mRNA_M-pyrifera_M_contig92554.21408.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92554.21408.1
Unique NamemRNA_M-pyrifera_M_contig92554.21408.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Match: X0Z5Y7_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0Z5Y7_9ZZZZ)

HSP 1 Score: 72.4 bits (176), Expect = 5.120e-14
Identity = 45/123 (36.59%), Postives = 74/123 (60.16%), Query Frame = 1 
Query:    1 NKHITDDLDLIREDYKQQRDFFKMRSYEKAIANISRYTKAIENKKEAMRLPGVGKGIAEKIEEILEKGGSEHAEKMKA-----DPTLLAKEDL----ERILNVGPKKAQQLMDAGYRSLGDVR 342
            N+ + ++L ++++ YK+  D +++ +Y KAI  IS Y + I ++ +AM++ GVGKGIA+KI+E L+ G  E  E  K      D     KE +    ++I  VGP KA++L   G RS+ D+R
Sbjct:    2 NQELLNNLRILQDYYKKVGDNWRVLAYTKAITAISIYPEEITSRAQAMKIKGVGKGIADKIQEFLKFGKIEKVEDAKKEMGEIDKKRTTKEQIIDSFKKIWGVGPVKAEELFGKGMRSISDIR 124
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BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Match: UPI001ED89F66 (DNA polymerase beta-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED89F66)

HSP 1 Score: 75.1 bits (183), Expect = 1.240e-13
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:   55 RDFFKMRSYEKAIANISRYTKAIENKKEAMRLPGVGKGIAEKIEEILEKGGSEHAEKMKADPTLLAKEDLERILNVGPKKAQQLMDAGYRSLGDVR 342
            R+ +K  +Y KA ++++ Y K I++ +EA +LPGVG+ IA+KI+E L+ G  +  EK+ AD T        R+  +GP KA++L+DAG++ L D++
Sbjct:   33 RNIYKYNAYRKAASSLADYGKRIQSGEEARKLPGVGEKIAKKIDEFLQTGKLQKLEKIHADDTTTIINLFTRVSGIGPAKAKELLDAGFKKLEDLK 128
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BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Match: UPI001ED82F27 (DNA polymerase lambda n=1 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED82F27)

HSP 1 Score: 73.2 bits (178), Expect = 9.110e-13
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:    1 NKHITDDLDLIREDYKQQRDFFKMRSYEKAIANISRYTKAIENKKEAMRLPGVGKGIAEKIEEILEKGGSEHAEKM----KADPTLLAKEDLERILNVGPKKAQQLMDAGYRSLGDVR 342
            NKHITD L+++ + Y  Q D ++  SY KA+  +  Y K + + +EA ++PG+GK +A+KI+EI+E G   H  K+    +A P L   E    I   G K AQ     GYR+L D+R
Sbjct:  246 NKHITDKLEVLAKAYTHQGDKWRALSYSKAVNALKSYHKPVTSHQEACQIPGIGKRMADKIDEIMESG---HLRKLDHIGEAVPVL---ELFTNIWGAGTKTAQLWYQQGYRTLEDIR 357
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BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Match: UPI001FB5A4BF (DNA polymerase lambda n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB5A4BF)

HSP 1 Score: 73.2 bits (178), Expect = 9.110e-13
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:    1 NKHITDDLDLIREDYKQQRDFFKMRSYEKAIANISRYTKAIENKKEAMRLPGVGKGIAEKIEEILEKGGSEHAEKM----KADPTLLAKEDLERILNVGPKKAQQLMDAGYRSLGDVR 342
            NKHITD L+++ + Y  Q D ++   Y KA+  +  Y K + + +EA ++PG+GK +A+KI+EI+E G   H  K+    +A P L   E    I   G K AQQ    G+R+L D+R
Sbjct:  248 NKHITDKLEVLAKAYTHQGDKWRALGYSKAVNALKSYHKPVTSYQEACQIPGIGKSMADKIDEIMESG---HLRKLDHIGEAVPVL---ELFTNIWGAGAKTAQQWYQQGFRTLEDIR 359
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BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Match: A0A6P7M371_BETSP (DNA polymerase lambda n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7M371_BETSP)

