mRNA_M-pyrifera_M_contig92262.21359.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig92262.21359.1
Unique NamemRNA_M-pyrifera_M_contig92262.21359.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig92262.21359.1 vs. uniprot
Match: A0A832MDZ4_9BACT (PDZ domain-containing protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A832MDZ4_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 3.520e-6
Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:   13 SPWYSGNHAVAQQAAEGEPGYLGIIADDQRTNGTGVRLLKVLPEGPAEKGGLEVADLITAINEKQVRNMQDMAEAIMGSQAGD 261
            +P   G  +V ++   G  G+LG+   D      G ++L+V+PE  AEK G+EV D+ITA+N K  ++  ++   I G   GD
Sbjct:  145 TPLAVGVVSVNRRKIPGRSGFLGVSLGDGEN---GAKVLQVVPESAAEKAGVEVDDVITAVNGKATKSRDELINTIRGQAPGD 224
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BLAST of mRNA_M-pyrifera_M_contig92262.21359.1 vs. uniprot
Match: UPI00198A97B3 (PDZ domain-containing protein n=1 Tax=Fimbriimonadaceae bacterium TaxID=2682144 RepID=UPI00198A97B3)

HSP 1 Score: 52.8 bits (125), Expect = 5.060e-6
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:   64 EPGYLGIIADDQRTNGTGVRLLKVLPEGPAEKGGLEVADLITAINEKQVRNMQDMAEAIMGSQAGD 261
            E G+LG+I DD   N  GV++  ++ E  AE+ GL+  D+I +I+ K+++N  D+ EAI   + GD
Sbjct:  262 ERGFLGVIIDDM-DNDAGVKISDIVEESAAEEIGLKAGDIINSIDGKEMKNYDDVLEAIQNKKPGD 326
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BLAST of mRNA_M-pyrifera_M_contig92262.21359.1 vs. uniprot
Match: Q7VEA7_PROMA (Periplasmic trypsin-like serine protease n=1 Tax=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) TaxID=167539 RepID=Q7VEA7_PROMA)

HSP 1 Score: 51.6 bits (122), Expect = 1.260e-5
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:  103 TNGTGVRLLKVLPEGPAEKGGLEVADLITAINEKQVRNMQDMAEAI 240
            TNG G  ++ VLP GPAEK GL+V D+I +IN K V+N QD+   I
Sbjct:  311 TNGKGALIIYVLPGGPAEKRGLKVNDVIISINNKDVKNPQDVVNTI 356
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BLAST of mRNA_M-pyrifera_M_contig92262.21359.1 vs. uniprot
Match: A0A2E3MNZ8_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E3MNZ8_9PLAN)

HSP 1 Score: 51.2 bits (121), Expect = 1.700e-5
Identity = 24/64 (37.50%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:   70 GYLGIIADDQRTNGTGVRLLKVLPEGPAEKGGLEVADLITAINEKQVRNMQDMAEAIMGSQAGD 261
            G+LG+ ADD    G GVR+  V P G A++ G+EVADL+ A+ ++ V ++  ++  +    +GD
Sbjct:   51 GFLGLRADDFGQQGRGVRVTLVHPGGAADRAGVEVADLVLAVGQRAVVDLDSLSSLLESKTSGD 114
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BLAST of mRNA_M-pyrifera_M_contig92262.21359.1 vs. uniprot
Match: A0A2G2KLC0_9BACT (PDZ domain-containing protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2KLC0_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 3.170e-5
Identity = 22/64 (34.38%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   70 GYLGIIADDQRTNGTGVRLLKVLPEGPAEKGGLEVADLITAINEKQVRNMQDMAEAIMGSQAGD 261
            GYLG + DD +   +GV ++KV P+GPAE+ GL   D +  ++   ++N++ +A  +   + GD
Sbjct:   54 GYLGAVIDDIKDAESGVTVIKVNPDGPAEQAGLRAGDTLQRVDGVVIKNLEHLATVMSKKKPGD 117
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BLAST of mRNA_M-pyrifera_M_contig92262.21359.1 vs. uniprot
Match: A0A5R8Y0V1_9PROT (Periplasmic serine endoprotease DegP-like n=1 Tax=[Halarcobacter] arenosus TaxID=2576037 RepID=A0A5R8Y0V1_9PROT)

HSP 1 Score: 50.1 bits (118), Expect = 4.480e-5
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:   70 GYLGIIADDQRTN-------GTGVRLLKVLPEGPAEKGGLEVADLITAINEKQVRNMQDMAEAI 240
            GYLG++ DD + N        +G  +L V  + PA K GL+  DLIT+IN +++RN +D+   I
Sbjct:  277 GYLGVVIDDLKPNLMKLYKSNSGALVLDVASDTPAAKAGLKRGDLITSINNREIRNRKDLQNVI 340
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BLAST of mRNA_M-pyrifera_M_contig92262.21359.1 vs. uniprot
Match: A0A7C4P106_9BACT (M20/M25/M40 family metallo-hydrolase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7C4P106_9BACT)

