mRNA_M-pyrifera_M_contig92333.21371.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92333.21371.1
Unique NamemRNA_M-pyrifera_M_contig92333.21371.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Match: A0A2E3GR66_9PLAN (Integrase n=1 Tax=Planctomyces sp. TaxID=37635 RepID=A0A2E3GR66_9PLAN)

HSP 1 Score: 161 bits (408), Expect = 1.560e-47
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1 
Query:    1 LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYLPF 228
            LDESAVWRIV+KASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYLPF
Sbjct:  235 LDESAVWRIVRKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYLPF 310
[Close]
BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Match: A0A518DWL2_9BACT (Tyrosine recombinase XerD n=2 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518DWL2_9BACT)

HSP 1 Score: 159 bits (402), Expect = 1.240e-46
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYLPF 228
            LDESAVWRIVKKASERAGIDK VSCHWFRHAHASHALDRGCPIHLVQATLGH+SISTTGRYLHARPTDSSGNYLPF
Sbjct:  235 LDESAVWRIVKKASERAGIDKEVSCHWFRHAHASHALDRGCPIHLVQATLGHSSISTTGRYLHARPTDSSGNYLPF 310
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BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Match: A0A356A7I1_9PLAN (Integrase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356A7I1_9PLAN)

HSP 1 Score: 157 bits (398), Expect = 4.960e-46
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYLPF 228
            LDESAVWRIV KASERAG++KNVSCHWFRHAHASHALDRGCPIHLVQATLGH+SISTTGRYLHARPTDSSGNYLPF
Sbjct:  235 LDESAVWRIVSKASERAGVEKNVSCHWFRHAHASHALDRGCPIHLVQATLGHSSISTTGRYLHARPTDSSGNYLPF 310
[Close]
BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Match: A0A2E2C2C9_9PLAN (Integrase n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E2C2C9_9PLAN)

HSP 1 Score: 157 bits (397), Expect = 7.010e-46
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYLP 225
            LDESAVWRIVKKASERAGIDK+VSCHWFRHAHASHALDRGCPIHLVQATLGH+SISTTGRYLHARPTDSSGNYLP
Sbjct:  235 LDESAVWRIVKKASERAGIDKDVSCHWFRHAHASHALDRGCPIHLVQATLGHSSISTTGRYLHARPTDSSGNYLP 309
[Close]
BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Match: A0A257WNT6_9BACT (Integrase n=2 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257WNT6_9BACT)

HSP 1 Score: 157 bits (397), Expect = 7.010e-46
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:    1 LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYLPF 228
            LDESAVWRIV KAS RAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGH+SISTTGRYLHARPTDSSGNYLPF
Sbjct:  235 LDESAVWRIVSKASARAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHSSISTTGRYLHARPTDSSGNYLPF 310
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BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Match: F0SJ33_RUBBR (Integrase family protein n=1 Tax=Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / IAM 15109 / NBRC 103401 / IFAM 1448) TaxID=756272 RepID=F0SJ33_RUBBR)

HSP 1 Score: 154 bits (389), Expect = 1.110e-44
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYL 222
            LDESAVWRIVKKA+ERAGIDKNVSCHWFRHAHASHALDR CPIHLVQATLGHASISTTGRYLHARPTDSSGNYL
Sbjct:  235 LDESAVWRIVKKAAERAGIDKNVSCHWFRHAHASHALDRNCPIHLVQATLGHASISTTGRYLHARPTDSSGNYL 308
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BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Match: UPI001CC970D7 (tyrosine-type recombinase/integrase n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CC970D7)

HSP 1 Score: 148 bits (373), Expect = 1.500e-44
Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYL 222
            LDESAVWRIVKKAS+RAGIDK+VSCHWFRHAHASHALDRGCPIHLVQATLGH+SISTTGRYLHARP++SSG YL
Sbjct:   45 LDESAVWRIVKKASQRAGIDKDVSCHWFRHAHASHALDRGCPIHLVQATLGHSSISTTGRYLHARPSESSGEYL 118
[Close]
BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Match: M5TY82_9BACT (Integrase family protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5TY82_9BACT)

HSP 1 Score: 148 bits (373), Expect = 3.900e-42
Identity = 68/76 (89.47%), Postives = 73/76 (96.05%), Query Frame = 1 
Query:    1 LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYLPF 228
            LDESAVWRIV KASERAGI+K+VSCHW RHAHASHALDRGCPIHLVQATLGH+SISTTGRYLHA+P+DSSGNYL F
Sbjct:  249 LDESAVWRIVNKASERAGIEKDVSCHWLRHAHASHALDRGCPIHLVQATLGHSSISTTGRYLHAKPSDSSGNYLAF 324
[Close]
BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Match: UPI001F00BB7F (tyrosine-type recombinase/integrase n=1 Tax=Rubinisphaera sp. JC750 TaxID=2898658 RepID=UPI001F00BB7F)

HSP 1 Score: 142 bits (359), Expect = 2.120e-40
Identity = 64/74 (86.49%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:    1 LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYL 222
            L+ESAVWRIV+KASERAGIDK+VSCHWFRHAHASHALDRGCPIHLVQATLGH+SI+TTG+YLHA+P++SSG YL
Sbjct:  213 LNESAVWRIVRKASERAGIDKDVSCHWFRHAHASHALDRGCPIHLVQATLGHSSIATTGKYLHAKPSESSGGYL 286
[Close]
BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Match: UPI001E61AE88 (tyrosine-type recombinase/integrase n=1 Tax=Roseiconus lacunae TaxID=2605694 RepID=UPI001E61AE88)