HSP 1 Score: 72.8 bits (177), Expect = 1.240e-12
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 1 
Query:    1 NKHITDDLDLIREDYKQQRDFFKMRSYEKAIANISRYTKAIENKKEAMRLPGVGKGIAEKIEEILEKGGSEHAEKMKADPTLLAKEDLERILNVGPKKAQQLMDAGYRSLGDVR 342
            NKHITD L+++ + Y  Q D ++  SY KA+ ++  Y K I + +EA ++PG+GK +A+KI+EI+E G     + +  D  +L  E    I   G K AQ     G+R+L D+R
Sbjct:  240 NKHITDKLEVLAKAYTHQGDRWRALSYSKAVNSLKSYHKPITSYQEACQIPGIGKRMADKIDEIMESGHLRKLDHIGEDVPVL--ELFTNIWGAGFKTAQLWYQQGFRTLEDIR 351
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BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Match: A0A3Q1K9J5_ANATE (DNA polymerase lambda n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1K9J5_ANATE)

HSP 1 Score: 72.4 bits (176), Expect = 1.700e-12
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:    1 NKHITDDLDLIREDYKQQRDFFKMRSYEKAIANISRYTKAIENKKEAMRLPGVGKGIAEKIEEILEKGGSEHAEKMKADPTLLAKEDLERILNVGPKKAQQLMDAGYRSLGDVR 342
            NKHITD L+++ + Y  Q D ++  SY KA+  +  Y K I + +EA ++PG+GK +A+KI+EI+E G     + +  D  +L  E    I   G K AQ     G+R+L D+R
Sbjct:  246 NKHITDKLEVLAKAYTHQGDKWRALSYSKAVNALKSYHKPITSYQEACQIPGIGKRMADKIDEIMESGHLRKLDYIGEDVPVL--ELFTNIWGAGSKTAQLWYQQGFRTLEDIR 357
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BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Match: H3D3G8_TETNG (DNA polymerase lambda n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3D3G8_TETNG)

HSP 1 Score: 72.4 bits (176), Expect = 1.700e-12
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:    1 NKHITDDLDLIREDYKQQRDFFKMRSYEKAIANISRYTKAIENKKEAMRLPGVGKGIAEKIEEILEKGGSEHAEKM----KADPTLLAKEDLERILNVGPKKAQQLMDAGYRSLGDVR 342
            NKHITD L+++ + Y  Q D ++  SY KA+  +  Y K + + +EA ++PG+GK +A+KI+EI+E G   H  K+    +A P L   E    I   G K AQ     G+R+L D+R
Sbjct:  251 NKHITDKLEVLAKAYTHQGDKWRALSYSKAVNALKSYHKPVTSYQEACQIPGIGKSMADKIDEIMESG---HLRKLDHIGEAVPVL---ELFSNIWGAGAKTAQLWYQQGFRTLEDIR 362
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BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Match: I3KRF4_ORENI (DNA polymerase lambda n=12 Tax=Cichlidae TaxID=8113 RepID=I3KRF4_ORENI)

HSP 1 Score: 72.4 bits (176), Expect = 1.700e-12
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:    1 NKHITDDLDLIREDYKQQRDFFKMRSYEKAIANISRYTKAIENKKEAMRLPGVGKGIAEKIEEILEKGGSEHAEKM----KADPTLLAKEDLERILNVGPKKAQQLMDAGYRSLGDVR 342
            NKHITD L+L+ + Y  Q D ++   Y KA+  +  Y K I + +EA ++PG+GK +A+KIEEI+E G   H  K+    +A P L   E    I   G K AQ     G+R+L D+R
Sbjct:  264 NKHITDKLELLAKAYTHQGDKWRALGYSKAVNALKSYHKPITSYQEACQIPGIGKRMADKIEEIMESG---HLRKLDHIGEAVPVL---ELFVNIWGAGTKTAQLWYQQGFRTLDDIR 375
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BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Match: A0A667XLD1_9TELE (DNA polymerase lambda n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667XLD1_9TELE)

