGGGGGGAAAGGTTG
CCAACAGCGAACAAAGGAGGCGTTTTCGGAAAGATCTGTTTTAGAGCCTT
CCGAAAATATCATGTTCGACGTTAGCATCATTACCGTTACAAAAAAAGGG
AACGCAGAAAAACGATCGCACTCCTGTACGAACCCGACGCCCTCCTTGCG
GCAATCCTCTGATAGTGAAACTGAGTATTGTATTTTGGGAATTGCAAATC
TGTCTGTCTGTCCGCTCTCTCTTGGCACTCTCACCAACTCCAACTGCGGC
TTCACAAAACAAAAAAGACAAGCGAACTGAGAACAGCGCTCGAACGCCTT
TCATCGAGGGCAATAACAAATGCTGGCATATTCTTTGGCATTTCTGCTTG
CCATCCTTAACAATGTGCAGCATACGCTTCAACGTCGTTCACTTGCTAAT
ACCCCCAAAGAAATATAATGGAATAAAAGGAAACGAAAAAGAGAAACCTA
TTGGACGACAGTAGACCGTCGGATTACGGTAGCCTATCAGAATACAGTTG
CTTAATGGGCCGCAGTATTACTACTGAACTACGGTATACTATTGGACTAC
AGTAGTCTATTGGACTGCATTAGCATAATAGACTACAGTAGCCTATTAGA
ATACAGTAGCCTGTTGGACTTCAGTAGCTTTGACGTCGCTCGCTCATGAA
CAAACCCAGAAAGAAGAAAGATATCCAAGGGACTCCAAAAAAATAAACAA
AAATACGCAACATAATTCCGTGACTCCGCATTAATAGCTGATTGCAGTGA
GATACGTGTTCGTTCAATACAGTCGCCGAAACGTAGATCTTAGGCAGAAT
ATTGGAACATTGATCTCAGGAGAGAACACCGGAACCTTTACATAGGGAGG
AACGGGGCAGGGAGTGAAATGGGGGAAGGGCAGAAGGAGGGGAGGGGGTG
TACGCGATATCATGCATGGCCGTAGTCGCATCACCTGGCGGGAGGGGACG
GGGGGAAGGGGGGAGGGGAGAAGAAGGGAGCGGGGAGGTGAGGCGGGAGG
GGAAGTGGGGGAGGGGCGGGAGGGGGTGAAGGGGACTGAAGGGGGGGTTG
GAGGTGGGGACGCTATAGACCTTAATGTCTGCCCAACGTGTACCGCTACA
GTAGTCTTGCTACACATCGATGAACGACTGTACCGCCGTCGCTGATCTTT
CTTGCGAATCGATACGCAACCACCTTTTATCGTTTTCACGTACTATAGTG
TTGTATCCTACGTTCCCTTCGACAGTGTCCAGCTCAGATAAATTTCGGCC
CCTCAGGAGATAATGGGACGAAGAACACGCGAACTAAAATTCAGCCGCGA
GAAAACTACATTTGAACGTCAACGAAAAACGTGCACGCAATCTGAAAAGG
CGAGTGTCTACTACTACTGCTGTGTCTCCCCCCTCAACTAATATCGCTGC
GCATCCCATCAATCAACAATTTTGGTTGCTTCTTTTTCGGTGAAGAACAG
ACAAAACAATACGCGGAGGACAGAGACAGGAGAGACGAGCAAGCGGCAGA
GCGGCAGGTGGTAGGGAGGAAGTTTGACGAGCGCGACGAGGAGGGCAATG
GGACCATCGAAAGGGAGCAGGCAAATATTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9259:2516..8697+

>mRNA_M-pyrifera_M_contig9259.21416.1 ID=mRNA_M-pyrifera_M_contig9259.21416.1|Name=mRNA_M-pyrifera_M_contig9259.21416.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1434bp|location=Sequence derived from alignment at M-pyrifera_M_contig9259:2516..8697+ (Macrocystis pyrifera P11B4 male)
ATGGATGGTATCGACAACGAACCAGAGGCAGTCGCAGCCGCCCTTGCGGC
GAGTTCAGCCGCCCAGATGAAATGGGCCTCTTTCGTGCTCTTGGGGCCGC
TGGTACCGAGCTTGCTCGCCATCACGAACATCGTAATCGGCGGGGCCGTC
GTAAAGATGGATGGTATCGACAACGAACCAGAGGCAGTCGCAGCCGCCCT
TGCGGCGAGTTCAGCCGCCCAGATGAAATGGGCCTCTTTCGTGCTCTTGG
GGCCGCTGGTACCGAGCTTGCTCGCCATCACGAACATCGTAATCGGCGGG
GCCGTCGTAAAGGCCGACGTGATCGACCCGGACGCCGCCTTCTCCTGCGG
ATACCGAGCGGATATTTTCGTGAGGGCCACGATCGTGAACAGCTACCTTC
TCCTCGTGGTCTTCGCTTGGTCGTTCCTGGGGTTCGAAACGCACTTTTCC
ATCAGGGGCCGGCGAAGACGCTTCCTGAGTCCCTTCTCTAGCCTCGGACT
CGTGGCCTTCTTGTACCTTCTGTTGTTTGTTTTGAGTGTCGGCATGCCGA
CGTGATCGACCCGGACGCCGCCTTCTCCTGCGGATACCGAGCGGATATTT
TCGTGAGGGCCACGATCGTGAACAGCTACCTTCTCCTCGTGGTCTTCGCT
TGGTCGTTCCTGGGGTTCGAAACGCACTTTTCCATCAGGGGCCGGCGAAG
ACGCTTCCTGAGTCCCTTCTCTAGCCTCGGACTCGTGGCCTTCTTGTACC
TTCTGTTGTTTGTTTTGAGTGTCGGCATATGGATATTCGGAACTTGGGCG
GTGGCAAAAGACGTCGAAGCAGGATCGTGCTCCAGAACGGTCCCCGTGCT
GTACAACTATTCTGCGGTGTTGGTGATTATTTACTGGGTAGGCGTTATGT
TCGGGGGAGTGGAGCTGGTGGCGACGATGTGTGGGAAGCGGATCAAGAGC
GGAGCACAGGCTTCCCTCGCGAAGATGGATATTCGGAACTTGGGCGGTGG
CAAAAGACGTCGAAGCAGGATCGTGCTCCAGAACGGTCCCCGTGCTGTAC
AACTATTCTGCGGTGTTGGTGATTATTTACTGGGTAGGCGTTATGTTCGG
GGGAGTGGAGCTGGTGGCGACGATGTGTGGGAAGCGGATCAAGAGCGGAG
CACAGGCTTCCCTCGCGAAGACAAAACAATACGCGGAGGACAGAGACAGG
AGAGACGAGCAAGCGGCAGAGCGGCAGGTGGTAGGGAGGAAGTTTGACGA
GCGCGACGAGGAGGGCAATGGGACCATCGAAAGGGAGCAGGCAAATATTT
AAACAAAACAATACGCGGAGGACAGAGACAGGAGAGACGAGCAAGCGGCA
GAGCGGCAGGTGGTAGGGAGGAAGTTTGACGAGCGCGACGAGGAGGGCAA
TGGGACCATCGAAAGGGAGCAGGCAAATATTTAA
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