mRNA_M-pyrifera_M_contig92341.21375.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92341.21375.1
Unique NamemRNA_M-pyrifera_M_contig92341.21375.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92341.21375.1 vs. uniprot
Match: A0A0L0D2J7_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D2J7_THETB)

HSP 1 Score: 59.7 bits (143), Expect = 1.400e-8
Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    1 ALQEMNATTAAVIRTVVPALPYELLAQNKGAMDNDNGIFYILGYNQSMT-VPNLVGVDVSSGDIVCDATLPFAESGFIGVGQ 243
            AL+ ++ TT   +  V  +LPYE   Q    +D + GI+YI+G N S +    LVGV V++G++V +  LPF  S  IGVGQ
Sbjct:   32 ALEAISTTTGQPVE-VSSSLPYEAQGQGLATLDEELGIYYIIGTNVSASNAVKLVGVSVATGNVVAETPLPFQSSELIGVGQ 112
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92341.21375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0L0D2J7_THETB1.400e-841.46Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92341contigM-pyrifera_M_contig92341:2..244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.685216-CDS-M-pyrifera_M_contig92341:1..2321622816836.685216-CDS-M-pyrifera_M_contig92341:1..232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92341 2..232 -
1692278207.2980788-CDS-M-pyrifera_M_contig92341:1..2321692278207.2980788-CDS-M-pyrifera_M_contig92341:1..232Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92341 2..232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.6973627-UTR-M-pyrifera_M_contig92341:232..2441622816836.6973627-UTR-M-pyrifera_M_contig92341:232..244Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92341 233..244 -
1692278207.3087626-UTR-M-pyrifera_M_contig92341:232..2441692278207.3087626-UTR-M-pyrifera_M_contig92341:232..244Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig92341 233..244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92341.21375.1prot_M-pyrifera_M_contig92341.21375.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92341 2..232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92341.21375.1

>prot_M-pyrifera_M_contig92341.21375.1 ID=prot_M-pyrifera_M_contig92341.21375.1|Name=mRNA_M-pyrifera_M_contig92341.21375.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MNATTAAVIRTVVPALPYELLAQNKGAMDNDNGIFYILGYNQSMTVPNLV
GVDVSSGDIVCDATLPFAESGFIGVGQ
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mRNA from alignment at M-pyrifera_M_contig92341:2..244-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92341.21375.1 ID=mRNA_M-pyrifera_M_contig92341.21375.1|Name=mRNA_M-pyrifera_M_contig92341.21375.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig92341:2..244- (Macrocystis pyrifera P11B4 male)
GCATTGCAAGAGATGAATGCAACAACTGCAGCAGTGATTCGAACTGTGGT
TCCTGCGTTGCCGTACGAACTCCTGGCGCAGAACAAAGGCGCCATGGACA
ATGACAATGGTATTTTCTACATCTTGGGGTACAATCAAAGCATGACAGTC
CCAAATCTGGTGGGAGTGGATGTGTCAAGTGGCGACATCGTGTGTGACGC
GACTTTGCCATTTGCAGAGTCTGGATTCATTGGTGTTGGGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92341:2..244-

>mRNA_M-pyrifera_M_contig92341.21375.1 ID=mRNA_M-pyrifera_M_contig92341.21375.1|Name=mRNA_M-pyrifera_M_contig92341.21375.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig92341:2..244- (Macrocystis pyrifera P11B4 male)
ATGAATGCAACAACTGCAGCAGTGATTCGAACTGTGGTTCCTGCGTTGCC
GTACGAACTCCTGGCGCAGAACAAAGGCGCCATGGACAATGACAATGGTA
TTTTCTACATCTTGGGGTACAATCAAAGCATGACAGTCCCAAATCTGGTG
GGAGTGGATGTGTCAAGTGGCGACATCGTGTGTGACGCGACTTTGCCATT
TGCAGAGTCTGGATTCATTGGTGTTGGGCAAATGAATGCAACAACTGCAG
CAGTGATTCGAACTGTGGTTCCTGCGTTGCCGTACGAACTCCTGGCGCAG
AACAAAGGCGCCATGGACAATGACAATGGTATTTTCTACATCTTGGGGTA
CAATCAAAGCATGACAGTCCCAAATCTGGTGGGAGTGGATGTGTCAAGTG
GCGACATCGTGTGTGACGCGACTTTGCCATTTGCAGAGTCTGGATTCATT
GGTGTTGGGCAA
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