HSP 1 Score: 72.0 bits (175), Expect = 2.310e-12
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:    1 NKHITDDLDLIREDYKQQRDFFKMRSYEKAIANISRYTKAIENKKEAMRLPGVGKGIAEKIEEILEKGGSEHAEKM----KADPTLLAKEDLERILNVGPKKAQQLMDAGYRSLGDVR 342
            NKHITD L+++ + Y  Q D ++  SY KA+  +  Y K I + +EA ++PG+GK +A+KI+EI+E G   H  K+    +A P L   E    I   G K AQ     G+R+L D+R
Sbjct:  244 NKHITDKLEVLAKAYTHQGDKWRALSYSKAVNALKSYHKPITSYQEACQIPGIGKRMADKIDEIMESG---HLRKLDHIGEAVPVL---ELFNNIWGAGAKTAQLWYQQGFRTLEDIR 355
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BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Match: UPI001FACAEF2 (DNA polymerase lambda-like n=2 Tax=Girardinichthys multiradiatus TaxID=208333 RepID=UPI001FACAEF2)

HSP 1 Score: 72.0 bits (175), Expect = 2.320e-12
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:    1 NKHITDDLDLIREDYKQQRDFFKMRSYEKAIANISRYTKAIENKKEAMRLPGVGKGIAEKIEEILEKGGSEHAEKM----KADPTLLAKEDLERILNVGPKKAQQLMDAGYRSLGDVR 342
            NKHITD L+++ + Y  Q D ++   Y KA+  +  Y K +++ +EA ++PG+GK +A+KIEEI+E G   H  K+    +A P L   E    I   G K AQ     G+R+L D+R
Sbjct:  248 NKHITDKLEVLAKAYTHQGDKWRALGYSKAVNALKSYHKPVQSYQEACQIPGIGKRMADKIEEIMESG---HLRKLDHIGEAVPVL---ELFTNIWGAGAKTAQLWYQQGFRTLEDIR 359
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92554.21408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X0Z5Y7_9ZZZZ5.120e-1436.59Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
UPI001ED89F661.240e-1339.58DNA polymerase beta-like n=1 Tax=Ischnura elegans ... [more]
UPI001ED82F279.110e-1338.98DNA polymerase lambda n=1 Tax=Scatophagus argus Ta... [more]
UPI001FB5A4BF9.110e-1338.14DNA polymerase lambda n=1 Tax=Mugil cephalus TaxID... [more]
A0A6P7M371_BETSP1.240e-1237.72DNA polymerase lambda n=1 Tax=Betta splendens TaxI... [more]
A0A3Q1K9J5_ANATE1.700e-1237.72DNA polymerase lambda n=1 Tax=Anabas testudineus T... [more]
H3D3G8_TETNG1.700e-1238.14DNA polymerase lambda n=2 Tax=Tetraodon nigrovirid... [more]
I3KRF4_ORENI1.700e-1239.83DNA polymerase lambda n=12 Tax=Cichlidae TaxID=811... [more]
A0A667XLD1_9TELE2.310e-1238.98DNA polymerase lambda n=1 Tax=Myripristis murdjan ... [more]
UPI001FACAEF22.320e-1238.14DNA polymerase lambda-like n=2 Tax=Girardinichthys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92554contigM-pyrifera_M_contig92554:283..624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score77.0
Seed ortholog evalue6.2e-12
Seed eggNOG ortholog10224.XP_002734013.2
Preferred namePOLL
KEGG koko:K03512
KEGG Pathwayko03410,ko03450,map03410,map03450
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0000724,GO:0000725,GO:0000726,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006302,GO:0006303,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016445,GO:0016446,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048731,GO:0048856,GO:0050896,GO:0051575,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576
EggNOG free text desc.5'-deoxyribose-5-phosphate lyase activity
EggNOG OGs39ENV@33154,3BCKK@33208,3CWDE@33213,COG1796@1,KOG2534@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816838.4312446-CDS-M-pyrifera_M_contig92554:282..6241622816838.4312446-CDS-M-pyrifera_M_contig92554:282..624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92554 283..624 +
1692278208.352933-CDS-M-pyrifera_M_contig92554:282..6241692278208.352933-CDS-M-pyrifera_M_contig92554:282..624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92554 283..624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92554.21408.1prot_M-pyrifera_M_contig92554.21408.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92554 283..624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92554.21408.1

