mRNA_M-pyrifera_M_contig9258.21414.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9258.21414.1
Unique NamemRNA_M-pyrifera_M_contig9258.21414.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9258.21414.1 vs. uniprot
Match: D8LH74_ECTSI (Mitochondrial import inner membrane translocase subunit TIM17 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH74_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 7.920e-57
Identity = 133/157 (84.71%), Postives = 144/157 (91.72%), Query Frame = 1 
Query:    4 PVAAAVAPSPSHLATGRTASGVLENCIXXXXXXXXXXXXXXXXXXXXXXXXXATFGKVPDVGLLKSVQTKAVQMGGDWGKLTAAFSGFTSASTVIRGRNDKWDQVVGACGAGAFLNRAKGPSGMAQGAATYGLFSLIFAVQS-KEDALDVVDIPVDA 471
            PVAAAVA S SHL TGRTASGV+EN  XXXXXXXXXXXXXXXXXXXXXXXXX +FG+VPDVG LKSVQTKAV+MGG+WG+L+AAF+GFTS STVIRGRNDKWDQV+GACGAGAFLNRAKGP GMAQGAATYGLFSLIFA  S ++D LDVVDIPVDA
Sbjct:   57 PVAAAVA-STSHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRVPDVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFAFPSGQDDELDVVDIPVDA 212
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BLAST of mRNA_M-pyrifera_M_contig9258.21414.1 vs. uniprot
Match: A0A7S1T4X3_9RHOD (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4X3_9RHOD)

HSP 1 Score: 61.2 bits (147), Expect = 1.540e-7
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:  235 WGKLTAAFSGFTSASTVIRGRNDKWDQVVGACGAGAFLNRAKGPSGMAQGAATYGLFSLIFAVQ----SKEDALDV 450
            WG ++A +SG  + +  IRG++D+++ + GACG+GA      GP    QG A++ LF  +F V     SKE+A+D+
Sbjct:   93 WGGISAIYSGLQATARAIRGKDDRYNALAGACGSGAVFALGSGPRAALQGCASFALFGYVFDVMFYPNSKEEAVDM 168
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BLAST of mRNA_M-pyrifera_M_contig9258.21414.1 vs. uniprot
Match: A0A1X6P919_PORUM (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P919_PORUM)

HSP 1 Score: 57.4 bits (137), Expect = 5.070e-6
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:  235 WGKLTAAFSGFTSASTVIRGRNDKWDQVVGACGAGAFLNRAKG--PSGMAQGAATYGLFSLI 414
            WG ++A +SG  +A+ V R +ND+W+ V+GACG+GA  + A G  P    QG  ++ LFS +
Sbjct:  124 WGGVSAVYSGLQTAAKVARAKNDRWNNVIGACGSGAAFSCASGGGPRAAVQGCVSFALFSYV 185
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BLAST of mRNA_M-pyrifera_M_contig9258.21414.1 vs. uniprot
Match: L1JQE8_GUITC (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQE8_GUITC)

HSP 1 Score: 55.8 bits (133), Expect = 1.000e-5
Identity = 29/86 (33.72%), Postives = 42/86 (48.84%), Query Frame = 1 
Query:  196 KSVQTKAVQMGGDWGKLTAAFSGFTSASTVIRGRNDKWDQVVGACGAGAFLNRAKGPSGMAQGAATYGLFSLIFA--VQSKEDALD 447
            K   +     G  WG ++AAF G    +  IRG+ DKW+ ++GAC AG   N  KG   MA G   + + S I    +  K+D  +
Sbjct:   62 KGAMSNGFSTGTAWGSMSAAFCGVEVLAREIRGKTDKWNNMMGACSAGVVGNCGKGVGAMASGCVNFAVMSYIIDLFIDKKQDPFE 147
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BLAST of mRNA_M-pyrifera_M_contig9258.21414.1 vs. uniprot