HSP 1 Score: 49.7 bits (117), Expect = 6.210e-5
Identity = 24/61 (39.34%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   76 LGIIADDQRTNGTGVRLLKVLPEGPAEKGGLEVADLITAINEKQVRNMQDMAEAIMGSQAG 258
            LGI+ D   T+  G++++ V    PAE  G++V DLI AIN+K ++N+ D  EA+   + G
Sbjct:  488 LGIMPDVSGTSDEGLKVIGVTEGKPAEIAGIQVGDLIIAINQKSIKNIYDYTEALSALEPG 548
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig92262.21359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A832MDZ4_9BACT3.520e-634.94PDZ domain-containing protein n=1 Tax=Phycisphaera... [more]
UPI00198A97B35.060e-639.39PDZ domain-containing protein n=1 Tax=Fimbriimonad... [more]
Q7VEA7_PROMA1.260e-554.35Periplasmic trypsin-like serine protease n=1 Tax=P... [more]
A0A2E3MNZ8_9PLAN1.700e-537.50Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2G2KLC0_9BACT3.170e-534.38PDZ domain-containing protein n=1 Tax=Blastopirell... [more]
A0A5R8Y0V1_9PROT4.480e-539.06Periplasmic serine endoprotease DegP-like n=1 Tax=... [more]
A0A7C4P106_9BACT6.210e-539.34M20/M25/M40 family metallo-hydrolase n=1 Tax=Bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig92262contigM-pyrifera_M_contig92262:507..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816835.673639-CDS-M-pyrifera_M_contig92262:506..7671622816835.673639-CDS-M-pyrifera_M_contig92262:506..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92262 507..767 +
1692278206.7192187-CDS-M-pyrifera_M_contig92262:506..7671692278206.7192187-CDS-M-pyrifera_M_contig92262:506..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig92262 507..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig92262.21359.1prot_M-pyrifera_M_contig92262.21359.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig92262 507..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig92262.21359.1

>prot_M-pyrifera_M_contig92262.21359.1 ID=prot_M-pyrifera_M_contig92262.21359.1|Name=mRNA_M-pyrifera_M_contig92262.21359.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MLLVSPWYSGNHAVAQQAAEGEPGYLGIIADDQRTNGTGVRLLKVLPEGP
AEKGGLEVADLITAINEKQVRNMQDMAEAIMGSQAGD
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mRNA from alignment at M-pyrifera_M_contig92262:507..767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig92262.21359.1 ID=mRNA_M-pyrifera_M_contig92262.21359.1|Name=mRNA_M-pyrifera_M_contig92262.21359.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig92262:507..767+ (Macrocystis pyrifera P11B4 male)
ATGCTGCTGGTGTCGCCCTGGTATTCGGGAAACCATGCCGTTGCTCAGCA
GGCAGCAGAGGGAGAACCAGGATATTTGGGGATCATTGCCGACGATCAGC
GTACCAACGGAACCGGGGTGCGTTTGCTGAAAGTGTTGCCTGAAGGTCCC
GCGGAGAAGGGCGGTCTGGAAGTGGCCGATCTCATTACGGCCATCAACGA
GAAGCAAGTTCGCAATATGCAGGACATGGCCGAGGCGATCATGGGCTCGC
AAGCCGGCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig92262:507..767+

>mRNA_M-pyrifera_M_contig92262.21359.1 ID=mRNA_M-pyrifera_M_contig92262.21359.1|Name=mRNA_M-pyrifera_M_contig92262.21359.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig92262:507..767+ (Macrocystis pyrifera P11B4 male)
ATGCTGCTGGTGTCGCCCTGGTATTCGGGAAACCATGCCGTTGCTCAGCA
GGCAGCAGAGGGAGAACCAGGATATTTGGGGATCATTGCCGACGATCAGC
GTACCAACGGAACCGGGGTGCGTTTGCTGAAAGTGTTGCCTGAAGGTCCC
GCGGAGAAGGGCGGTCTGGAAGTGGCCGATCTCATTACGGCCATCAACGA
GAAGCAAGTTCGCAATATGCAGGACATGGCCGAGGCGATCATGGGCTCGC
AAGCCGGCGACATGCTGCTGGTGTCGCCCTGGTATTCGGGAAACCATGCC
GTTGCTCAGCAGGCAGCAGAGGGAGAACCAGGATATTTGGGGATCATTGC
CGACGATCAGCGTACCAACGGAACCGGGGTGCGTTTGCTGAAAGTGTTGC
CTGAAGGTCCCGCGGAGAAGGGCGGTCTGGAAGTGGCCGATCTCATTACG
GCCATCAACGAGAAGCAAGTTCGCAATATGCAGGACATGGCCGAGGCGAT
CATGGGCTCGCAAGCCGGCGAC
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