>prot_M-pyrifera_M_contig92554.21408.1 ID=prot_M-pyrifera_M_contig92554.21408.1|Name=mRNA_M-pyrifera_M_contig92554.21408.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
NKHITDDLDLIREDYKQQRDFFKMRSYEKAIANISRYTKAIENKKEAMRL
PGVGKGIAEKIEEILEKGGSEHAEKMKADPTLLAKEDLERILNVGPKKAQ
QLMDAGYRSLGDVR
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mRNA from alignment at M-pyrifera_M_contig92554:283..624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92554.21408.1 ID=mRNA_M-pyrifera_M_contig92554.21408.1|Name=mRNA_M-pyrifera_M_contig92554.21408.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig92554:283..624+ (Macrocystis pyrifera P11B4 male)
AACAAGCACATTACGGATGATTTGGACTTGATTCGGGAGGACTACAAGCA
GCAGCGCGATTTTTTTAAGATGAGGTCGTACGAAAAGGCGATTGCAAACA
TTTCTCGATACACCAAGGCAATCGAAAACAAGAAGGAAGCGATGCGTTTG
CCAGGGGTGGGGAAAGGAATTGCGGAAAAGATCGAGGAAATCCTGGAGAA
GGGTGGCAGTGAACATGCTGAAAAGATGAAGGCTGATCCTACGCTATTGG
CGAAGGAAGATTTAGAACGGATTCTGAATGTGGGCCCTAAGAAAGCTCAA
CAACTGATGGATGCAGGATATCGTAGTCTAGGAGACGTACGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92554:283..624+

>mRNA_M-pyrifera_M_contig92554.21408.1 ID=mRNA_M-pyrifera_M_contig92554.21408.1|Name=mRNA_M-pyrifera_M_contig92554.21408.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig92554:283..624+ (Macrocystis pyrifera P11B4 male)
AACAAGCACATTACGGATGATTTGGACTTGATTCGGGAGGACTACAAGCA
GCAGCGCGATTTTTTTAAGATGAGGTCGTACGAAAAGGCGATTGCAAACA
TTTCTCGATACACCAAGGCAATCGAAAACAAGAAGGAAGCGATGCGTTTG
CCAGGGGTGGGGAAAGGAATTGCGGAAAAGATCGAGGAAATCCTGGAGAA
GGGTGGCAGTGAACATGCTGAAAAGATGAAGGCTGATCCTACGCTATTGG
CGAAGGAAGATTTAGAACGGATTCTGAATGTGGGCCCTAAGAAAGCTCAA
CAACTGATGGATGCAGGATATCGTAGTCTAGGAGACGTACGTAACAAGCA
CATTACGGATGATTTGGACTTGATTCGGGAGGACTACAAGCAGCAGCGCG
ATTTTTTTAAGATGAGGTCGTACGAAAAGGCGATTGCAAACATTTCTCGA
TACACCAAGGCAATCGAAAACAAGAAGGAAGCGATGCGTTTGCCAGGGGT
GGGGAAAGGAATTGCGGAAAAGATCGAGGAAATCCTGGAGAAGGGTGGCA
GTGAACATGCTGAAAAGATGAAGGCTGATCCTACGCTATTGGCGAAGGAA
GATTTAGAACGGATTCTGAATGTGGGCCCTAAGAAAGCTCAACAACTGAT
GGATGCAGGATATCGTAGTCTAGGAGACGTACGT
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