Match: A0A5J4YNE8_PORPP (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNE8_PORPP)

HSP 1 Score: 55.1 bits (131), Expect = 2.790e-5
Identity = 27/74 (36.49%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  193 LKSVQTKAVQMGGDWGKLTAAFSGFTSASTVIRGRNDKWDQVVGACGAGAFLNRAKGPSGMAQGAATYGLFSLI 414
            LK    +A   G  WG + A ++G  +A+  IRG +D W+ V+GACG+G +L+  +G   MAQG  ++  F+ +
Sbjct:  101 LKLALGEARSSGISWGGIGALYAGIQTAAKNIRGVDDTWNTVLGACGSGVYLSWGQGGRSMAQGCVSFAAFTYV 174
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9258.21414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LH74_ECTSI7.920e-5784.71Mitochondrial import inner membrane translocase su... [more]
A0A7S1T4X3_9RHOD1.540e-738.16Mitochondrial import inner membrane translocase su... [more]
A0A1X6P919_PORUM5.070e-641.94Mitochondrial import inner membrane translocase su... [more]
L1JQE8_GUITC1.000e-533.72Mitochondrial import inner membrane translocase su... [more]
A0A5J4YNE8_PORPP2.790e-536.49Mitochondrial import inner membrane translocase su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9258contigM-pyrifera_M_contig9258:1175..4396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D8LH74
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tim17/Tim22/Tim23/Pmp24 family
EggNOG OGs2E7AM@1,2SDXE@2759
Ec32 ortholog descriptionTim22-like protein
Ec32 orthologEc-24_000820.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1090
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9258.21414.1prot_M-pyrifera_M_contig9258.21414.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9258 3150..3795 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.6780777-UTR-M-pyrifera_M_contig9258:1174..13081622816838.6780777-UTR-M-pyrifera_M_contig9258:1174..1308Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9258 1175..1308 +
1692278208.468483-UTR-M-pyrifera_M_contig9258:1174..13081692278208.468483-UTR-M-pyrifera_M_contig9258:1174..1308Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9258 1175..1308 +
1622816838.6910498-UTR-M-pyrifera_M_contig9258:3130..31491622816838.6910498-UTR-M-pyrifera_M_contig9258:3130..3149Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9258 3131..3149 +
1692278208.4809785-UTR-M-pyrifera_M_contig9258:3130..31491692278208.4809785-UTR-M-pyrifera_M_contig9258:3130..3149Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9258 3131..3149 +
1622816838.7260175-UTR-M-pyrifera_M_contig9258:3795..43961622816838.7260175-UTR-M-pyrifera_M_contig9258:3795..4396Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9258 3796..4396 +
1692278208.5198019-UTR-M-pyrifera_M_contig9258:3795..43961692278208.5198019-UTR-M-pyrifera_M_contig9258:3795..4396Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9258 3796..4396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.7023616-CDS-M-pyrifera_M_contig9258:3149..32921622816838.7023616-CDS-M-pyrifera_M_contig9258:3149..3292Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9258 3150..3292 +