HSP 1 Score: 138 bits (348), Expect = 1.440e-38
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATLGHASISTTGRYLHARPTDSSGNYLP 225
            L ESAVWR+VKKA++RAGI K+VSCHWFRH H SHALDRG PIHLVQATLGH+S++TTGRYLHARP+DSSGNYLP
Sbjct:  231 LCESAVWRVVKKATKRAGIPKDVSCHWFRHCHGSHALDRGAPIHLVQATLGHSSVATTGRYLHARPSDSSGNYLP 305
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92333.21371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3GR66_9PLAN1.560e-4798.68Integrase n=1 Tax=Planctomyces sp. TaxID=37635 Rep... [more]
A0A518DWL2_9BACT1.240e-4697.37Tyrosine recombinase XerD n=2 Tax=Lignipirellula c... [more]
A0A356A7I1_9PLAN4.960e-4694.74Integrase n=1 Tax=Planctomycetaceae bacterium TaxI... [more]
A0A2E2C2C9_9PLAN7.010e-4697.33Integrase n=1 Tax=Gimesia sp. TaxID=2024833 RepID=... [more]
A0A257WNT6_9BACT7.010e-4696.05Integrase n=2 Tax=Planctomycetales bacterium 12-60... [more]
F0SJ33_RUBBR1.110e-4497.30Integrase family protein n=1 Tax=Rubinisphaera bra... [more]
UPI001CC970D71.500e-4491.89tyrosine-type recombinase/integrase n=1 Tax=Bremer... [more]
M5TY82_9BACT3.900e-4289.47Integrase family protein n=2 Tax=Rhodopirellula Ta... [more]
UPI001F00BB7F2.120e-4086.49tyrosine-type recombinase/integrase n=1 Tax=Rubini... [more]
UPI001E61AE881.440e-3882.67tyrosine-type recombinase/integrase n=1 Tax=Roseic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92333contigM-pyrifera_M_contig92333:3..233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score154.5
Seed ortholog evalue2.1e-35
Seed eggNOG ortholog756272.Plabr_0954
KEGG koko:K04763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the 'phage' integrase family
EggNOG OGsCOG4974@1,COG4974@2
COG Functional cat.L
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816836.530591-CDS-M-pyrifera_M_contig92333:2..2331622816836.530591-CDS-M-pyrifera_M_contig92333:2..233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92333 3..233 +
1692278207.226758-CDS-M-pyrifera_M_contig92333:2..2331692278207.226758-CDS-M-pyrifera_M_contig92333:2..233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92333 3..233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92333.21371.1prot_M-pyrifera_M_contig92333.21371.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92333 3..233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92333.21371.1

>prot_M-pyrifera_M_contig92333.21371.1 ID=prot_M-pyrifera_M_contig92333.21371.1|Name=mRNA_M-pyrifera_M_contig92333.21371.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
LDESAVWRIVKKASERAGIDKNVSCHWFRHAHASHALDRGCPIHLVQATL
GHASISTTGRYLHARPTDSSGNYLPF*
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mRNA from alignment at M-pyrifera_M_contig92333:3..233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92333.21371.1 ID=mRNA_M-pyrifera_M_contig92333.21371.1|Name=mRNA_M-pyrifera_M_contig92333.21371.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig92333:3..233+ (Macrocystis pyrifera P11B4 male)
TTGGACGAGTCGGCGGTTTGGCGAATCGTCAAGAAGGCATCGGAGCGGGC
CGGTATCGACAAGAATGTGTCCTGCCATTGGTTCCGCCATGCCCATGCGT
CACACGCTCTGGACCGGGGCTGTCCTATTCACTTGGTTCAAGCGACCCTC
GGCCATGCTTCGATCTCGACGACAGGACGATACCTGCACGCACGTCCCAC
CGATTCGAGTGGCAACTACTTACCTTTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92333:3..233+

>mRNA_M-pyrifera_M_contig92333.21371.1 ID=mRNA_M-pyrifera_M_contig92333.21371.1|Name=mRNA_M-pyrifera_M_contig92333.21371.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig92333:3..233+ (Macrocystis pyrifera P11B4 male)
TTGGACGAGTCGGCGGTTTGGCGAATCGTCAAGAAGGCATCGGAGCGGGC
CGGTATCGACAAGAATGTGTCCTGCCATTGGTTCCGCCATGCCCATGCGT
CACACGCTCTGGACCGGGGCTGTCCTATTCACTTGGTTCAAGCGACCCTC
GGCCATGCTTCGATCTCGACGACAGGACGATACCTGCACGCACGTCCCAC
CGATTCGAGTGGCAACTACTTACCTTTCTGATTGGACGAGTCGGCGGTTT
GGCGAATCGTCAAGAAGGCATCGGAGCGGGCCGGTATCGACAAGAATGTG
TCCTGCCATTGGTTCCGCCATGCCCATGCGTCACACGCTCTGGACCGGGG
CTGTCCTATTCACTTGGTTCAAGCGACCCTCGGCCATGCTTCGATCTCGA
CGACAGGACGATACCTGCACGCACGTCCCACCGATTCGAGTGGCAACTAC
TTACCTTTCTGA
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