1692278208.4908206-CDS-M-pyrifera_M_contig9258:3149..32921692278208.4908206-CDS-M-pyrifera_M_contig9258:3149..3292Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9258 3150..3292 +
1622816838.7154012-CDS-M-pyrifera_M_contig9258:3602..37951622816838.7154012-CDS-M-pyrifera_M_contig9258:3602..3795Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9258 3603..3795 +
1692278208.5080042-CDS-M-pyrifera_M_contig9258:3602..37951692278208.5080042-CDS-M-pyrifera_M_contig9258:3602..3795Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9258 3603..3795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9258.21414.1

>prot_M-pyrifera_M_contig9258.21414.1 ID=prot_M-pyrifera_M_contig9258.21414.1|Name=mRNA_M-pyrifera_M_contig9258.21414.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MGATFGKVPDVGLLKSVQTKAVQMGGDWGKLTAAFSGFTSASTVIRGRND
KWDQVVGACGAGAFLNRAKGPSGMAQGAATYGLFSLIFAVQSKEDALDVV
DIPVDALAKKR*
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mRNA from alignment at M-pyrifera_M_contig9258:1175..4396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9258.21414.1 ID=mRNA_M-pyrifera_M_contig9258.21414.1|Name=mRNA_M-pyrifera_M_contig9258.21414.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3222bp|location=Sequence derived from alignment at M-pyrifera_M_contig9258:1175..4396+ (Macrocystis pyrifera P11B4 male)
AGGCCTGTGGCAGCTGCAGTGGCTCCATCTCCGTCGCATCTTGCCACCGG
GAGGACCGCGTCGGGCGTGCTGGAGAATTGCATCGAGGCGTGCGTAAACA
CGTTGGGCTCGTTTGTTGGCGGGACTGTCACAGGGTGAGAGACAGCTGCT
TACTCATACGGCCTGGTAGCTCGGGAAACTGACTTGTTATGTTCTTAGAC
TACCGGTAGACTATTGTCGGCCTATTAGCAGAGGTGCCGTCTTCAAGGTC
AAACATCGCCACGCCTACGTACCCAACGTACTGTATGTAGATTGCCTTTT
TTTTCTTTGCGAAAGTGATTATTAATACCAACAGCGCTACTACTACGCAC
TCATGGACGGTGTTAACCTTGAAACCACGCCTGCAATGTCGATTGTACTC
TCCGCCTCCACAAAAGCCTCCACAACACAGCATCTTGAGGCACAATTGCG
GTACTGCTGTGTATTATACCAGGTATATACCTGATACATTAGCAAATCCT
AGACCGTTACCTTTTGGTTGCGAGTTCCTGTTCCTTTGTTTCCTTGATAG
ACAATTCACGAAGATCTGTGCAGGCGAGAGAGAGGGGTGGCATTTATCCA
GCTGGCTTATATGTTTACGCTGAGTCGCTCGAAGCGGTTGCGGGTTGTTC
TCTTATGATAGTACTGGTCACGAATGTACCGGGTACCAGGTATATTTACC
AGCATCGAAGACATACGAGAGTGCGCGAGTCGCGGTGACAAGAAAGCTTA
CTGTGTCGAAATGCTGGAGGAGGCGCTGTACGCATTCGGGCATGCTTCCG
CTATATAGCTATCTTATACGTACACTTACCATCCTTTAAGGCCGCGGAGG
ATCTTATCCACTCCCCATTCCCGGGTCTCCGGGCAACTCTGATATGTTTC
ATCGGAACAGTAAATTTAGTCGCTATTTCAACACGCCGTGTTCGAATCTT
CGGCTGGTTCGCGCCTAACGGAGAGCGGCTGTGACCCAGGAGAATTTCAT
CACAGCAGCTTGTGTTTCTCTCAAAATTGACACGCCGCTGGTTCTCAATA
GAGGCTTACACCTCGACTTGGAGGTGCTGCAGTGGTCGAATTTGGTCGAA
AAATGGGGTGACAAAGAACGAAGGGCAACTGAGCACTTGCACTTCACTTG
TGGACAGCTATTGCTCCTCACAGGAAACTACAGCCCGCGAAACTGAGAGA
TGTTCCTGACGGGATGTGTGAGGGCGTCGGAGACAGCAGTCGTAGGCAAC
CAGAACCTACTCCCGAGATTTTTCGTGTACTCGAAGAGAAGTTGCGAGCC
AGTAGCACGAAAAACTCCCAAAATCGCCAAAATGTTTCGTTTCACGCGCG
GGAGCATAGTACAATGGCTACATCATCGATGAAGAAATGGCCTTGGCCAA
AATATTGTTGTTTTCCAGGCGGATGTTATATATCTTCTTGGGTCGAATGC
AAAATTGCTGCGGAACTGAAAACTATGTTCCAATGATGAATACTTGTATT
AATAGTTTATTAGGCCAAAAAAAGGGCAAAAGGGCTGAAAAGCTCTGGAT
TCTTGTATATTTGCATCAATTTTTATGAAACTTCGAAATGCGGATCCTTC
TTGCAAATCCCTTGCGCTATTTCCACGTCGTATGTATATGTTGCTGAAAT
GCCTACGCGTGCCTACTTGATAATACATTCCTGAATGATCTTCCGTCCCC
TTCAGCAAACGCCATTCGCCCGTCGTATCATGTCGCTGCCGCCATGCTAG
TTACGCCTCCGGAAGATCGTAAGCACTGCACCAAAATGTTGCGCTCCACA
ATATTTGTCTCCTATATACGGTGAAAACGAATAGGGTCTCCCGTTTTTGT
TTGGTATCACGAAAAAAGTGGCCTTGATTTGATGACGAATCTCTTGAGTC
CTGAGCATACCGTTCACCCCCATCCTTTTTCCCCACGACCTTACCCGTGT
CCTCAGTGCTATTATAGGAGGATTCATGGGGGCAACCTTTGGCAAGGTGC
CGGACGTTGGGTTGCTCAAGAGTGTTCAAACGAAGGCAGTCCAGATGGGA
GGAGACTGGGGCAAATTGACGGCTGCCTTCTCAGGGTTCACGTCGGCGTC
CACAGTTATTAGGGGCAGGTACGCTGCAGCTTGACGTGTGATTGGCCAAC
GGTTCACCCAGCTTTTGGTTTTGCTCGCAGCCATGGGCAAAAGTTGGCCG
TATTCCAAATCCCACGTCGTGGTTCTTCGCTCTGGGGCTTGGGTGCGTCT
ATAGCAACAGCACCTGTGCCGGTGGTGTTTGGCCTAGAGGCAAAGTTCCA
GAACATTGCTCCATGTATCATCGCTATCCAACTTCAACGGCGCACGTTAG
CTCGTTCCCTGACTATGCTGATGGACCCTTTGCCCCCTACGTATAAATAC
CTTCCGACGAATGCTCCATCCTTGACAGGAACGACAAGTGGGATCAAGTT
GTCGGCGCTTGCGGTGCTGGAGCATTCTTGAACAGAGCCAAGGGCCCAAG
CGGAATGGCGCAAGGGGCGGCAACCTACGGGCTCTTCTCGTTAATCTTTG
CAGTTCAGAGCAAGGAAGATGCATTGGACGTAGTCGATATCCCCGTGGAC
GCGCTTGCGAAGAAGAGGTAGTTCAACGATGTCTGCTGTACTCGTAAATG
CTCACAGTTGACTACCCTCGCACGGGCCTTCGCTATGTGCAGTGTCATCT
TGCATGGCGTACTCTCATAGCGCGACCCATTCCTGCAGCTCAAACTGTAA
ATGGTTGCAGGTTCGCTGGTACGCTTTCGGGCAGCAGCGGAAGGAAGACA
AGATGGTGCTTTTCGCATTTCGGTAATTTTGACGATTAATAACGATTTCA
CGCTGATGTTGTTGCCCTACGGTTGACATCGATATCGACTTTGAAATTGT
ATATGTTTGTGTCACACGTGCTTCTCTATCTCGTATGCTGGGTAATTCTA
ACGCCTGTTCGGGGGTTGTTGTGCAGTACAGTAGGCGCAGCCGTCACTTT
CTGCAACGTCCATGAATAGGTACGACATACCTAAGATCGTTGCCTGCATC
GCTGGAGAATACCCTGAAAACGTTCTTCGAGAGTTGCGGCGATTTGTTTA
AAATGTTGAGTAAGTTTTGCAATATCTGGTATACGATAGTCTACTGACTA
TAGCTTCGCGTACAACAGTAATGCAACAGCAGTGGAACAAGTAATGCAAC
AGTGGAACAAGTGCTGACGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9258:1175..4396+

>mRNA_M-pyrifera_M_contig9258.21414.1 ID=mRNA_M-pyrifera_M_contig9258.21414.1|Name=mRNA_M-pyrifera_M_contig9258.21414.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig9258:1175..4396+ (Macrocystis pyrifera P11B4 male)
ATGGGGGCAACCTTTGGCAAGGTGCCGGACGTTGGGTTGCTCAAGAGTGT
TCAAACGAAGGCAGTCCAGATGGGAGGAGACTGGGGCAAATTGACGGCTG
CCTTCTCAGGGTTCACGTCGGCGTCCACAGTTATTAGGGGCAGATGGGGG
CAACCTTTGGCAAGGTGCCGGACGTTGGGTTGCTCAAGAGTGTTCAAACG
AAGGCAGTCCAGATGGGAGGAGACTGGGGCAAATTGACGGCTGCCTTCTC
AGGGTTCACGTCGGCGTCCACAGTTATTAGGGGCAGGAACGACAAGTGGG
ATCAAGTTGTCGGCGCTTGCGGTGCTGGAGCATTCTTGAACAGAGCCAAG
GGCCCAAGCGGAATGGCGCAAGGGGCGGCAACCTACGGGCTCTTCTCGTT
AATCTTTGCAGTTCAGAGCAAGGAAGATGCATTGGACGTAGTCGATATCC
CCGTGGACGCGCTTGCGAAGAAGAGGTAGGAACGACAAGTGGGATCAAGT
TGTCGGCGCTTGCGGTGCTGGAGCATTCTTGAACAGAGCCAAGGGCCCAA
GCGGAATGGCGCAAGGGGCGGCAACCTACGGGCTCTTCTCGTTAATCTTT
GCAGTTCAGAGCAAGGAAGATGCATTGGACGTAGTCGATATCCCCGTGGA
CGCGCTTGCGAAGAAGAGGTAG
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